Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG5G3520 Aethionema arabicum HOM05D004913 ORTHO05D006150 5.0e-100 368.6 198 100.0
Sp2g08510 Schrenkiella parvula HOM05D004913 ORTHO05D006150 1.1e-86 324.3 198 88.9
AL37U10050 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 9.1e-86 321.2 198 88.4
Carub.0008s0491 Capsella rubella HOM05D004913 ORTHO05D006150 9.1e-86 321.2 198 86.9
Thhalv10003245m.g Eutrema salsugineum HOM05D004913 ORTHO05D006150 1.2e-85 320.9 199 88.4
CARHR179900 Cardamine hirsuta HOM05D004913 ORTHO05D006150 3.4e-85 319.3 198 88.4
BcaC06g31682 Brassica carinata HOM05D004913 ORTHO05D006150 7.7e-85 318.2 198 87.9
AT5G43720 Arabidopsis thaliana HOM05D004913 ORTHO05D006150 1.3e-84 317.4 198 87.4
C07p26280 Brassica napus HOM05D004913 ORTHO05D006150 5.0e-84 315.5 198 86.4
BolC7t43157H Brassica oleracea HOM05D004913 ORTHO05D006150 6.5e-84 315.1 198 85.9
BraA06t27642Z Brassica rapa HOM05D004913 ORTHO05D006150 9.4e-83 311.2 199 86.9
A06p47740 Brassica napus HOM05D004913 ORTHO05D006150 2.1e-82 310.1 199 86.4
THA.LOC104815979 Tarenaya hassleriana HOM05D004913 ORTHO05D006150 3.9e-81 305.8 198 84.3
AL1G13830 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 7.4e-80 301.6 199 83.9
BcaC03g16589 Brassica carinata HOM05D004913 ORTHO05D006150 3.1e-78 296.2 198 83.8
C02p44080 Brassica napus HOM05D004913 ORTHO05D006150 3.1e-78 296.2 198 83.8
BolC2t10451H Brassica oleracea HOM05D004913 ORTHO05D006150 7.0e-78 295.0 198 83.3
A02p27910 Brassica napus HOM05D004913 ORTHO05D006150 2.6e-77 293.1 198 82.8
BraA02t07829Z Brassica rapa HOM05D004913 ORTHO05D006150 2.6e-77 293.1 198 82.8
THA.LOC104826068 Tarenaya hassleriana HOM05D004913 ORTHO05D006150 2.2e-76 290.0 198 80.3
AT1G04230 Arabidopsis thaliana HOM05D004913 ORTHO05D006150 6.5e-76 288.5 199 80.4
CARHR003560 Cardamine hirsuta HOM05D004913 ORTHO05D006150 2.7e-74 283.1 199 78.9
Carub.0001s0342 Capsella rubella HOM05D004913 ORTHO05D006150 1.0e-73 281.2 198 77.8
Cpa.g.sc58.23 Carica papaya HOM05D004913 ORTHO05D006150 1.1e-72 277.7 198 75.8
Manes.15G035800 Manihot esculenta HOM05D004913 ORTHO05D006150 1.3e-71 274.2 200 75.0
Thecc.04G244000 Theobroma cacao HOM05D004913 ORTHO05D006150 1.7e-71 273.9 200 75.5
Duzib052G0554 Durio zibethinus HOM05D004913 ORTHO05D006150 3.7e-71 272.7 200 75.0
GSVIVG01018096001 Vitis vinifera HOM05D004913 ORTHO05D006150 6.3e-71 271.9 198 74.2
RcHm_v2.0_Chr5g0043971 Rosa chinensis HOM05D004913 ORTHO05D006150 2.4e-70 270.0 198 75.8
Ciclev10005381m.g Citrus clementina HOM05D004913 ORTHO05D006150 4.1e-70 269.2 200 75.5
CSS0025455 Camellia sinensis var. sinensis HOM05D004913 ORTHO05D006150 7.0e-70 268.5 205 72.2
CiPaw.02G117800 Carya illinoinensis HOM05D004913 ORTHO05D006150 7.0e-70 268.5 198 73.2
Eucgr.H03172 Eucalyptus grandis HOM05D004913 ORTHO05D006150 1.6e-69 267.3 198 75.3
Gorai.006G070100 Gossypium raimondii HOM05D004913 ORTHO05D006150 1.6e-69 267.3 200 74.0
Duzib151G0562 Durio zibethinus HOM05D004913 ORTHO05D006150 2.0e-69 266.9 200 72.5
