Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG5G21550 Aethionema arabicum HOM05D006439 ORTHO05D008152 0.0e+00 1782.7 908 100.0
AL4G32530 Arabidopsis lyrata HOM05D006439 ORTHO05D008152 0.0e+00 1240.7 959 69.0
AT2G36370 Arabidopsis thaliana HOM05D006439 ORTHO05D008152 0.0e+00 1225.7 962 67.7
BolC4t28018H Brassica oleracea HOM05D006439 ORTHO05D008152 0.0e+00 1201.4 957 68.0
Thhalv10017885m.g Eutrema salsugineum HOM05D006439 ORTHO05D008152 0.0e+00 1196.4 888 70.8
BcaC02g07604 Brassica carinata HOM05D006439 ORTHO05D008152 0.0e+00 1196.0 957 67.8
BcaB06g28933 Brassica carinata HOM05D006439 ORTHO05D008152 0.0e+00 1172.9 989 64.9
A04p27880 Brassica napus HOM05D006439 ORTHO05D008152 0.0e+00 1155.6 887 69.6
BraA04t18280Z Brassica rapa HOM05D006439 ORTHO05D008152 0.0e+00 1154.4 887 69.7
CARHR130670 Cardamine hirsuta HOM05D006439 ORTHO05D008152 0.0e+00 1135.9 950 65.7
THA.LOC104823488 Tarenaya hassleriana HOM05D006439 ORTHO05D008152 0.0e+00 1078.2 962 59.8
Sp4g18660 Schrenkiella parvula HOM05D006439 ORTHO05D008152 1.2e-310 1069.7 755 74.4
Gorai.007G371000 Gossypium raimondii HOM05D006439 ORTHO05D008152 2.1e-246 856.3 973 49.1
QL07p039851 Quercus lobata HOM05D006439 ORTHO05D008152 9.3e-242 840.9 980 48.4
CiPaw.09G010200 Carya illinoinensis HOM05D006439 ORTHO05D008152 5.9e-236 821.6 973 47.4
GSVIVG01033817001 Vitis vinifera HOM05D006439 ORTHO05D008152 5.0e-235 818.5 1017 46.1
Cfa016567 Carpinus fangiana HOM05D006439 ORTHO05D008152 2.1e-233 813.1 968 48.1
MD12G1021400 Malus domestica HOM05D006439 ORTHO05D008152 1.8e-232 810.1 982 47.6
Gohir.A11G321900 Gossypium hirsutum HOM05D006439 ORTHO05D008152 8.8e-232 807.7 911 49.2
Prupe.7G115000 Prunus persica HOM05D006439 ORTHO05D008152 5.3e-229 798.5 968 47.5
TWI74G0883 Tripterygium wilfordii HOM05D006439 ORTHO05D008152 4.2e-226 788.9 982 46.5
Hma1.2p1_0232F.1_g097640 Hydrangea macrophylla HOM05D006439 ORTHO05D008152 6.3e-222 775.0 970 46.2
Lalb_Chr01g0018261 Lupinus albus HOM05D006439 ORTHO05D008152 2.0e-220 770.0 981 46.3
TPR.G19544 Trifolium pratense HOM05D006439 ORTHO05D008152 1.1e-218 764.2 965 45.2
Lj1g0012097 Lotus japonicus HOM05D006439 ORTHO05D008152 1.2e-217 760.8 977 45.2
Manes.08G022900 Manihot esculenta HOM05D006439 ORTHO05D008152 1.2e-217 760.8 978 46.0
Phvul.001G188000 Phaseolus vulgaris HOM05D006439 ORTHO05D008152 1.4e-216 757.3 980 45.3
FAN02G3052 Fragaria x ananassa HOM05D006439 ORTHO05D008152 3.0e-216 756.1 1048 43.6
Gohir.D11G340900 Gossypium hirsutum HOM05D006439 ORTHO05D008152 5.2e-216 755.4 855 49.8
arahy.Tifrunner.gnm1.ann1.YQ8CLY Arachis hypogaea HOM05D006439 ORTHO05D008152 2.6e-215 753.1 994 44.7
