Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG5G17730 Aethionema arabicum HOM05D003904 ORTHO05D004378 1.9e-75 285.8 151 100.0
Thhalv10021536m.g Eutrema salsugineum HOM05D003904 ORTHO05D004378 3.1e-57 225.3 149 81.9
Sp3g06110 Schrenkiella parvula HOM05D003904 ORTHO05D004378 1.7e-55 219.5 149 81.2
AT3G07170 Arabidopsis thaliana HOM05D003904 ORTHO05D004378 3.2e-54 215.3 149 81.2
AL3G18420 Arabidopsis lyrata HOM05D003904 ORTHO05D004378 2.7e-53 212.2 149 81.2
Carub.0003s0669 Capsella rubella HOM05D003904 ORTHO05D004378 2.3e-52 209.1 149 79.2
BolC5t34670H Brassica oleracea HOM05D003904 ORTHO05D004378 2.2e-47 192.6 153 75.2
CARHR081810 Cardamine hirsuta HOM05D003904 ORTHO05D004378 8.4e-47 190.7 150 76.0
THA.LOC104802662 Tarenaya hassleriana HOM05D003904 ORTHO05D004378 1.3e-44 183.3 149 68.5
THA.LOC104818966 Tarenaya hassleriana HOM05D003904 ORTHO05D004378 3.0e-44 182.2 149 70.5
C05p60200 Brassica napus HOM05D003904 ORTHO05D004378 1.1e-43 180.3 139 74.8
BcaC05g29749 Brassica carinata HOM05D003904 ORTHO05D004378 1.5e-43 179.9 133 75.9
BcaC05g29846 Brassica carinata HOM05D003904 ORTHO05D004378 8.2e-42 174.1 135 74.1
BraA05t22830Z Brassica rapa HOM05D003904 ORTHO05D004378 5.3e-41 171.4 141 73.8
C03p42720 Brassica napus HOM05D003904 ORTHO05D004378 5.9e-40 167.9 145 70.3
BolC3t16542H Brassica oleracea HOM05D003904 ORTHO05D004378 1.7e-39 166.4 145 69.7
THA.LOC104822497 Tarenaya hassleriana HOM05D003904 ORTHO05D004378 1.1e-38 163.7 154 64.9
Sp2g19090 Schrenkiella parvula HOM05D003904 ORTHO05D004378 1.2e-37 160.2 150 60.7
A03p35130 Brassica napus HOM05D003904 ORTHO05D004378 2.7e-37 159.1 145 67.6
BraA03t12693Z Brassica rapa HOM05D003904 ORTHO05D004378 4.6e-37 158.3 150 66.7
Thhalv10004989m.g Eutrema salsugineum HOM05D003904 ORTHO05D004378 3.9e-36 155.2 149 59.1
BcaC06g30768 Brassica carinata HOM05D003904 ORTHO05D004378 9.1e-33 144.1 150 57.3
BraA06t26812Z Brassica rapa HOM05D003904 ORTHO05D004378 2.6e-32 142.5 152 58.6
Thecc.01G222100 Theobroma cacao HOM05D003904 ORTHO05D004378 2.6e-32 142.5 151 57.6
C07p39350 Brassica napus HOM05D003904 ORTHO05D004378 4.5e-32 141.7 152 57.9
COL.COLO4_15645 Corchorus olitorius HOM05D003904 ORTHO05D004378 3.8e-31 138.7 150 56.7
CsaV3_7G026020 Cucumis sativus L. HOM05D003904 ORTHO05D004378 5.0e-31 138.3 150 56.0
Atru.chr6.1416 Acer truncatum HOM05D003904 ORTHO05D004378 8.5e-31 137.5 151 55.6
Duzib211G0008 Durio zibethinus HOM05D003904 ORTHO05D004378 1.1e-30 137.1 151 55.6
Gohir.A07G200400 Gossypium hirsutum HOM05D003904 ORTHO05D004378 1.4e-30 136.7 152 54.6
MELO3C021054.2 Cucumis melo HOM05D003904 ORTHO05D004378 9.4e-30 134.0 150 54.7
