Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG5G15140 Aethionema arabicum HOM05D004252 ORTHO05D005101 0.0e+00 3253.0 1669 100.0
AT3G04740 Arabidopsis thaliana HOM05D004252 ORTHO05D005101 0.0e+00 2692.5 1730 82.1
Thhalv10019885m.g Eutrema salsugineum HOM05D004252 ORTHO05D005101 0.0e+00 2678.7 1732 82.0
AL3G14870 Arabidopsis lyrata HOM05D004252 ORTHO05D005101 0.0e+00 2670.6 1728 81.8
Sp3g03590 Schrenkiella parvula HOM05D004252 ORTHO05D005101 0.0e+00 2627.8 1733 80.7
Carub.0003s0391 Capsella rubella HOM05D004252 ORTHO05D005101 0.0e+00 2601.2 1720 80.1
C05p62540 Brassica napus HOM05D004252 ORTHO05D005101 0.0e+00 2466.8 1691 78.5
BolC5t34909H Brassica oleracea HOM05D004252 ORTHO05D005101 0.0e+00 2466.4 1691 78.5
A05p42820 Brassica napus HOM05D004252 ORTHO05D005101 0.0e+00 2455.6 1705 77.7
BraA05t22970Z Brassica rapa HOM05D004252 ORTHO05D005101 0.0e+00 2441.8 1726 76.7
THA.LOC104818630 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 0.0e+00 2431.4 1743 75.0
THA.LOC104821672 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 0.0e+00 2402.9 1763 73.1
GSVIVG01021781001 Vitis vinifera HOM05D004252 ORTHO05D005101 0.0e+00 2195.6 1749 67.5
Manes.09G152800 Manihot esculenta HOM05D004252 ORTHO05D005101 0.0e+00 2159.8 1830 64.5
Haze_04358 Corylus avellana HOM05D004252 ORTHO05D005101 0.0e+00 2159.0 1872 63.5
Cfa006427 Carpinus fangiana HOM05D004252 ORTHO05D005101 0.0e+00 2154.8 1841 64.1
Ciclev10000014m.g Citrus clementina HOM05D004252 ORTHO05D005101 0.0e+00 2146.3 1827 64.6
Thecc.05G283200 Theobroma cacao HOM05D004252 ORTHO05D005101 0.0e+00 2138.2 1820 65.2
COL.COLO4_15351 Corchorus olitorius HOM05D004252 ORTHO05D005101 0.0e+00 2137.5 1811 64.9
CiPaw.08G123300 Carya illinoinensis HOM05D004252 ORTHO05D005101 0.0e+00 2135.9 1846 63.7
Sabra05G0047100 Salix brachista HOM05D004252 ORTHO05D005101 0.0e+00 2125.1 1825 63.9
CANSAT54G1217 Cannabis sativa HOM05D004252 ORTHO05D005101 0.0e+00 2124.0 1815 64.4
Potri.005G053700 Populus trichocarpa HOM05D004252 ORTHO05D005101 0.0e+00 2124.0 1823 63.7
Sabra13G0038000 Salix brachista HOM05D004252 ORTHO05D005101 0.0e+00 2123.6 1861 63.1
Nn3g19509 Nelumbo nucifera HOM05D004252 ORTHO05D005101 0.0e+00 2122.4 1844 63.1
Dinv20302 Davidia involucrata HOM05D004252 ORTHO05D005101 0.0e+00 2122.1 1816 63.8
Duzib128G1785 Durio zibethinus HOM05D004252 ORTHO05D005101 0.0e+00 2121.7 1822 63.9
Potri.013G041201 Populus trichocarpa HOM05D004252 ORTHO05D005101 0.0e+00 2120.9 1823 63.8
CSS0026350 Camellia sinensis var. sinensis HOM05D004252 ORTHO05D005101 0.0e+00 2119.4 1808 64.2
QL03p026982 Quercus lobata HOM05D004252 ORTHO05D005101 0.0e+00 2109.0 1851 63.0
Gorai.004G246800 Gossypium raimondii HOM05D004252 ORTHO05D005101 0.0e+00 2105.9 1816 64.3
Gohir.D08G232300 Gossypium hirsutum HOM05D004252 ORTHO05D005101 0.0e+00 2101.2 1815 64.0