FAN14G3294 Fragaria x ananassa HOM05D006439 ORTHO05D008152 9.7e-215 751.1 977 45.4
Duzib093G0471 Durio zibethinus HOM05D006439 ORTHO05D008152 1.3e-214 750.7 984 44.1
Psat3g034720 Pisum sativum HOM05D006439 ORTHO05D008152 1.3e-214 750.7 976 45.1
Glyma.03G192900 Glycine max HOM05D006439 ORTHO05D008152 6.3e-214 748.4 978 44.3
Medtr7g104170 Medicago truncatula HOM05D006439 ORTHO05D008152 1.6e-212 743.8 970 44.3
Sopen10g035010 Solanum pennellii HOM05D006439 ORTHO05D008152 2.7e-212 743.0 961 44.4
arahy.Tifrunner.gnm1.ann1.JQB9X3 Arachis hypogaea HOM05D006439 ORTHO05D008152 1.0e-211 741.1 1001 43.9
Solyc10g085600.2 Solanum lycopersicum HOM05D006439 ORTHO05D008152 2.7e-209 733.0 961 44.0
HanXRQChr09g0247281 Helianthus annuus HOM05D006439 ORTHO05D008152 1.2e-204 717.6 966 44.6
Migut.L01768 Erythranthe guttata HOM05D006439 ORTHO05D008152 2.7e-201 706.4 933 44.7
Haze_19565 Corylus avellana HOM05D006439 ORTHO05D008152 1.2e-199 701.0 997 42.9
Carub.0004s1817 Capsella rubella HOM05D006439 ORTHO05D008152 3.4e-199 699.5 470 76.6
ECA233G3232 Erigeron canadensis HOM05D006439 ORTHO05D008152 8.6e-195 684.9 936 42.6
Cc06_g05440 Coffea canephora HOM05D006439 ORTHO05D008152 2.5e-194 683.3 915 43.3
Lsat_1_v5_gn_6_69500 Lactuca sativa HOM05D006439 ORTHO05D008152 3.3e-194 682.9 952 43.5
RcHm_v2.0_Chr3g0472491 Rosa chinensis HOM05D006439 ORTHO05D008152 5.6e-194 682.2 765 49.8
Peaxi162Scf00146g00718 Petunia axillaris HOM05D006439 ORTHO05D008152 9.2e-189 664.8 917 42.2
Nn2g14057 Nelumbo nucifera HOM05D006439 ORTHO05D008152 2.0e-188 663.7 977 42.0
Sc07g0005420 Simmondsia chinensis HOM05D006439 ORTHO05D008152 6.2e-185 652.1 864 44.4
Thecc.05G084500 Theobroma cacao HOM05D006439 ORTHO05D008152 1.1e-181 641.3 657 53.6
SGA_v2.0_scaffold184G39949 Striga asiatica HOM05D006439 ORTHO05D008152 1.9e-178 630.6 1046 39.1
Oeu034357.1 Olea europaea HOM05D006439 ORTHO05D008152 8.9e-176 621.7 1005 39.5
Cpa.g.sc5.59 Carica papaya HOM05D006439 ORTHO05D008152 1.1e-173 614.8 945 42.1
Ca_08981_v3 Cicer arietinum L. HOM05D006439 ORTHO05D008152 6.0e-172 609.0 776 46.1
PGR142G3529 Punica granatum HOM05D006439 ORTHO05D008152 1.3e-171 607.8 776 45.4
PSO384G3820 Papaver somniferum HOM05D006439 ORTHO05D008152 2.3e-171 607.1 965 39.6
EL10Ac7g16960 Beta vulgaris HOM05D006439 ORTHO05D008152 1.1e-170 604.7 900 41.4
Actinidia31281 Actinidia chinensis HOM05D006439 ORTHO05D008152 1.6e-169 600.9 830 42.9
SalBow5G0766 Salvia bowleyana HOM05D006439 ORTHO05D008152 6.6e-163 578.9 772 43.4
CAN.G1099.9 Capsicum annuum HOM05D006439 ORTHO05D008152 5.6e-162 575.9 758 44.7