Gohir.A07G200150 Gossypium hirsutum HOM05D003904 ORTHO05D004378 1.2e-29 133.7 153 54.9
Duzib138G1906 Durio zibethinus HOM05D003904 ORTHO05D004378 2.1e-29 132.9 151 55.0
Prupe.8G200300 Prunus persica HOM05D003904 ORTHO05D004378 2.7e-29 132.5 151 53.0
Ciclev10022271m.g Citrus clementina HOM05D003904 ORTHO05D004378 3.6e-29 132.1 151 55.0
Duzib133G0063 Durio zibethinus HOM05D003904 ORTHO05D004378 3.6e-29 132.1 151 55.6
CANSAT01G1918 Cannabis sativa HOM05D003904 ORTHO05D004378 1.0e-28 130.6 149 52.3
CANSAT01G1788 Cannabis sativa HOM05D003904 ORTHO05D004378 1.4e-28 130.2 149 52.3
Gorai.001G233000 Gossypium raimondii HOM05D003904 ORTHO05D004378 1.8e-28 129.8 152 53.3
ClCG09G008850 Citrullus lanatus HOM05D003904 ORTHO05D004378 2.3e-28 129.4 139 54.7
Manes.12G046500 Manihot esculenta HOM05D003904 ORTHO05D004378 3.0e-28 129.0 151 53.0
Manes.13G047800 Manihot esculenta HOM05D003904 ORTHO05D004378 5.1e-28 128.3 152 53.3
A06p38980 Brassica napus HOM05D003904 ORTHO05D004378 6.7e-28 127.9 144 55.6
Gohir.D07G206700 Gossypium hirsutum HOM05D003904 ORTHO05D004378 6.7e-28 127.9 152 52.6
MD05G1172900 Malus domestica HOM05D003904 ORTHO05D004378 1.5e-27 126.7 149 53.0
Nn1g07928 Nelumbo nucifera HOM05D003904 ORTHO05D004378 5.7e-27 124.8 155 54.8
TWI18G1339 Tripterygium wilfordii HOM05D003904 ORTHO05D004378 5.7e-27 124.8 151 53.6
BolC7t44455H Brassica oleracea HOM05D003904 ORTHO05D004378 7.4e-27 124.4 133 57.1
AT5G48680 Arabidopsis thaliana HOM05D003904 ORTHO05D004378 3.7e-26 122.1 153 54.2
BcaC06g30767 Brassica carinata HOM05D002747 ORTHO05D003069 3.7e-26 122.1 114 60.5
Potri.002G244700 Populus trichocarpa HOM05D003904 ORTHO05D004378 3.7e-26 122.1 149 51.0
Gorai.001G232800 Gossypium raimondii HOM05D003904 ORTHO05D004378 4.8e-26 121.7 157 52.2
RcHm_v2.0_Chr6g0284331 Rosa chinensis HOM05D003904 ORTHO05D004378 4.8e-26 121.7 151 48.3
QL09p052136 Quercus lobata HOM05D003904 ORTHO05D004378 6.3e-26 121.3 150 49.3
QL09p053006 Quercus lobata HOM05D003904 ORTHO05D004378 6.3e-26 121.3 150 49.3
AL8G21740 Arabidopsis lyrata HOM05D003904 ORTHO05D004378 1.1e-25 120.6 153 53.6
Gohir.D07G206500 Gossypium hirsutum HOM05D003904 ORTHO05D004378 1.1e-25 120.6 157 51.6
Phvul.008G130000 Phaseolus vulgaris HOM05D003904 ORTHO05D004378 1.1e-25 120.6 146 54.1
PGR044G0663 Punica granatum HOM05D003904 ORTHO05D004378 1.1e-25 120.6 152 53.3
Nn3g20007 Nelumbo nucifera HOM05D003904 ORTHO05D004378 1.4e-25 120.2 155 52.3
Glyma.08G349900 Glycine max HOM05D003904 ORTHO05D004378 3.1e-25 119.0 151 51.0
Cfa002841 Carpinus fangiana HOM05D003904 ORTHO05D004378 4.1e-25 118.6 150 50.7
Carub.0008s0842 Capsella rubella HOM05D003904 ORTHO05D004378 5.3e-25 118.2 155 50.3
