Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG5G21740 Aethionema arabicum HOM05D000533 ORTHO05D001069 4.7e-82 307.8 151 100.0
arahy.Tifrunner.gnm1.ann1.RF9S3R Arachis hypogaea HOM05D000533 ORTHO05D001069 1.5e-24 116.7 200 41.5
EL10Ac1g02290 Beta vulgaris HOM05D000533 ORTHO05D001069 3.8e-23 112.1 175 43.4
EL10Ac6g14289 Beta vulgaris HOM05D000533 ORTHO05D001069 3.8e-23 112.1 175 43.4
EL10Ac9g21011 Beta vulgaris HOM05D000533 ORTHO05D001069 3.8e-23 112.1 175 43.4
Gohir.A13G086335 Gossypium hirsutum HOM05D000533 ORTHO05D001069 9.4e-22 107.5 175 43.4
Lsat_1_v5_gn_5_66001 Lactuca sativa HOM05D000533 ORTHO05D001069 1.6e-21 106.7 174 42.5
ATCG01110 Arabidopsis thaliana HOM05D000533 ORTHO05D001069 3.6e-21 105.5 210 40.0
C05p53840 Brassica napus HOM05D000533 ORTHO05D001069 3.6e-21 105.5 210 40.0
C07p33470 Brassica napus HOM05D000533 ORTHO05D001069 3.6e-21 105.5 210 40.0
C09p40300 Brassica napus HOM05D000533 ORTHO05D001069 3.6e-21 105.5 210 40.0
BolSC29t60510H Brassica oleracea HOM05D000533 ORTHO05D001069 3.6e-21 105.5 210 40.0
BolSC35t60708H Brassica oleracea HOM05D000533 ORTHO05D001069 3.6e-21 105.5 210 40.0
BolSC37t60797H Brassica oleracea HOM05D000533 ORTHO05D001069 3.6e-21 105.5 210 40.0
BraSC138t45531Z Brassica rapa HOM05D000533 ORTHO05D001069 3.6e-21 105.5 210 40.0
BraSC143t45656Z Brassica rapa HOM05D000533 ORTHO05D001069 3.6e-21 105.5 210 40.0
BraSC25t45914Z Brassica rapa HOM05D000533 ORTHO05D001069 3.6e-21 105.5 210 40.0
BraSC59t46554Z Brassica rapa HOM05D000533 ORTHO05D001069 3.6e-21 105.5 210 40.0
CAN.G378.10 Capsicum annuum HOM05D000533 ORTHO05D001069 3.6e-21 105.5 175 40.0
Lsat_1_v5_gn_5_821 Lactuca sativa HOM05D000533 ORTHO05D001069 4.7e-21 105.1 174 43.7
Gohir.1Z050466 Gossypium hirsutum HOM05D000533 ORTHO05D001069 1.8e-20 103.2 202 38.6
AL9U11960 Arabidopsis lyrata HOM05D000533 ORTHO05D001069 2.3e-20 102.8 139 48.9
Hma1.2p1_0660F.1_g197430 Hydrangea macrophylla HOM05D000533 ORTHO05D001069 5.2e-20 101.7 210 38.6
Lj2C1238G31 Lonicera japonica HOM05D000533 ORTHO05D001069 6.7e-20 101.3 210 37.6
Lju5009C0T5 Lonicera japonica HOM05D000533 ORTHO05D001069 6.7e-20 101.3 210 37.6
DCAR_032542 Daucus carota HOM05D000533 ORTHO05D001069 8.8e-20 100.9 210 38.1
SabraPtG0005900 Salix brachista HOM05D000533 ORTHO05D001069 1.1e-19 100.5 149 47.0
Gorai.004G123700 Gossypium raimondii HOM05D000533 ORTHO05D001069 2.0e-19 99.8 143 46.9
LjContig00318g0022363 Lotus japonicus HOM05D000533 ORTHO05D001069 2.0e-19 99.8 210 37.6
LjContig00319g0004717 Lotus japonicus HOM05D000533 ORTHO05D001069 2.0e-19 99.8 210 37.6