CSS0009777 Camellia sinensis var. sinensis HOM05D004913 ORTHO05D003182 3.5e-69 266.2 206 71.4
Gohir.D10G152000 Gossypium hirsutum HOM05D004913 ORTHO05D006150 4.5e-69 265.8 200 73.0
Gorai.011G170500 Gossypium raimondii HOM05D004913 ORTHO05D006150 4.5e-69 265.8 200 73.0
PGR004G2231 Punica granatum HOM05D004913 ORTHO05D006150 7.7e-69 265.0 198 74.2
Gohir.A10G114500 Gossypium hirsutum HOM05D004913 ORTHO05D006150 1.7e-68 263.8 200 72.5
TAR636G2191 Trochodendron aralioides HOM05D004913 ORTHO05D006150 2.2e-68 263.5 199 72.4
vmacro15402 Vaccinium macrocarpon HOM05D004913 ORTHO05D006150 2.9e-68 263.1 204 71.1
Gohir.A09G057300 Gossypium hirsutum HOM05D004913 ORTHO05D006150 6.5e-68 261.9 198 72.2
Oeu032612.1 Olea europaea HOM05D004913 ORTHO05D006150 6.5e-68 261.9 202 71.3
Haze_11271 Corylus avellana HOM05D004913 ORTHO05D006150 8.5e-68 261.5 202 71.8
MD13G1204100 Malus domestica HOM05D004913 ORTHO05D006150 8.5e-68 261.5 198 71.2
MBI11_g38514_MAGBIO Magnolia biondii HOM05D004913 ORTHO05D006150 1.9e-67 260.4 199 69.8
AL8G16560 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 2.5e-67 260.0 162 87.7
CsaV3_3G012680 Cucumis sativus L. HOM05D004913 ORTHO05D006150 5.5e-67 258.8 198 70.7
Manes.03G170000 Manihot esculenta HOM05D004913 ORTHO05D006150 7.2e-67 258.5 200 71.5
Potri.008G160800 Populus trichocarpa HOM05D004913 ORTHO05D006150 1.6e-66 257.3 203 69.0
MSTRG.21888 Avicennia marina HOM05D004913 ORTHO05D006150 2.1e-66 256.9 203 68.5
QL06p015098 Quercus lobata HOM05D004913 ORTHO05D006150 2.7e-66 256.5 198 69.7
Sabra08G0122700 Salix brachista HOM05D004913 ORTHO05D006150 2.7e-66 256.5 203 70.0
Solyc09g083270.4 Solanum lycopersicum HOM05D004913 ORTHO05D006150 4.7e-66 255.8 201 71.6
Sopen09g032190 Solanum pennellii HOM05D004913 ORTHO05D006150 4.7e-66 255.8 201 71.6
PGSC0003DMG400006092 Solanum tuberosum HOM05D004913 ORTHO05D006150 4.7e-66 255.8 201 71.6
MD16G1206200 Malus domestica HOM05D004913 ORTHO05D006150 6.1e-66 255.4 198 69.7
Potri.010G078500 Populus trichocarpa HOM05D004913 ORTHO05D006150 8.0e-66 255.0 204 69.6
Sed0018032 Sechium edule HOM05D004913 ORTHO05D003182 1.0e-65 254.6 198 69.7
SGA_v2.0_scaffold101G29779 Striga asiatica HOM05D004913 ORTHO05D006150 1.0e-65 254.6 204 70.6
CAN.G626.13 Capsicum annuum HOM05D004913 ORTHO05D006150 1.8e-65 253.8 199 69.8
Sed0027984 Sechium edule HOM05D004913 ORTHO05D006150 1.8e-65 253.8 200 69.5
Lj3A719T118 Lonicera japonica HOM05D004913 ORTHO05D006150 4.0e-65 252.7 203 69.0
CANSAT78G1520 Cannabis sativa HOM05D004913 ORTHO05D006150 1.2e-64 251.1 198 69.2
FvH4_3g24470 Fragaria vesca HOM05D004913 ORTHO05D006150 1.2e-64 251.1 198 71.7
Nn1g02556 Nelumbo nucifera HOM05D004913 ORTHO05D006150 3.7e-63 246.1 192 70.8
Migut.N00232 Erythranthe guttata HOM05D004913 ORTHO05D006150 6.3e-63 245.4 203 64.5
TWI09G0491 Tripterygium wilfordii HOM05D004913 ORTHO05D006150 9.1e-62 241.5 198 68.2
PSO210G5612 Papaver somniferum HOM05D004913 ORTHO05D006150 1.2e-61 241.1 200 67.0
MELO3C006479.2 Cucumis melo HOM05D004913 ORTHO05D006150 1.6e-61 240.7 234 59.4