FAN27G1941 Fragaria x ananassa HOM05D003904 ORTHO05D004378 6.9e-25 117.9 127 52.0
Potri.014G190800 Populus trichocarpa HOM05D003904 ORTHO05D004378 1.5e-24 116.7 151 50.3
TWI36G1515 Tripterygium wilfordii HOM05D003904 ORTHO05D004378 1.5e-24 116.7 149 51.7
FAN15G2255 Fragaria x ananassa HOM05D003904 ORTHO05D004378 2.0e-24 116.3 127 51.2
TWI75G0190 Tripterygium wilfordii HOM05D003904 ORTHO05D004378 2.6e-24 115.9 150 52.0
FvH4_2g18710 Fragaria vesca HOM05D003904 ORTHO05D004378 3.4e-24 115.5 151 46.4
Lalb_Chr12g0209941 Lupinus albus HOM05D003904 ORTHO05D004378 5.9e-24 114.8 150 48.0
Sc17g0002200 Simmondsia chinensis HOM05D003904 ORTHO05D004378 5.9e-24 114.8 153 52.3
Glyma.03G064800 Glycine max HOM05D003904 ORTHO05D004378 7.7e-24 114.4 154 50.0
Glyma.16G100600 Glycine max HOM05D003904 ORTHO05D004378 1.0e-23 114.0 154 49.4
Sabra02G0186200 Salix brachista HOM05D003904 ORTHO05D004378 1.0e-23 114.0 149 49.7
Sed0012318 Sechium edule HOM05D003904 ORTHO05D004378 1.3e-23 113.6 150 48.7
Cpa.g.sc8.132 Carica papaya HOM05D003904 ORTHO05D004378 1.7e-23 113.2 110 60.9
Ca_23234_v3 Cicer arietinum L. HOM05D003904 ORTHO05D004378 1.7e-23 113.2 147 49.7
Dinv19185 Davidia involucrata HOM05D003904 ORTHO05D004378 1.7e-23 113.2 155 49.0
Sabra14G0142300 Salix brachista HOM05D003904 ORTHO05D004378 1.7e-23 113.2 135 53.3
CSS0026054 Camellia sinensis var. sinensis HOM05D003904 ORTHO05D004378 2.2e-23 112.8 154 49.4
Phvul.010G020800 Phaseolus vulgaris HOM05D003904 ORTHO05D004378 2.2e-23 112.8 151 45.7
Dinv12666 Davidia involucrata HOM05D003904 ORTHO05D004378 2.9e-23 112.5 155 47.7
CSS0000113 Camellia sinensis var. sinensis HOM05D003904 ORTHO05D004378 3.8e-23 112.1 156 48.7
Psat4g200440 Pisum sativum HOM05D003904 ORTHO05D004378 3.8e-23 112.1 153 47.7
Eucgr.K02144 Eucalyptus grandis HOM05D003904 ORTHO05D004378 5.0e-23 111.7 154 46.8
EL10Ac7g17872 Beta vulgaris HOM05D003904 ORTHO05D004378 6.5e-23 111.3 153 51.0
AUR62001117 Chenopodium quinoa HOM05D003904 ORTHO05D004378 6.5e-23 111.3 151 51.0
FAN24G3335 Fragaria x ananassa HOM05D003904 ORTHO05D004378 8.5e-23 110.9 127 49.6
CiPaw.03G146900 Carya illinoinensis HOM05D003904 ORTHO05D004378 1.4e-22 110.2 151 48.3
CSS0042014 Camellia sinensis var. sinensis HOM05D003904 ORTHO05D004378 1.9e-22 109.8 154 48.7
AUR62016559 Chenopodium quinoa HOM05D003904 ORTHO05D004378 1.9e-22 109.8 151 50.3
GSVIVG01038356001 Vitis vinifera HOM05D003904 ORTHO05D004378 1.9e-22 109.8 155 51.0
MD10G1161300 Malus domestica HOM05D003904 ORTHO05D004378 2.5e-22 109.4 126 54.0
Cc01_g16830 Coffea canephora HOM05D003904 ORTHO05D004378 3.2e-22 109.0 141 51.1
CiPaw.04G104300 Carya illinoinensis HOM05D003904 ORTHO05D004378 5.5e-22 108.2 151 51.0
