Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG5G4290 Aethionema arabicum HOM05D003806 ORTHO05D004346 1.3e-276 957.2 1296 100.0
Sp4g14610 Schrenkiella parvula HOM05D003806 ORTHO05D004346 2.8e-106 391.3 1339 63.2
CARHR126030 Cardamine hirsuta HOM05D003806 ORTHO05D004346 1.2e-101 375.9 1355 60.7
THA.LOC104800972 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 2.4e-97 361.7 1353 54.8
C04p17390 Brassica napus HOM05D003806 ORTHO05D004346 1.6e-90 339.0 568 47.0
BcaC02g11341 Brassica carinata HOM05D003806 ORTHO05D001704 4.8e-90 337.4 567 46.7
AT1G05320 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 8.5e-87 326.6 555 46.1
BolC4t23290H Brassica oleracea HOM05D008171 ORTHO05D006541 9.3e-86 323.2 559 46.3
AL4G27610 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 5.0e-79 300.8 1336 61.5
Haze_13639 Corylus avellana HOM05D003806 ORTHO05D004346 1.8e-73 282.3 621 44.1
Thhalv10016148m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 9.4e-70 270.0 444 52.0
Carub.0001s0463 Capsella rubella HOM05D003806 ORTHO05D004346 2.3e-68 265.4 575 42.8
COL.COLO4_33757 Corchorus olitorius HOM05D003806 ORTHO05D004346 5.2e-68 264.2 996 50.4
Manes.09G072900 Manihot esculenta HOM05D003806 ORTHO05D004346 7.4e-67 260.4 990 48.8
Dinv09877 Davidia involucrata HOM05D003806 ORTHO05D004346 6.3e-66 257.3 621 37.0
AL1G15120 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 8.2e-66 256.9 560 48.8
THA.LOC104816049 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 4.1e-65 254.6 1356 37.2
MD09G1138500 Malus domestica HOM05D003806 ORTHO05D004346 9.1e-65 253.4 998 45.6
Thecc.01G172500 Theobroma cacao HOM05D003806 ORTHO05D004346 2.6e-64 251.9 1382 42.8
Dinv08951 Davidia involucrata HOM05D003806 ORTHO05D004346 1.3e-63 249.6 533 38.1
BolC5t29142H Brassica oleracea HOM05D003806 ORTHO05D004346 1.1e-62 246.5 554 36.8
Prupe.3G186800 Prunus persica HOM05D003806 ORTHO05D004346 1.5e-62 246.1 616 37.2
GSVIVG01015817001 Vitis vinifera HOM05D003806 ORTHO05D004346 2.5e-62 245.4 650 33.8
MD17G1128600 Malus domestica HOM05D003806 ORTHO05D004346 5.5e-62 244.2 618 34.1
Gohir.D07G087100 Gossypium hirsutum HOM05D003806 ORTHO05D004346 6.1e-61 240.7 618 36.6
Atru.chr8.989 Acer truncatum HOM05D003806 ORTHO05D004346 5.2e-60 237.7 593 43.2
Cfa023525 Carpinus fangiana HOM05D003806 ORTHO05D004346 5.2e-60 237.7 621 38.5
Lj1A1039T31 Lonicera japonica HOM05D003806 ORTHO05D004346 7.5e-59 233.8 1374 44.8
Gohir.A07G081500 Gossypium hirsutum HOM05D003806 ORTHO05D004346 2.2e-58 232.3 619 35.4
Gorai.001G093100 Gossypium raimondii HOM05D003806 ORTHO05D004346 2.2e-58 232.3 618 36.2