MD04G1224900 Malus domestica HOM05D004252 ORTHO05D005101 0.0e+00 2092.4 1817 62.8
Duzib177G1152 Durio zibethinus HOM05D004252 ORTHO05D005101 0.0e+00 2087.0 1812 63.2
MD12G1241600 Malus domestica HOM05D004252 ORTHO05D005101 0.0e+00 2084.7 1814 63.3
TAR362G1238 Trochodendron aralioides HOM05D004252 ORTHO05D005101 0.0e+00 2079.3 1838 62.3
Prupe.6G343600 Prunus persica HOM05D004252 ORTHO05D005101 0.0e+00 2078.9 1828 63.0
TWI12G0933 Tripterygium wilfordii HOM05D004252 ORTHO05D005101 0.0e+00 2078.9 1841 62.6
Lj1A1079G39 Lonicera japonica HOM05D004252 ORTHO05D005101 0.0e+00 2077.4 1832 62.6
arahy.Tifrunner.gnm1.ann1.39XKQR Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 2076.6 1810 62.4
arahy.Tifrunner.gnm1.ann1.9CBY7M Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 2072.0 1820 62.1
Glyma.19G245100 Glycine max HOM05D004252 ORTHO05D005101 0.0e+00 2069.7 1809 61.1
RcHm_v2.0_Chr3g0451091 Rosa chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2063.9 1822 62.6
Solyc01g097320.3 Solanum lycopersicum HOM05D004252 ORTHO05D005101 0.0e+00 2061.2 1798 62.8
Actinidia32806 Actinidia chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2056.2 1698 66.1
VMungo0540G0159 Vigna mungo HOM05D004252 ORTHO05D005101 0.0e+00 2054.3 1817 61.1
CsaV3_2G004140 Cucumis sativus L. HOM05D004252 ORTHO05D005101 0.0e+00 2053.9 1826 62.1
Peaxi162Scf00282g00418 Petunia axillaris HOM05D004252 ORTHO05D005101 0.0e+00 2049.2 1802 62.4
Medtr7g115190 Medicago truncatula HOM05D004252 ORTHO05D005101 0.0e+00 2046.9 1784 62.1
Phvul.006G101900 Phaseolus vulgaris HOM05D004252 ORTHO05D005101 0.0e+00 2044.2 1821 60.8
TAR633G0655 Trochodendron aralioides HOM05D004252 ORTHO05D005101 0.0e+00 2041.9 1838 61.1
Lj1g0020341 Lotus japonicus HOM05D004252 ORTHO05D005101 0.0e+00 2040.8 1822 61.4
FvH4_6g02880 Fragaria vesca HOM05D004252 ORTHO05D005101 0.0e+00 2040.0 1840 62.0
Glyma.03G247300 Glycine max HOM05D004252 ORTHO05D005101 0.0e+00 2037.3 1817 60.4
Sc20g0000330 Simmondsia chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2036.5 1796 62.0
Sed0025221 Sechium edule HOM05D004252 ORTHO05D005101 0.0e+00 2031.9 1820 61.2
Rhsim04G0066800 Rhododendron simsii HOM05D004252 ORTHO05D005101 0.0e+00 2031.5 1832 61.6
Eucgr.B02119 Eucalyptus grandis HOM05D004252 ORTHO05D005101 0.0e+00 2025.8 1741 64.0
MELO3C004380.2 Cucumis melo HOM05D004252 ORTHO05D005101 0.0e+00 2025.4 1889 60.1
FAN02G2888 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2023.1 1847 61.8
Sed0020402 Sechium edule HOM05D004252 ORTHO05D005101 0.0e+00 2018.0 1830 60.8
PSO210G6431 Papaver somniferum HOM05D004252 ORTHO05D005101 0.0e+00 2016.9 1837 60.9
FAN09G2874 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2015.4 1845 61.4
vmacro20358 Vaccinium macrocarpon HOM05D004252 ORTHO05D005101 0.0e+00 2014.2 1895 59.9
PSO832G2970 Papaver somniferum HOM05D004252 ORTHO05D005101 0.0e+00 2013.0 1840 60.6