Psat0s6989g0240 Pisum sativum HOM05D000533 ORTHO05D001069 2.0e-19 99.8 210 37.1
TAR625G0265 Trochodendron aralioides HOM05D000533 ORTHO05D001069 2.0e-19 99.8 210 38.1
ECA074G0013 Erigeron canadensis HOM05D000533 ORTHO05D001069 2.6e-19 99.4 210 37.6
HanXRQChr00c0336g0573701 Helianthus annuus HOM05D000533 ORTHO05D001069 2.6e-19 99.4 210 37.6
HanXRQChr02g0059741 Helianthus annuus HOM05D000533 ORTHO05D001069 2.6e-19 99.4 210 37.6
HanXRQChr09g0258481 Helianthus annuus HOM05D000533 ORTHO05D001069 2.6e-19 99.4 210 37.6
HanXRQChr15g0465421 Helianthus annuus HOM05D000533 ORTHO05D001069 2.6e-19 99.4 210 37.6
HanXRQChr15g0465471 Helianthus annuus HOM05D000533 ORTHO05D001069 2.6e-19 99.4 210 37.6
HanXRQChr17g0557731 Helianthus annuus HOM05D000533 ORTHO05D001069 2.6e-19 99.4 210 37.6
HanXRQChr17g0569711 Helianthus annuus HOM05D000533 ORTHO05D001069 2.6e-19 99.4 210 37.6
HanXRQCPg0580331 Helianthus annuus HOM05D000533 ORTHO05D001069 2.6e-19 99.4 210 37.6
Lsat_1_v5_gn_4_33860 Lactuca sativa HOM05D000533 ORTHO05D001069 2.6e-19 99.4 210 37.6
Lsat_1_v5_gn_9_115440 Lactuca sativa HOM05D000533 ORTHO05D001069 2.6e-19 99.4 210 37.6
Sabra10G0056200 Salix brachista HOM05D000533 ORTHO05D001069 2.6e-19 99.4 149 46.3
Gohir.A04G053078 Gossypium hirsutum HOM05D000533 ORTHO05D001069 4.4e-19 98.6 182 39.6
PSO548G0122 Papaver somniferum HOM05D000533 ORTHO05D001069 4.4e-19 98.6 210 37.1
Sed0015694 Sechium edule HOM05D000533 ORTHO05D001069 4.4e-19 98.6 221 34.8
PGR111G0062 Punica granatum HOM05D000533 ORTHO05D001069 9.7e-19 97.4 210 37.1
Gohir.1Z049694 Gossypium hirsutum HOM05D000533 ORTHO05D001069 1.3e-18 97.1 210 36.7
Lalb_Chr07g0191821 Lupinus albus HOM05D000533 ORTHO05D001069 1.7e-18 96.7 210 37.6
Psat1g050080 Pisum sativum HOM05D000533 ORTHO05D001069 1.7e-18 96.7 210 36.7
HanXRQChr17g0569761 Helianthus annuus HOM05D000533 ORTHO05D001069 3.7e-18 95.5 180 41.1
Solyc00g500087.1 Solanum lycopersicum HOM05D000533 ORTHO05D001069 3.7e-18 95.5 210 37.1
Solyc00g500124.1 Solanum lycopersicum HOM05D000533 ORTHO05D001069 3.7e-18 95.5 210 37.1
Solyc00g500192.1 Solanum lycopersicum HOM05D000533 ORTHO05D001069 3.7e-18 95.5 210 37.1
FvH4_c3g00020 Fragaria vesca HOM05D000533 ORTHO05D001069 6.3e-18 94.7 210 36.2
QL93p0141_0008 Quercus lobata HOM05D000533 ORTHO05D001069 6.3e-18 94.7 210 36.7
Medtr2g451380 Medicago truncatula HOM05D000533 ORTHO05D001069 8.2e-18 94.4 181 38.7
Medtr4g006100 Medicago truncatula HOM05D000533 ORTHO05D001069 8.2e-18 94.4 210 36.2