Nitab4.5_0000525g0090 Nicotiana tabacum HOM05D004913 ORTHO05D006150 2.7e-61 240.0 207 63.8
TWI73G0814 Tripterygium wilfordii HOM05D004913 ORTHO05D006150 3.5e-61 239.6 198 68.2
Phvul.003G138434 Phaseolus vulgaris HOM05D004913 ORTHO05D006150 4.5e-61 239.2 200 67.0
Nitab4.5_0004203g0050 Nicotiana tabacum HOM05D004913 ORTHO05D006150 7.7e-61 238.4 205 62.9
Prupe.1G027200 Prunus persica HOM05D004913 ORTHO05D006150 7.7e-61 238.4 199 66.8
VMungo0720G1087 Vigna mungo HOM05D004913 ORTHO05D006150 7.7e-61 238.4 200 67.0
Dinv44614 Davidia involucrata HOM05D004913 ORTHO05D006150 1.7e-60 237.3 202 67.8
FAN11G1852 Fragaria x ananassa HOM05D004913 ORTHO05D006150 6.5e-60 235.3 198 68.7
PSO832G0934 Papaver somniferum HOM05D004913 ORTHO05D006150 1.1e-59 234.6 212 63.7
Cc03_g04640 Coffea canephora HOM05D004913 ORTHO05D006150 1.9e-59 233.8 189 67.7
Glyma.10G179800 Glycine max HOM05D004913 ORTHO05D006150 5.5e-59 232.3 200 65.5
FAN16G1149 Fragaria x ananassa HOM05D004913 ORTHO05D006150 3.6e-58 229.6 198 68.2
Peaxi162Scf01416g00120 Petunia axillaris HOM05D004913 ORTHO05D006150 4.7e-58 229.2 204 61.3
arahy.Tifrunner.gnm1.ann1.8JLR9N Arachis hypogaea HOM05D004913 ORTHO05D006150 1.4e-57 227.6 202 63.9
EL10Ac4g07493 Beta vulgaris HOM05D004913 ORTHO05D006150 1.4e-57 227.6 202 63.4
Rhsim02G0032600 Rhododendron simsii HOM05D004913 ORTHO05D006150 1.4e-57 227.6 205 64.4
Actinidia05471 Actinidia chinensis HOM05D004913 ORTHO05D006150 1.8e-57 227.3 190 67.4
Glyma.20G210600 Glycine max HOM05D004913 ORTHO05D006150 1.8e-57 227.3 205 63.9
SalBow3G1711 Salvia bowleyana HOM05D004913 ORTHO05D006150 1.8e-57 227.3 218 58.7
arahy.Tifrunner.gnm1.ann1.9S1KBE Arachis hypogaea HOM05D004913 ORTHO05D006150 2.3e-57 226.9 202 63.9
Gohir.D09G056500 Gossypium hirsutum HOM05D004913 ORTHO05D006150 6.8e-57 225.3 149 79.2
BcaC06g34634 Brassica carinata HOM05D004913 ORTHO05D006150 2.0e-56 223.8 145 85.5
Lsat_1_v5_gn_5_67500 Lactuca sativa HOM05D004913 ORTHO05D006150 5.7e-56 222.2 200 64.0
unitig_0.g131 Utricularia gibba HOM05D004913 ORTHO05D006150 9.8e-56 221.5 200 60.0
Lalb_Chr21g0311951 Lupinus albus HOM05D004913 ORTHO05D006150 3.7e-55 219.5 200 61.5
FAN25G1200 Fragaria x ananassa HOM05D004913 ORTHO05D006150 8.3e-55 218.4 198 66.2
FAN25G2316 Fragaria x ananassa HOM05D004913 ORTHO05D006150 1.1e-54 218.0 198 65.7
HanXRQChr12g0381181 Helianthus annuus HOM05D004913 ORTHO05D006150 7.0e-54 215.3 200 63.5
AUR62041210 Chenopodium quinoa HOM05D004913 ORTHO05D006150 9.2e-54 214.9 198 63.1
Lj5g0012164 Lotus japonicus HOM05D004913 ORTHO05D006150 9.2e-54 214.9 201 63.7
Lalb_Chr06g0168981 Lupinus albus HOM05D004913 ORTHO05D006150 1.2e-53 214.5 203 62.1
Migut.G00417 Erythranthe guttata HOM05D004913 ORTHO05D006150 1.6e-53 214.2 195 63.1
DCAR_030710 Daucus carota HOM05D004913 ORTHO05D006150 5.9e-53 212.2 204 61.8
Sc13g0004930 Simmondsia chinensis HOM05D004913 ORTHO05D006150 5.9e-53 212.2 148 75.0
CDE04G3353 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 7.7e-53 211.8 198 59.6