AUR62028585 Chenopodium quinoa HOM05D006439 ORTHO05D008152 1.6e-161 574.3 877 39.7
VMungo1383G0775 Vigna mungo HOM05D006439 ORTHO05D008152 2.8e-161 573.5 678 49.3
FvH4_6g18170 Fragaria vesca HOM05D006439 ORTHO05D008152 6.0e-156 555.8 973 37.2
Ciclev10011131m.g Citrus clementina HOM05D006439 ORTHO05D008152 1.1e-152 545.0 763 43.4
Nitab4.5_0000381g0240 Nicotiana tabacum HOM05D006439 ORTHO05D008152 1.4e-149 534.6 779 40.7
Ah.15g091040 Amaranthus hybridus HOM05D006439 ORTHO05D008152 3.1e-144 516.9 836 39.2
Aqoxy2G01352 Aquilegia oxysepala HOM05D006439 ORTHO05D008152 2.8e-137 493.8 658 43.3
vmacro08831 Vaccinium macrocarpon HOM05D006439 ORTHO05D008152 8.1e-137 492.3 632 45.3
Os01g0968600 Oryza sativa ssp. japonica HOM05D006439 ORTHO05D008152 1.3e-134 485.0 929 35.1
Atru.chr8.1601 Acer truncatum HOM05D006439 ORTHO05D008152 2.9e-134 483.8 483 54.2
HPP92_005462 Vanilla planifolia HOM05D006439 ORTHO05D008152 2.8e-129 467.2 943 34.5
Carub.0004s1816 Capsella rubella HOM05D006439 ORTHO05D008152 2.4e-120 437.6 415 59.5
DCAR_009146 Daucus carota HOM05D006439 ORTHO05D008152 2.0e-119 434.5 856 35.7
TAR623G1631 Trochodendron aralioides HOM05D006439 ORTHO05D008152 1.0e-118 432.2 506 49.2
PSO801G0048 Papaver somniferum HOM05D006439 ORTHO05D008152 9.7e-114 415.6 744 37.8
Dinv21235 Davidia involucrata HOM05D000103 ORTHO05D008152 9.1e-112 409.1 419 52.3
Rhsim04G0133900 Rhododendron simsii HOM05D006439 ORTHO05D008152 5.5e-101 373.2 339 56.0
Zm00001eb139990 Zea mays HOM05D006439 ORTHO05D008152 4.0e-99 367.1 614 39.4
Atru.chr8.1600 Acer truncatum HOM05D006439 ORTHO05D008152 8.5e-94 349.4 488 42.2
CSS0038647 Camellia sinensis var. sinensis HOM05D006439 ORTHO05D008152 2.1e-92 344.7 283 59.4
MBI17_g23163_MAGBIO Magnolia biondii HOM05D006439 ORTHO05D008152 5.0e-78 297.0 388 45.4
Pp3c16_1040 Physcomitrium patens HOM05D006439 ORTHO05D008152 9.2e-72 276.2 908 28.2
Dinv21234 Davidia involucrata HOM05D006439 ORTHO05D008152 2.8e-68 264.6 406 38.7
Lj3A1001T30 Lonicera japonica HOM05D006439 ORTHO05D008152 1.5e-66 258.8 254 55.1
QL11p044009 Quercus lobata HOM05D006439 ORTHO05D009270 1.7e-62 245.4 495 34.9
SMO238G0046 Selaginella moellendorffii HOM05D006439 ORTHO05D008152 1.3e-57 229.2 900 26.0
Nitab4.5_0005447g0020 Nicotiana tabacum HOM05D006439 ORTHO05D008152 1.4e-56 225.7 470 33.6
AagrBONN_evm.TU.Sc2ySwM_117.1948 Anthoceros agrestis HOM05D006439 ORTHO05D008152 9.2e-56 223.0 476 34.2
QL07p039868 Quercus lobata HOM05D006439 ORTHO05D008152 8.9e-51 206.5 196 55.6
Ciclev10013912m.g Citrus clementina HOM05D006439 ORTHO05D008152 2.9e-49 201.4 173 60.1