QL04p061548 Quercus lobata HOM05D003806 ORTHO05D004346 3.7e-58 231.5 623 38.7
AT2G32240 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 1.8e-57 229.2 1356 60.8
BcaC01g05916 Brassica carinata HOM05D003806 ORTHO05D004346 2.4e-57 228.8 348 52.0
Cpa.g.sc8.294 Carica papaya HOM05D003806 ORTHO05D004346 4.1e-57 228.0 1532 31.4
Duzib133G0409 Durio zibethinus HOM05D003806 ORTHO05D004346 5.3e-57 227.6 614 34.5
TWI34G1284 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 2.0e-56 225.7 618 33.0
Duzib138G1777 Durio zibethinus HOM05D003806 ORTHO05D004346 2.7e-56 225.3 618 34.1
TAR626G1670 Trochodendron aralioides HOM05D003806 ORTHO05D004346 4.5e-56 224.6 1044 47.7
TWI60G0662 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 2.2e-55 222.2 408 39.2
Ciclev10010914m.g Citrus clementina HOM05D003806 ORTHO05D004346 2.9e-55 221.9 1379 48.9
CiPaw.03G113300 Carya illinoinensis HOM05D003806 ORTHO05D004346 3.8e-55 221.5 1389 46.1
RcHm_v2.0_Chr2g0153621 Rosa chinensis HOM05D003806 ORTHO05D004346 1.1e-54 219.9 615 34.0
C03p21110 Brassica napus HOM05D003806 ORTHO05D004346 4.2e-54 218.0 343 54.8
C05p03650 Brassica napus HOM05D003806 ORTHO05D004346 4.2e-54 218.0 554 37.5
BolC3t14493H Brassica oleracea HOM05D003806 ORTHO05D004346 4.2e-54 218.0 343 54.8
MBI02_g35832_MAGBIO Magnolia biondii HOM05D003806 ORTHO05D004346 6.1e-53 214.2 537 40.8
Cc05_g00050 Coffea canephora HOM05D003806 ORTHO05D004346 1.0e-52 213.4 612 35.8
Hma1.2p1_0401F.1_g144710 Hydrangea macrophylla HOM05D003806 ORTHO05D004346 2.2e-50 205.7 620 35.6
A03p18080 Brassica napus HOM05D003806 ORTHO05D004346 1.8e-49 202.6 352 48.6
Gohir.A11G156200 Gossypium hirsutum HOM05D003806 ORTHO05D004346 1.7e-47 196.1 615 34.1
Gohir.D11G163300 Gossypium hirsutum HOM05D003806 ORTHO05D004346 2.9e-47 195.3 613 32.3
Gorai.007G174000 Gossypium raimondii HOM05D003806 ORTHO05D004346 2.9e-47 195.3 613 32.5
FvH4_6g39571 Fragaria vesca HOM05D003806 ORTHO05D004346 3.8e-47 194.9 615 36.9
FAN05G0560 Fragaria x ananassa HOM05D003806 ORTHO05D004346 8.6e-47 193.7 615 35.9
PGSC0003DMG400011753 Solanum tuberosum HOM05D003806 ORTHO05D004346 1.2e-45 189.9 610 29.0
Sabra16G0025500 Salix brachista HOM05D003806 ORTHO05D004346 3.6e-45 188.3 1392 37.4
CiPaw.04G076200 Carya illinoinensis HOM05D003806 ORTHO05D004346 1.8e-44 186.0 341 41.3
Sabra16G0020700 Salix brachista HOM05D003806 ORTHO05D004346 3.0e-44 185.3 1392 37.3
Psat7g179080 Pisum sativum HOM05D003806 ORTHO05D004346 5.2e-44 184.5 607 38.9
Potri.016G018700 Populus trichocarpa HOM05D003806 ORTHO05D004346 5.2e-44 184.5 400 36.5
arahy.Tifrunner.gnm1.ann1.LI5V6E Arachis hypogaea HOM05D003806 ORTHO05D004346 8.8e-44 183.7 991 47.5