ATR0924G001 Amborella trichopoda HOM05D000533 ORTHO05D001069 1.1e-17 94.0 174 40.2
FAN01G2373 Fragaria x ananassa HOM05D000533 ORTHO05D001069 1.1e-17 94.0 174 39.7
Psat0s1160g0320 Pisum sativum HOM05D000533 ORTHO05D001069 1.8e-17 93.2 174 39.7
Ah.10g027260 Amaranthus hybridus HOM05D000533 ORTHO05D001069 2.4e-17 92.8 210 35.7
Ah.10g027700 Amaranthus hybridus HOM05D000533 ORTHO05D001069 2.4e-17 92.8 210 35.7
Atru.chr5.1326 Acer truncatum HOM05D000533 ORTHO05D001069 3.1e-17 92.4 210 37.6
Gohir.D09G085250 Gossypium hirsutum HOM05D000533 ORTHO05D001069 3.1e-17 92.4 141 46.8
Medtr6g042200 Medicago truncatula HOM05D000533 ORTHO05D001069 3.1e-17 92.4 210 35.7
Ah.10g027020 Amaranthus hybridus HOM05D000533 ORTHO05D001069 7.0e-17 91.3 210 34.3
MBI10_g47589_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 7.0e-17 91.3 174 39.7
Gohir.D11G334151 Gossypium hirsutum HOM05D000533 ORTHO05D001069 1.6e-16 90.1 184 40.2
Sed0009234 Sechium edule HOM05D000533 ORTHO05D001069 4.5e-16 88.6 186 36.0
CAN.G1045.9 Capsicum annuum HOM05D000533 ORTHO05D001069 5.9e-16 88.2 170 38.8
FvH4_6g41620 Fragaria vesca HOM05D000533 ORTHO05D001069 5.9e-16 88.2 206 35.4
MELO3C027054.2 Cucumis melo HOM05D000533 ORTHO05D001069 1.0e-15 87.4 170 38.8
Lsat_1_v5_gn_8_137301 Lactuca sativa HOM05D000533 ORTHO05D001069 1.3e-15 87.0 205 36.1
MBI10_g47594_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 1.7e-15 86.7 173 38.7
Gohir.D08G207450 Gossypium hirsutum HOM05D000533 ORTHO05D001069 2.2e-15 86.3 166 39.2
CAN.G965.3 Capsicum annuum HOM05D000533 ORTHO05D001069 5.0e-15 85.1 196 34.7
Sed0022513 Sechium edule HOM05D000533 ORTHO05D001069 6.5e-15 84.7 169 37.3
Gorai.006G101200 Gossypium raimondii HOM05D000533 ORTHO05D001069 8.5e-15 84.3 141 45.4
SEGI_05748 Sequoiadendron giganteum HOM05D000216 ORTHO05D001131 8.5e-15 84.3 210 33.8
SEGI_26586 Sequoiadendron giganteum HOM05D000533 ORTHO05D001069 1.1e-14 84.0 210 33.8
Peaxi162Scf00030g02114 Petunia axillaris HOM05D000533 ORTHO05D001069 1.5e-14 83.6 251 32.3
SalBow1G1175 Salvia bowleyana HOM05D000533 ORTHO05D001069 1.9e-14 83.2 144 43.8
unitig_91.g26523 Utricularia gibba HOM05D000533 ORTHO05D001069 2.5e-14 82.8 206 34.5
Nitab4.5_0006502g0030 Nicotiana tabacum HOM05D000533 ORTHO05D001069 7.2e-14 81.3 161 38.5
Eucgr.B00847 Eucalyptus grandis HOM05D000533 ORTHO05D001069 1.6e-13 80.1 141 41.1
Gorai.013G076700 Gossypium raimondii HOM05D000533 ORTHO05D001069 3.6e-13 79.0 110 49.1
Hund28343 Selenicereus undatus HOM05D000533 ORTHO05D001069 4.7e-13 78.6 153 40.5
Hund29094 Selenicereus undatus HOM05D000533 ORTHO05D001069 4.7e-13 78.6 153 40.5