FAN05G2119 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2009.6 1844 61.6
Cc02_g30700 Coffea canephora HOM05D004252 ORTHO05D005101 0.0e+00 2009.2 1800 61.1
Lalb_Chr04g0262241 Lupinus albus HOM05D004252 ORTHO05D005101 0.0e+00 2006.1 1821 59.4
Psat3g007080 Pisum sativum HOM05D004252 ORTHO05D005101 0.0e+00 2006.1 1810 60.6
PGR142G2894 Punica granatum HOM05D004252 ORTHO05D005101 0.0e+00 2001.1 1823 60.9
ClCG02G016630 Citrullus lanatus HOM05D004252 ORTHO05D005101 0.0e+00 1996.9 1820 61.2
DCAR_023243 Daucus carota HOM05D004252 ORTHO05D005101 0.0e+00 1983.0 1814 60.3
ECA240G2739 Erigeron canadensis HOM05D004252 ORTHO05D005101 0.0e+00 1981.8 1744 61.7
Hund06974 Selenicereus undatus HOM05D004252 ORTHO05D005101 0.0e+00 1973.7 1825 61.0
Ca_09423_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 0.0e+00 1973.4 1820 59.9
Ca_29790_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 0.0e+00 1973.4 1820 59.9
AUR62004951 Chenopodium quinoa HOM05D004252 ORTHO05D005101 0.0e+00 1969.9 1801 61.5
Aqoxy5G01125 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 0.0e+00 1966.0 1807 59.9
EL10Ac4g09148 Beta vulgaris HOM05D004252 ORTHO05D005101 0.0e+00 1964.1 1792 61.2
DCAR_014751 Daucus carota HOM05D004252 ORTHO05D005101 0.0e+00 1951.8 1815 60.1
Medtr1g087060 Medicago truncatula HOM05D004252 ORTHO05D005101 0.0e+00 1949.9 1766 60.3
HanXRQChr03g0080781 Helianthus annuus HOM05D004252 ORTHO05D005101 0.0e+00 1947.9 1719 61.4
HanXRQChr13g0411361 Helianthus annuus HOM05D004252 ORTHO05D005101 0.0e+00 1946.0 1734 60.4
BcaB04g19300 Brassica carinata HOM05D004252 ORTHO05D005101 0.0e+00 1944.9 1642 67.1
SalBow3G2512 Salvia bowleyana HOM05D004252 ORTHO05D005101 0.0e+00 1943.7 1802 60.0
TPR.G6924 Trifolium pratense HOM05D004252 ORTHO05D005101 0.0e+00 1936.0 1789 59.4
Migut.B01091 Erythranthe guttata HOM05D004252 ORTHO05D005101 0.0e+00 1932.1 1831 58.9
Aqoxy6G01279 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 0.0e+00 1911.0 1780 59.5
Sopen01g040990 Solanum pennellii HOM05D004252 ORTHO05D005101 0.0e+00 1907.5 1698 62.0
Lsat_1_v5_gn_5_53600 Lactuca sativa HOM05D004252 ORTHO05D005101 0.0e+00 1881.7 1708 61.4
unitig_699.g19676 Utricularia gibba HOM05D004252 ORTHO05D005101 0.0e+00 1823.5 1743 58.3
Nitab4.5_0001592g0060 Nicotiana tabacum HOM05D004252 ORTHO05D005101 0.0e+00 1807.7 1627 61.8
AUR62001006 Chenopodium quinoa HOM05D004252 ORTHO05D005101 0.0e+00 1770.4 1800 57.4
ATR0665G632 Amborella trichopoda HOM05D004252 ORTHO05D005101 0.0e+00 1732.6 1868 52.9
CDE06G0814 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 0.0e+00 1716.8 1817 53.8
Os09g0281900 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 0.0e+00 1694.1 1764 53.2
Zm00001eb097360 Zea mays HOM05D004252 ORTHO05D005101 0.0e+00 1673.7 1761 53.0
CARHR078990 Cardamine hirsuta HOM05D004252 ORTHO05D005101 0.0e+00 1610.1 1109 78.4