Potri.006G021200 Populus trichocarpa HOM05D003806 ORTHO05D004346 1.2e-43 183.3 401 36.9
A05p13020 Brassica napus HOM05D003806 ORTHO05D004346 3.4e-43 181.8 1461 51.5
Carub.0004s1356 Capsella rubella HOM05D003806 ORTHO05D004346 1.7e-42 179.5 1335 59.0
Ca_11242_v3 Cicer arietinum L. HOM05D003806 ORTHO05D004346 2.7e-40 172.2 611 36.7
HPP92_009459 Vanilla planifolia HOM05D003806 ORTHO05D004346 3.5e-40 171.8 619 27.1
arahy.Tifrunner.gnm1.ann1.TP1CMR Arachis hypogaea HOM05D003806 ORTHO05D004346 2.3e-39 169.1 991 50.1
A10p04030 Brassica napus HOM05D003806 ORTHO05D004346 2.3e-39 169.1 554 31.6
FAN09G2907 Fragaria x ananassa HOM05D003806 ORTHO05D004346 2.3e-39 169.1 615 32.0
Rhsim12G0014400 Rhododendron simsii HOM05D003806 ORTHO05D004346 2.3e-39 169.1 327 46.8
Glyma.12G022500 Glycine max HOM05D003806 ORTHO05D004346 8.6e-39 167.2 615 33.7
Sp1g04190 Schrenkiella parvula HOM05D003806 ORTHO05D004346 8.6e-39 167.2 1315 39.5
Solyc07g043320.3 Solanum lycopersicum HOM05D003806 ORTHO05D004346 1.1e-38 166.8 610 27.7
Nn7g38253 Nelumbo nucifera HOM05D003806 ORTHO05D004346 1.5e-38 166.4 629 28.9
CSS0010582 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 1.9e-38 166.0 1100 46.9
VMungo1127G1373 Vigna mungo HOM05D003806 ORTHO05D004346 1.9e-38 166.0 988 43.9
BraA03t11067Z Brassica rapa HOM05D003806 ORTHO05D004346 3.3e-38 165.2 352 46.3
Sed0016792 Sechium edule HOM05D003806 ORTHO05D004346 9.5e-38 163.7 814 28.6
Actinidia28585 Actinidia chinensis HOM05D003806 ORTHO05D004346 1.2e-37 163.3 1105 41.0
Eucgr.A00904 Eucalyptus grandis HOM05D003806 ORTHO05D004346 3.6e-37 161.8 1416 43.9
FAN02G2860 Fragaria x ananassa HOM05D003806 ORTHO05D004346 8.0e-37 160.6 630 33.5
Lalb_Chr01g0001171 Lupinus albus HOM05D003806 ORTHO05D004346 8.0e-37 160.6 611 35.0
PSO675G3405 Papaver somniferum HOM05D003806 ORTHO05D004346 6.8e-36 157.5 492 35.2
BraA10t42674Z Brassica rapa HOM05D003806 ORTHO05D004346 1.2e-35 156.8 554 33.4
Sabra06G0014700 Salix brachista HOM05D003806 ORTHO05D004346 2.6e-35 155.6 366 35.5
DCAR_009841 Daucus carota HOM05D003806 ORTHO05D004346 4.4e-35 154.8 310 43.9
Nitab4.5_0000170g0440 Nicotiana tabacum HOM05D003806 ORTHO05D004346 4.4e-35 154.8 990 38.5
PSO541G2929 Papaver somniferum HOM05D003806 ORTHO05D004346 3.7e-34 151.8 573 28.3
Glyma.11G096400 Glycine max HOM05D003806 ORTHO05D004346 6.4e-34 151.0 991 42.5
Sabra06G0014600 Salix brachista HOM05D003806 ORTHO05D004346 6.4e-34 151.0 585 32.1
Peaxi162Scf00393g00413 Petunia axillaris HOM05D003806 ORTHO05D004346 1.1e-33 150.2 613 33.0
Lalb_Chr19g0139591 Lupinus albus HOM05D003806 ORTHO05D004346 4.1e-33 148.3 613 31.8