Hund30925 Selenicereus undatus HOM05D000533 ORTHO05D001069 4.7e-13 78.6 153 40.5
Sed0014804 Sechium edule HOM05D000533 ORTHO05D001069 6.1e-13 78.2 209 33.0
vmacro22393 Vaccinium macrocarpon HOM05D000533 ORTHO05D001069 8.0e-13 77.8 199 34.7
vmacro22419 Vaccinium macrocarpon HOM05D000533 ORTHO05D001069 8.0e-13 77.8 199 34.7
CSS0030738 Camellia sinensis var. sinensis HOM05D000533 ORTHO05D001069 1.0e-12 77.4 179 36.3
BolC5t34051H Brassica oleracea HOM05D000533 ORTHO05D001069 5.2e-12 75.1 55 78.2
BolSC35t60688H Brassica oleracea HOM05D000533 ORTHO05D001069 5.2e-12 75.1 55 78.2
arahy.Tifrunner.gnm1.ann1.EMA6B0 Arachis hypogaea HOM05D000533 ORTHO05D001069 6.7e-12 74.7 176 33.5
Peaxi162Scf00133g00521 Petunia axillaris HOM05D000533 ORTHO05D001069 1.2e-11 73.9 55 76.4
Psat5g037760 Pisum sativum HOM05D000533 ORTHO05D001069 1.2e-11 73.9 55 74.5
Solyc00g500280.1 Solanum lycopersicum HOM05D000533 ORTHO05D001069 1.2e-11 73.9 55 76.4
Gorai.009G313900 Gossypium raimondii HOM05D000533 ORTHO05D001069 1.5e-11 73.6 55 76.4
Medtr7g021700 Medicago truncatula HOM05D000533 ORTHO05D006151 1.5e-11 73.6 55 74.5
Nitab4.5_0006409g0080 Nicotiana tabacum HOM05D000533 ORTHO05D001069 1.5e-11 73.6 55 74.5
HanXRQChr00c0504g0575331 Helianthus annuus HOM05D000533 ORTHO05D001069 2.0e-11 73.2 55 74.5
Lsat_1_v5_gn_4_118061 Lactuca sativa HOM05D000533 ORTHO05D001069 2.0e-11 73.2 55 74.5
Lsat_1_v5_gn_5_124461 Lactuca sativa HOM05D000533 ORTHO05D001069 2.0e-11 73.2 55 74.5
Lsat_1_v5_gn_6_87021 Lactuca sativa HOM05D000533 ORTHO05D001069 2.0e-11 73.2 55 74.5
Lalb_Chr15g0080701 Lupinus albus HOM05D000533 ORTHO05D001069 2.0e-11 73.2 55 74.5
Nn029s41575 Nelumbo nucifera HOM05D000533 ORTHO05D001069 2.0e-11 73.2 55 74.5
Sopen04g017430 Solanum pennellii HOM05D000533 ORTHO05D001069 3.3e-11 72.4 55 74.5
BolC9t56912H Brassica oleracea HOM05D000533 ORTHO05D001069 4.4e-11 72.0 55 74.5
BolC9t56921H Brassica oleracea HOM05D000533 ORTHO05D001069 4.4e-11 72.0 55 74.5
BolC7t43858H Brassica oleracea HOM05D000533 ORTHO05D001069 9.7e-11 70.9 55 74.5
Atru.chr2.908 Acer truncatum HOM05D000533 ORTHO05D001069 1.3e-10 70.5 55 72.7
SEGI_36880 Sequoiadendron giganteum HOM05D000533 ORTHO05D001069 1.7e-10 70.1 179 34.6
SEGI_26516 Sequoiadendron giganteum HOM05D000533 ORTHO05D001069 2.2e-10 69.7 55 69.1
Psat7g150960 Pisum sativum HOM05D000533 ORTHO05D001069 3.7e-10 68.9 206 29.6
Solyc08g022170.1 Solanum lycopersicum HOM05D000533 ORTHO05D001069 4.8e-10 68.6 55 70.9