ECA233G3913 Erigeron canadensis HOM05D004913 ORTHO05D006150 6.6e-52 208.8 195 60.5
ATR0665G449 Amborella trichopoda HOM05D004913 ORTHO05D006150 8.6e-52 208.4 203 57.1
FAN21G0973 Fragaria x ananassa HOM05D004913 ORTHO05D006150 1.1e-51 208.0 198 63.6
Medtr1g076290 Medicago truncatula HOM05D004913 ORTHO05D006150 1.1e-51 208.0 198 61.6
Ca_09877_v3 Cicer arietinum L. HOM05D004913 ORTHO05D006150 1.9e-51 207.2 199 61.8
AagrBONN_evm.TU.Sc2ySwM_362.2200 Anthoceros agrestis HOM05D004913 ORTHO05D006150 3.3e-51 206.5 206 57.8
CDE07G0872 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 3.3e-51 206.5 198 59.1
Psat6g114920 Pisum sativum HOM05D004913 ORTHO05D006150 4.3e-51 206.1 198 61.6
Aqoxy2G03527 Aquilegia oxysepala HOM05D004913 ORTHO05D006150 4.7e-50 202.6 185 62.2
AUR62040390 Chenopodium quinoa HOM05D004913 ORTHO05D006150 1.2e-48 198.0 146 71.2
HPP92_014140 Vanilla planifolia HOM05D004913 ORTHO05D006150 1.7e-47 194.1 194 60.8
Zm00001eb212900 Zea mays HOM05D004913 ORTHO05D006150 8.3e-47 191.8 195 55.9
CDE06G2453 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 1.6e-45 187.6 197 55.8
Hund17874 Selenicereus undatus HOM05D004913 ORTHO05D006150 3.5e-45 186.4 198 55.1
Os03g0797700 Oryza sativa ssp. japonica HOM05D004913 ORTHO05D006150 4.3e-43 179.5 156 60.9
Mapoly0010s0154 Marchantia polymorpha HOM05D004913 ORTHO05D006150 9.5e-43 178.3 214 53.7
CDE07G2030 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 3.6e-42 176.4 194 53.6
Pp3c2_37690 Physcomitrium patens HOM05D004913 ORTHO05D006150 6.2e-42 175.6 209 50.2
PSO210G2862 Papaver somniferum HOM05D004913 ORTHO05D006150 2.3e-41 173.7 203 52.7
PSO238G0009 Papaver somniferum HOM05D004913 ORTHO05D006150 2.0e-40 170.6 203 51.7
SMO358G0388 Selaginella moellendorffii HOM05D004913 ORTHO05D006150 1.7e-39 167.5 209 50.2
SEGI_31281 Sequoiadendron giganteum HOM05D004913 ORTHO05D006150 2.0e-37 160.6 150 56.0
COL.COLO4_15768 Corchorus olitorius HOM05D000979 ORTHO05D003182 2.5e-35 153.7 200 49.5
ClCG05G004680 Citrullus lanatus HOM05D000979 ORTHO05D003182 3.6e-34 149.8 129 67.4
SHI00581 Sapria himalayana HOM05D004913 ORTHO05D006150 5.2e-33 146.0 140 62.1
CBR_g525 Chara braunii HOM05D004913 ORTHO05D006150 3.6e-26 123.2 139 48.2
Ah.13g071550 Amaranthus hybridus HOM05D004913 ORTHO05D006150 1.4e-22 111.3 95 66.3
SMO347G0406 Selaginella moellendorffii HOM05D004913 ORTHO05D006150 9.2e-22 108.6 167 41.9
Ah.13g071540 Amaranthus hybridus HOM05D004913 ORTHO05D006150 1.2e-18 98.2 60 76.7
Zm00001eb034960 Zea mays HOM05D004913 ORTHO05D006150 1.9e-14 84.3 87 56.3
TAR365G1176 Trochodendron aralioides HOM05D004913 ORTHO05D006150 2.8e-10 70.5 46 67.4
MCO11G351 Micromonas commoda HOM05D004913 ORTHO05D006150 5.3e-09 66.2 147 34.7
BcaC06g34635 Brassica carinata HOM05D004913 ORTHO05D006150 1.5e-08 64.7 34 94.1
Cre10.g452600 Chlamydomonas reinhardtii HOM05D004913 ORTHO05D006150 1.3e-07 61.6 229 27.9
GSVIVG01034858001 Vitis vinifera HOM05D004913 ORTHO05D006150 4.9e-07 59.7 60 58.3


User provided reference genes

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