arahy.Tifrunner.gnm1.ann1.P0KJIP Arachis hypogaea HOM05D003904 ORTHO05D004378 7.2e-22 107.8 153 48.4
TPR.G17124 Trifolium pratense HOM05D003904 ORTHO05D004378 7.2e-22 107.8 148 50.0
TAR636G3655 Trochodendron aralioides HOM05D003904 ORTHO05D004378 9.4e-22 107.5 156 50.6
Hund05569 Selenicereus undatus HOM05D003904 ORTHO05D004378 1.2e-21 107.1 152 50.0
Ah.08g214500 Amaranthus hybridus HOM05D003904 ORTHO05D004378 2.1e-21 106.3 154 48.7
Sc05g0002020 Simmondsia chinensis HOM05D003904 ORTHO05D004378 2.1e-21 106.3 160 46.9
TAR362G1128 Trochodendron aralioides HOM05D003904 ORTHO05D004378 2.1e-21 106.3 158 50.0
TAR369G0358 Trochodendron aralioides HOM05D003904 ORTHO05D004378 3.6e-21 105.5 156 50.6
Lalb_Chr07g0194271 Lupinus albus HOM05D003904 ORTHO05D004378 4.7e-21 105.1 153 46.4
Medtr8g012995 Medicago truncatula HOM05D003904 ORTHO05D004378 6.1e-21 104.8 151 48.3
Actinidia09474 Actinidia chinensis HOM05D003904 ORTHO05D004378 1.0e-20 104.0 153 47.1
Oeu037383.1 Olea europaea HOM05D003904 ORTHO05D004378 2.3e-20 102.8 155 45.2
Actinidia23715 Actinidia chinensis HOM05D003904 ORTHO05D004378 6.7e-20 101.3 155 45.2
MSTRG.18841 Avicennia marina HOM05D003904 ORTHO05D004378 1.5e-19 100.1 158 44.9
ECA248G3101 Erigeron canadensis HOM05D003904 ORTHO05D004378 2.0e-19 99.8 154 46.1
Lj3g0009581 Lotus japonicus HOM05D003904 ORTHO05D004378 2.0e-19 99.8 154 43.5
HanXRQChr01g0015241 Helianthus annuus HOM05D003904 ORTHO05D004378 3.3e-19 99.0 153 46.4
Actinidia31468 Actinidia chinensis HOM05D003904 ORTHO05D004378 5.7e-19 98.2 165 42.4
MSTRG.20964 Avicennia marina HOM05D003904 ORTHO05D004378 5.7e-19 98.2 158 44.9
Lj2C1127G11 Lonicera japonica HOM05D003904 ORTHO05D004378 7.4e-19 97.8 152 44.1
Oeu031826.2 Olea europaea HOM05D003904 ORTHO05D004378 1.7e-18 96.7 104 55.8
PGSC0003DMG400017482 Solanum tuberosum HOM05D003904 ORTHO05D004378 2.2e-18 96.3 157 43.9
Lsat_1_v5_gn_5_180640 Lactuca sativa HOM05D003904 ORTHO05D004378 8.2e-18 94.4 155 45.2
Aa31sc370G10 Aethionema arabicum HOM05D003904 ORTHO05D004378 1.4e-17 93.6 66 71.2
Sopen09g022790 Solanum pennellii HOM05D003904 ORTHO05D004378 1.8e-17 93.2 157 42.7
unitig_899.g15018 Utricularia gibba HOM05D003904 ORTHO05D004378 1.8e-17 93.2 150 41.3
Solyc09g059620.4 Solanum lycopersicum HOM05D003904 ORTHO05D004378 2.4e-17 92.8 157 42.7
PSO357G0115 Papaver somniferum HOM05D003904 ORTHO05D004378 1.2e-16 90.5 157 47.8
Peaxi162Scf00238g00213 Petunia axillaris HOM05D003904 ORTHO05D004378 1.2e-16 90.5 156 42.9
Nitab4.5_0000345g0040 Nicotiana tabacum HOM05D003904 ORTHO05D004378 1.6e-16 90.1 157 41.4
PSO170G6902 Papaver somniferum HOM05D003904 ORTHO05D004378 2.6e-16 89.4 157 47.1