Nitab4.5_0000729g0120 Nicotiana tabacum HOM05D000533 ORTHO05D001069 8.2e-10 67.8 83 50.6
CAN.G1470.8 Capsicum annuum HOM05D000533 ORTHO05D001069 1.4e-09 67.0 51 74.5
Psat7g199400 Pisum sativum HOM05D000533 ORTHO05D001069 1.4e-09 67.0 140 37.1
RcHm_v2.0_Chr3g0470811 Rosa chinensis HOM05D000533 ORTHO05D001069 1.4e-09 67.0 55 67.3
Hund30658 Selenicereus undatus HOM05D000533 ORTHO05D001069 1.4e-09 67.0 118 42.4
DCAR_005908 Daucus carota HOM05D000533 ORTHO05D001069 1.8e-09 66.6 51 72.5
ClCG11G009630 Citrullus lanatus HOM05D000533 ORTHO05D001069 5.3e-09 65.1 51 70.6
Potri.013G074650 Populus trichocarpa HOM05D000533 ORTHO05D001069 5.3e-09 65.1 55 65.5
Phvul.004G015300 Phaseolus vulgaris HOM05D000533 ORTHO05D001069 9.1e-09 64.3 55 69.1
Oeu015129.1 Olea europaea HOM05D000533 ORTHO05D001069 1.2e-08 63.9 55 67.3
ClCG10G006000 Citrullus lanatus HOM05D000533 ORTHO05D001069 2.7e-08 62.8 173 32.4
arahy.Tifrunner.gnm1.ann1.JUM97N Arachis hypogaea HOM05D000533 ORTHO05D001069 3.5e-08 62.4 175 29.1
arahy.Tifrunner.gnm1.ann1.N9T5J4 Arachis hypogaea HOM05D000533 ORTHO05D001069 3.5e-08 62.4 102 41.2
SGA_v2.0_scaffold150G36657 Striga asiatica HOM05D000533 ORTHO05D002807 4.5e-08 62.0 136 38.2
Nitab4.5_0007400g0140 Nicotiana tabacum HOM05D000533 ORTHO05D001069 5.9e-08 61.6 54 64.8
Medtr4g117480 Medicago truncatula HOM05D000533 ORTHO05D001069 7.7e-08 61.2 51 66.7
AUR62043262 Chenopodium quinoa HOM05D000533 ORTHO05D001069 1.0e-07 60.8 135 34.8
Psat0s1920g0160 Pisum sativum HOM05D000533 ORTHO05D001069 1.3e-07 60.5 51 66.7
Glyma.18G155701 Glycine max HOM05D000533 ORTHO05D001069 1.7e-07 60.1 54 66.7
BolC2t08926H Brassica oleracea HOM05D000533 ORTHO05D001069 3.8e-07 58.9 37 78.4
Gohir.D08G108108 Gossypium hirsutum HOM05D000533 ORTHO05D001069 3.8e-07 58.9 124 35.5
BolSC45t60905H Brassica oleracea HOM05D000533 ORTHO05D001069 5.0e-07 58.5 37 78.4
BolSC49t61147H Brassica oleracea HOM05D000533 ORTHO05D001069 5.0e-07 58.5 37 78.4
BraSC59t46530Z Brassica rapa HOM05D000533 ORTHO05D001069 5.0e-07 58.5 37 78.4
ClCG07G012690 Citrullus lanatus HOM05D000533 ORTHO05D001069 5.0e-07 58.5 50 68.0
SMO086G0065 Selaginella moellendorffii HOM05D000533 ORTHO05D001069 3.2e-06 55.8 54 57.4
Eucgr.F01268 Eucalyptus grandis HOM05D000533 ORTHO05D001069 5.5e-06 55.1 53 64.2
Gohir.A01G140323 Gossypium hirsutum HOM05D000533 ORTHO05D001069 9.4e-06 54.3 40 77.5
HanXRQChr11g0321231 Helianthus annuus HOM05D000533 ORTHO05D001069 9.4e-06 54.3 39 74.4
Nn1g08631 Nelumbo nucifera HOM05D000533 ORTHO05D001069 9.4e-06 54.3 87 40.2


User provided reference genes

Program Settings