PGSC0003DMG402008399 Solanum tuberosum HOM05D006439 ORTHO05D008152 5.4e-48 197.2 172 57.6
Mapoly0116s0006 Marchantia polymorpha HOM05D006439 ORTHO05D008152 1.6e-47 195.7 905 23.5
Lj3A1001T29 Lonicera japonica HOM05D006439 ORTHO05D008152 1.3e-46 192.6 312 40.7
SEGI_26522 Sequoiadendron giganteum HOM05D006439 ORTHO05D000001 9.9e-42 176.4 224 43.3
VMungo1383G1144 Vigna mungo HOM05D006439 ORTHO05D008152 7.1e-32 143.7 241 37.3
AL4G34520 Arabidopsis lyrata HOM05D006439 ORTHO05D008152 3.0e-30 138.3 164 50.6
RcHm_v2.0_Chr3g0472501 Rosa chinensis HOM05D006439 ORTHO05D008152 4.3e-29 134.4 136 50.0
CAN.G1099.8 Capsicum annuum HOM05D006439 ORTHO05D008152 1.1e-27 129.8 129 49.6
Nitab4.5_0000381g0270 Nicotiana tabacum HOM05D006502 ORTHO05D007704 9.0e-27 126.7 124 53.2
Lj3A1001G26 Lonicera japonica HOM05D006439 ORTHO05D008152 3.8e-25 121.3 202 36.6
VMungo1127G2301 Vigna mungo HOM05D006439 ORTHO05D008152 6.4e-25 120.6 244 35.7
SEGI_37059 Sequoiadendron giganteum HOM05D006439 ORTHO05D008152 2.3e-22 112.1 138 44.2
SEGI_31112 Sequoiadendron giganteum HOM05D006439 ORTHO05D008152 3.0e-22 111.7 279 32.3
CSS0030357 Camellia sinensis var. sinensis HOM05D006439 ORTHO05D008152 3.3e-21 108.2 173 42.2
TAR623G0848 Trochodendron aralioides HOM05D006439 ORTHO05D008152 2.4e-19 102.1 89 51.7
Lj3A1001T31 Lonicera japonica HOM05D006439 ORTHO05D008152 1.5e-18 99.4 98 53.1
Thecc.10G111400 Theobroma cacao HOM05D006439 ORTHO05D008152 3.4e-18 98.2 76 59.2
AUR62028586 Chenopodium quinoa HOM05D006439 ORTHO05D008152 3.8e-17 94.7 96 51.0
Aqoxy2G01351 Aquilegia oxysepala HOM05D006439 ORTHO05D008152 1.4e-16 92.8 163 32.5
AL4G34560 Arabidopsis lyrata HOM05D006439 ORTHO05D008152 1.4e-16 92.8 112 48.2
FAN09G3024 Fragaria x ananassa HOM05D006439 ORTHO05D008152 3.5e-15 88.2 161 36.6
CSS0006664 Camellia sinensis var. sinensis HOM05D006439 ORTHO05D008152 4.6e-15 87.8 91 52.7
SEGI_02684 Sequoiadendron giganteum HOM05D006439 ORTHO05D008152 3.1e-11 75.1 103 38.8
AUR62033535 Chenopodium quinoa HOM05D006439 ORTHO05D008152 1.3e-09 69.7 55 61.8
ECA232G2349 Erigeron canadensis HOM05D006439 ORTHO05D008321 2.7e-07 62.0 64 48.4
BolC3t16010H Brassica oleracea HOM05D000530 ORTHO05D000621 3.6e-07 61.6 295 26.1
C03p37120 Brassica napus HOM05D000530 ORTHO05D000621 6.1e-07 60.8 301 25.9
Gohir.A01G230200 Gossypium hirsutum HOM05D002125 ORTHO05D002105 1.4e-06 59.7 89 39.3
CSS0045256 Camellia sinensis var. sinensis HOM05D006439 ORTHO05D008152 6.7e-06 57.4 53 58.5


User provided reference genes

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