Oeu002657.3 Olea europaea HOM05D004252 ORTHO05D005101 0.0e+00 1537.3 1371 62.1
HPP92_026425 Vanilla planifolia HOM05D004252 ORTHO05D005101 0.0e+00 1505.3 1631 54.4
Gohir.A08G215700 Gossypium hirsutum HOM05D004252 ORTHO05D005101 0.0e+00 1479.9 1335 61.8
Nitab4.5_0008996g0010 Nicotiana tabacum HOM05D004252 ORTHO05D005101 0.0e+00 1472.2 1661 52.4
CiPaw.07G067400 Carya illinoinensis HOM05D004252 ORTHO05D005101 0.0e+00 1338.2 1505 53.3
Ah.06g192370 Amaranthus hybridus HOM05D004252 ORTHO05D005101 0.0e+00 1323.1 1311 57.7
CAN.G134.97 Capsicum annuum HOM05D004252 ORTHO05D005101 0.0e+00 1318.5 1213 59.5
arahy.Tifrunner.gnm1.ann1.YD0KDM Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1315.8 1334 55.9
arahy.Tifrunner.gnm1.ann1.QZ0BKE Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1301.6 1326 56.0
Mapoly0110s0011 Marchantia polymorpha HOM05D004252 ORTHO05D005101 0.0e+00 1256.5 1970 40.8
Dinv08153 Davidia involucrata HOM05D004252 ORTHO05D005101 0.0e+00 1230.7 1218 56.6
SMO118G0536 Selaginella moellendorffii HOM05D004252 ORTHO05D005101 0.0e+00 1206.0 1749 43.1
SGA_v2.0_scaffold172G38984 Striga asiatica HOM05D004252 ORTHO05D005101 0.0e+00 1151.0 1007 62.9
arahy.Tifrunner.gnm1.ann1.795G7S Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1129.8 1186 54.1
Pp3c9_5080 Physcomitrium patens HOM05D004252 ORTHO05D005101 0.0e+00 1117.1 1926 37.7
Pp3c9_4280 Physcomitrium patens HOM05D004252 ORTHO05D005101 0.0e+00 1103.6 1970 37.0
AagrBONN_evm.TU.Sc2ySwM_368.2529 Anthoceros agrestis HOM05D004252 ORTHO05D005101 0.0e+00 1095.9 1922 38.1
SEGI_19302 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 0.0e+00 1080.5 1374 48.2
CDE02G1705 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 3.6e-300 1035.8 1075 55.4
Oeu027473.1 Olea europaea HOM05D004252 ORTHO05D005101 4.7e-231 806.2 1239 43.9
FAN14G3887 Fragaria x ananassa HOM05D004252 ORTHO05D005101 1.5e-229 801.2 733 60.0
SHI18417 Sapria himalayana HOM05D004252 ORTHO05D005101 5.4e-227 792.7 1375 38.8
CDE02G2007 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 3.7e-204 716.8 606 60.6
Cpa.g.sc2756.2 Carica papaya HOM05D004252 ORTHO05D005101 3.0e-201 707.2 522 72.6
CAN.G134.96 Capsicum annuum HOM05D004252 ORTHO05D005101 2.8e-191 674.1 470 74.3
Ah.06g192380 Amaranthus hybridus HOM05D004252 ORTHO05D005101 2.5e-176 624.4 463 69.5
Aqoxy1G03371 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 4.8e-167 593.6 486 69.5
SHI18418 Sapria himalayana HOM05D004252 ORTHO05D005101 4.8e-167 593.6 617 53.6
Atru.chr2.822 Acer truncatum HOM05D004252 ORTHO05D005101 5.1e-161 573.5 385 78.2
arahy.Tifrunner.gnm1.ann1.8T8W7S Arachis hypogaea HOM05D004252 ORTHO05D005101 9.0e-158 562.8 596 53.7
Cpa.g.c42029 Carica papaya HOM05D004252 ORTHO05D005101 2.0e-157 561.6 349 78.8
Os08g0332800 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 2.4e-150 538.1 422 61.6