Medtr4g076030 Medicago truncatula HOM05D003806 ORTHO05D004346 9.2e-33 147.1 615 33.2
PGR031G3264 Punica granatum HOM05D003806 ORTHO05D004346 3.9e-31 141.7 1179 39.0
Sabra06G0015000 Salix brachista HOM05D003806 ORTHO05D004346 5.0e-31 141.4 348 35.1
Nitab4.5_0002232g0030 Nicotiana tabacum HOM05D003806 ORTHO05D004346 1.1e-30 140.2 989 34.3
Actinidia12514 Actinidia chinensis HOM05D003806 ORTHO05D004346 4.3e-30 138.3 303 37.0
ClCG07G010910 Citrullus lanatus HOM05D003806 ORTHO05D004346 1.2e-29 136.7 1576 33.8
BraA05t20242Z Brassica rapa HOM05D003806 ORTHO05D004346 2.1e-29 136.0 1470 45.8
CsaV3_4G007390 Cucumis sativus L. HOM05D003806 ORTHO05D004346 6.2e-29 134.4 1486 31.2
Phvul.011G024500 Phaseolus vulgaris HOM05D003806 ORTHO05D004346 1.1e-28 133.7 612 32.8
FAN14G1588 Fragaria x ananassa HOM05D003806 ORTHO05D004346 3.1e-28 132.1 630 32.1
FAN14G4911 Fragaria x ananassa HOM05D003806 ORTHO05D004346 3.1e-28 132.1 630 32.1
Aqoxy1G01455 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 4.0e-28 131.7 450 31.1
MSTRG.6602 Avicennia marina HOM05D003806 ORTHO05D004346 1.2e-27 130.2 616 32.3
ECA246G1737 Erigeron canadensis HOM05D003806 ORTHO05D004346 3.7e-26 125.2 360 32.5
Thhalv10006865m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 6.4e-26 124.4 418 32.3
CARHR004810 Cardamine hirsuta HOM05D003806 ORTHO05D004346 1.4e-25 123.2 333 43.8
TPR.G21252 Trifolium pratense HOM05D003806 ORTHO05D004346 5.4e-25 121.3 955 43.8
Sopen07g022880 Solanum pennellii HOM05D003806 ORTHO05D004346 1.6e-24 119.8 610 24.8
Lj3g0015803 Lotus japonicus HOM05D003806 ORTHO05D004346 2.0e-24 119.4 536 34.0
MELO3C016203.2 Cucumis melo HOM05D003806 ORTHO05D004346 3.5e-24 118.6 279 33.0
CDE05G0051 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 4.6e-24 118.2 540 26.3
MSTRG.14879 Avicennia marina HOM05D003806 ORTHO05D004346 2.3e-23 115.9 619 26.0
Sed0003037 Sechium edule HOM05D003806 ORTHO05D004346 1.5e-22 113.2 814 27.1
vmacro08755 Vaccinium macrocarpon HOM05D003806 ORTHO05D004346 1.5e-22 113.2 700 49.1
BraA09t42077Z Brassica rapa HOM05D003806 ORTHO05D004346 4.3e-22 111.7 581 34.6
CDE02G3965 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 5.6e-22 111.3 488 26.4
Migut.M00098 Erythranthe guttata HOM05D003806 ORTHO05D004346 2.8e-21 109.0 982 41.3
C08p51770 Brassica napus HOM05D003806 ORTHO05D004346 3.6e-21 108.6 326 43.3
CSS0042337 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 3.6e-21 108.6 206 39.3
A09p67490 Brassica napus HOM05D003806 ORTHO05D004346 1.4e-20 106.7 581 34.1
EL10Ac2g03814 Beta vulgaris HOM05D003806 ORTHO05D004346 8.3e-18 97.4 415 25.1