Haze_24836 Corylus avellana HOM05D003904 ORTHO05D004378 4.5e-16 88.6 93 55.9
SGA_v2.0_scaffold3G01636 Striga asiatica HOM05D003904 ORTHO05D004378 4.5e-16 88.6 162 42.0
DCAR_004727 Daucus carota HOM05D003904 ORTHO05D004378 5.9e-16 88.2 159 43.4
Rhsim13G0046900 Rhododendron simsii HOM05D003904 ORTHO05D004378 7.7e-16 87.8 190 38.9
unitig_736.g22341 Utricularia gibba HOM05D003904 ORTHO05D004378 1.0e-15 87.4 158 41.1
Haze_24839 Corylus avellana HOM05D003904 ORTHO05D004378 1.7e-15 86.7 93 54.8
Migut.N00625 Erythranthe guttata HOM05D003904 ORTHO05D004378 5.0e-15 85.1 159 41.5
SGA_v2.0_scaffold6G03227 Striga asiatica HOM05D003904 ORTHO05D004378 1.5e-14 83.6 159 39.0
VMungo0331G0837 Vigna mungo HOM05D003904 ORTHO05D004378 1.5e-14 83.6 109 48.6
Nitab4.5_0002641g0160 Nicotiana tabacum HOM05D003904 ORTHO05D004378 1.9e-14 83.2 155 41.9
Os04g0378200 Oryza sativa ssp. japonica HOM05D003904 ORTHO05D004378 9.4e-14 80.9 159 40.3
SGA_v2.0_scaffold18G08327 Striga asiatica HOM05D003904 ORTHO05D004378 1.2e-13 80.5 160 39.4
Nitab4.5_0000045g0390 Nicotiana tabacum HOM05D003904 ORTHO05D004378 2.1e-13 79.7 151 39.1
SalBow6G0123 Salvia bowleyana HOM05D003904 ORTHO05D004378 3.6e-13 79.0 120 43.3
CDE05G2788 Ceratophyllum demersum HOM05D003904 ORTHO05D004378 6.1e-13 78.2 160 42.5
Zm00001eb085860 Zea mays HOM05D003904 ORTHO05D004378 6.1e-13 78.2 155 38.7
Nitab4.5_0002616g0050 Nicotiana tabacum HOM05D003904 ORTHO05D004378 8.0e-13 77.8 145 40.0
ATR0609G102 Amborella trichopoda HOM05D003904 ORTHO05D004378 1.8e-12 76.6 158 39.2
Aqoxy5G00012 Aquilegia oxysepala HOM05D003904 ORTHO05D004378 4.0e-12 75.5 170 40.0
Rhsim01G0254500 Rhododendron simsii HOM05D003904 ORTHO05D004378 5.2e-12 75.1 114 45.6
vmacro14743 Vaccinium macrocarpon HOM05D003904 ORTHO05D004378 8.8e-12 74.3 213 33.3
CDE05G3121 Ceratophyllum demersum HOM05D003904 ORTHO05D004378 2.6e-11 72.8 163 40.5
CARHR183220 Cardamine hirsuta HOM05D003904 ORTHO05D004378 3.3e-11 72.4 149 41.6
Zm00001eb420700 Zea mays HOM05D003904 ORTHO05D004378 8.2e-10 67.8 154 37.0
Oeu037381.1 Olea europaea HOM05D003904 ORTHO05D004378 1.2e-08 63.9 62 54.8
arahy.Tifrunner.gnm1.ann1.YG552F Arachis hypogaea HOM05D003904 ORTHO05D004378 5.9e-08 61.6 91 48.4
HPP92_021424 Vanilla planifolia HOM05D003904 ORTHO05D004378 3.8e-07 58.9 156 37.2
Sed0014618 Sechium edule HOM05D003904 ORTHO05D004378 1.5e-06 57.0 90 48.9
Hund18422 Selenicereus undatus HOM05D003904 ORTHO05D004378 1.9e-06 56.6 151 41.7
CSS0009711 Camellia sinensis var. sinensis HOM05D003904 ORTHO05D004378 4.2e-06 55.5 112 37.5


User provided reference genes

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