Dinv08152 Davidia involucrata HOM05D004252 ORTHO05D005101 7.2e-147 526.6 337 79.8
Oeu027472.1 Olea europaea HOM05D004252 ORTHO05D005101 7.4e-144 516.5 354 72.6
Os08g0333000 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 2.2e-127 461.8 388 66.0
arahy.Tifrunner.gnm1.ann1.E2R4RP Arachis hypogaea HOM05D004252 ORTHO05D005101 8.2e-127 459.9 407 60.7
Oeu021056.1 Olea europaea HOM05D004252 ORTHO05D005101 1.9e-115 422.2 332 63.3
Cpa.g.sc2756.1 Carica papaya HOM05D004252 ORTHO05D005101 5.0e-108 397.5 267 81.3
Atru.chr2.823 Acer truncatum HOM05D004252 ORTHO05D005101 1.7e-103 382.5 254 79.1
Atru.chr2.824 Acer truncatum HOM05D004252 ORTHO05D005101 7.8e-93 347.1 283 65.0
arahy.Tifrunner.gnm1.ann1.82F4VT Arachis hypogaea HOM05D004252 ORTHO05D005101 1.7e-76 292.7 334 51.2
HanXRQChr01g0016721 Helianthus annuus HOM05D004252 ORTHO05D005101 2.6e-72 278.9 301 58.1
HanXRQChr13g0410791 Helianthus annuus HOM05D004252 ORTHO05D005101 4.4e-72 278.1 300 58.0
HanXRQChr10g0278361 Helianthus annuus HOM05D004252 ORTHO05D005101 4.9e-71 274.6 308 58.1
Cpa.g.sc2756.3 Carica papaya HOM05D004252 ORTHO05D005101 7.4e-59 234.2 330 45.2
Atru.chr2.826 Acer truncatum HOM05D004252 ORTHO05D005101 8.1e-50 204.1 123 80.5
Atru.chr2.825 Acer truncatum HOM05D004252 ORTHO05D005101 1.7e-39 169.9 128 65.6
Cpa.g.sc1346.1 Carica papaya HOM05D004252 ORTHO05D005101 1.7e-23 116.7 70 84.3
Sopen00g013550 Solanum pennellii HOM05D004252 ORTHO05D005101 6.1e-21 108.2 71 74.6
SEGI_18631 Sequoiadendron giganteum HOM05D000173 ORTHO05D006747 1.8e-20 106.7 90 61.1
PRCOL_00001722 Prasinoderma coloniale HOM05D000936 ORTHO05D005107 1.1e-19 104.0 592 22.8
CAN.G1116.5 Capsicum annuum HOM05D004252 ORTHO05D005101 9.7e-19 100.9 70 68.6
MCO11G870 Micromonas commoda HOM05D004252 ORTHO05D005101 4.2e-14 85.5 204 27.5
SEGI_17147 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 4.2e-14 85.5 66 65.2
SEGI_02854 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 7.2e-14 84.7 70 58.6
Psat3g129080 Pisum sativum HOM05D004252 ORTHO05D005101 6.1e-13 81.6 85 50.6
Psat3g129120 Pisum sativum HOM05D004252 ORTHO05D005101 8.0e-13 81.3 68 58.8
Gohir.D03G054650 Gossypium hirsutum HOM05D004252 ORTHO05D005101 1.8e-12 80.1 39 84.6
Gohir.D01G110850 Gossypium hirsutum HOM05D004252 ORTHO05D005101 2.3e-12 79.7 34 97.1
Gohir.D04G023525 Gossypium hirsutum HOM05D004252 ORTHO05D005101 2.3e-12 79.7 34 97.1
Gohir.D10G142750 Gossypium hirsutum HOM05D004252 ORTHO05D005101 2.3e-12 79.7 34 97.1
Gohir.D12G169250 Gossypium hirsutum HOM05D004252 ORTHO05D005101 2.3e-12 79.7 34 97.1
Gorai.004G036500 Gossypium raimondii HOM05D004252 ORTHO05D005101 2.3e-12 79.7 34 97.1
DCAR_027576 Daucus carota HOM05D004252 ORTHO05D005101 1.5e-11 77.0 95 50.5
Pp3c15_3250 Physcomitrium patens HOM05D004252 ORTHO05D005101 2.9e-07 62.8 187 30.5


User provided reference genes

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