Actinidia12513 Actinidia chinensis HOM05D003806 ORTHO05D004346 1.4e-17 96.7 98 59.2
Aa31LG1G19290 Aethionema arabicum HOM05D003806 ORTHO05D004346 1.9e-17 96.3 132 50.0
Aa31LG1G19380 Aethionema arabicum HOM05D003806 ORTHO05D004346 1.9e-17 96.3 132 50.0
Oeu003096.1 Olea europaea HOM05D003806 ORTHO05D004346 2.4e-17 95.9 609 38.3
Oeu048050.1 Olea europaea HOM05D003806 ORTHO05D004346 3.2e-17 95.5 197 36.5
AUR62009108 Chenopodium quinoa HOM05D003806 ORTHO05D004346 4.1e-17 95.1 421 29.7
TAR624G1065 Trochodendron aralioides HOM05D003806 ORTHO05D004346 1.3e-15 90.1 171 36.8
ATR0763G047 Amborella trichopoda HOM05D003806 ORTHO05D004346 2.3e-15 89.4 216 33.8
BolC8t52706H Brassica oleracea HOM05D003806 ORTHO05D004346 3.0e-15 89.0 312 41.3
SGA_v2.0_scaffold73G24430 Striga asiatica HOM05D003806 ORTHO05D004346 3.0e-15 89.0 441 26.3
Hund19432 Selenicereus undatus HOM05D003806 ORTHO05D004346 2.5e-14 85.9 183 33.9
BcaC09g49104 Brassica carinata HOM05D003806 ORTHO05D004346 7.3e-14 84.3 95 54.7
Oeu021135.1 Olea europaea HOM05D003806 ORTHO05D004346 8.1e-13 80.9 219 33.3
AUR62020559 Chenopodium quinoa HOM05D003806 ORTHO05D004346 5.2e-12 78.2 231 29.9
AUR62020563 Chenopodium quinoa HOM05D003806 ORTHO05D004346 5.2e-12 78.2 231 29.9
AUR62043599 Chenopodium quinoa HOM05D003806 ORTHO05D004346 5.2e-12 78.2 231 29.9
AUR62043987 Chenopodium quinoa HOM05D003806 ORTHO05D004346 5.2e-12 78.2 231 29.9
Aqoxy7G02954 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 3.4e-11 75.5 545 26.8
CANSAT64G1444 Cannabis sativa HOM05D003806 ORTHO05D004346 5.8e-11 74.7 1327 38.0
Actinidia31596 Actinidia chinensis HOM05D003806 ORTHO05D004346 3.8e-10 72.0 141 39.0
CANSAT64G1938 Cannabis sativa HOM05D003806 ORTHO05D004346 4.9e-10 71.6 172 34.9
Sc23g0004300 Simmondsia chinensis HOM05D003806 ORTHO05D004346 1.1e-09 70.5 98 45.9
SalBow7G1206 Salvia bowleyana HOM05D003806 ORTHO05D004346 7.1e-09 67.8 166 33.1
HanXRQChr06g0171661 Helianthus annuus HOM05D003806 ORTHO05D004346 9.2e-09 67.4 360 26.7
Ah.11g044370 Amaranthus hybridus HOM05D003806 ORTHO05D004346 3.5e-08 65.5 87 46.0
Os04g0614650 Oryza sativa ssp. japonica HOM05D003806 ORTHO05D004346 3.5e-08 65.5 294 27.6
unitig_8.g4605 Utricularia gibba HOM05D001005 ORTHO05D000836 1.0e-07 63.9 298 25.5
BcaC07g42136 Brassica carinata HOM05D003806 ORTHO05D004346 5.1e-07 61.6 338 38.5
C01p42510 Brassica napus HOM05D003806 ORTHO05D004346 8.7e-07 60.8 120 39.2
Peaxi162Scf00141g01119 Petunia axillaris HOM05D001948 ORTHO05D001873 8.7e-07 60.8 78 48.7
MD09G1138300 Malus domestica HOM05D003806 ORTHO05D004346 3.3e-06 58.9 112 36.6


User provided reference genes

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