Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG5G12180 Aethionema arabicum HOM05D005375 ORTHO05D006598 2.6e-229 798.5 442 100.0
AT4G26750 Arabidopsis thaliana HOM05D005375 ORTHO05D006598 5.9e-157 558.1 447 70.7
Carub.0007s1409 Capsella rubella HOM05D005375 ORTHO05D006598 1.1e-155 553.9 448 70.1
Sp7g24730 Schrenkiella parvula HOM05D005375 ORTHO05D006598 9.4e-155 550.8 447 70.2
AL7G26080 Arabidopsis lyrata HOM05D005375 ORTHO05D006598 2.1e-154 549.7 447 71.8
CARHR234370 Cardamine hirsuta HOM05D005375 ORTHO05D006598 3.9e-153 545.4 462 68.4
BolC1t02212H Brassica oleracea HOM05D005375 ORTHO05D006598 6.3e-151 538.1 451 69.4
A01p18000 Brassica napus HOM05D000504 ORTHO05D000403 1.1e-139 500.7 450 66.7
Thhalv10025139m.g Eutrema salsugineum HOM05D005375 ORTHO05D006598 1.1e-139 500.7 450 66.7
C01p22820 Brassica napus HOM05D000504 ORTHO05D006598 6.1e-138 495.0 450 66.0
BraA01t01755Z Brassica rapa HOM05D000504 ORTHO05D000403 2.3e-137 493.0 450 70.7
THA.LOC104811633 Tarenaya hassleriana HOM05D005375 ORTHO05D006598 4.7e-122 442.2 444 60.1
Manes.03G136300 Manihot esculenta HOM05D005375 ORTHO05D006598 6.6e-116 421.8 454 59.9
ClCG10G005050 Citrullus lanatus HOM05D005375 ORTHO05D006598 4.9e-111 405.6 484 51.0
TWI38G0072 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 1.4e-110 404.1 455 57.8
Rhsim06G0223700 Rhododendron simsii HOM05D005375 ORTHO05D006598 2.4e-110 403.3 448 55.4
AUR62015884 Chenopodium quinoa HOM05D005375 ORTHO05D006598 3.5e-109 399.4 456 57.9
BcaC09g52262 Brassica carinata HOM05D005375 ORTHO05D006598 7.8e-109 398.3 381 64.0
AUR62020339 Chenopodium quinoa HOM05D005375 ORTHO05D006598 1.3e-108 397.5 452 58.0
Thecc.07G027900 Theobroma cacao HOM05D005375 ORTHO05D006598 1.3e-108 397.5 455 53.6
Cfa020276 Carpinus fangiana HOM05D005375 ORTHO05D006598 3.9e-108 396.0 462 56.3
MD03G1294800 Malus domestica HOM05D005375 ORTHO05D006598 5.1e-108 395.6 454 58.8
PGSC0003DMG400022298 Solanum tuberosum HOM05D005375 ORTHO05D006598 1.5e-107 394.0 442 59.3
CsaV3_3G004730 Cucumis sativus L. HOM05D005375 ORTHO05D006598 9.5e-107 391.3 453 52.3
CSS0021148 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 2.1e-106 390.2 452 55.3
Ciclev10008309m.g Citrus clementina HOM05D005375 ORTHO05D006598 2.1e-106 390.2 455 54.1
Gohir.A04G011700 Gossypium hirsutum HOM05D005375 ORTHO05D006598 4.7e-106 389.0 466 51.9
CSS0031566 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 2.3e-105 386.7 456 56.1
Potri.011G082000 Populus trichocarpa HOM05D005375 ORTHO05D006598 3.1e-105 386.3 459 56.9
SGA_v2.0_scaffold8G04388 Striga asiatica HOM05D005375 ORTHO05D006598 3.1e-105 386.3 444 54.5
Duzib170G0122 Durio zibethinus HOM05D005375 ORTHO05D006598 4.0e-105 386.0 451 58.8
Sabra11G0065600 Salix brachista HOM05D005375 ORTHO05D006598 4.0e-105 386.0 493 55.4
EL10Ac4g07689 Beta vulgaris HOM05D005375 ORTHO05D006598 5.2e-105 385.6 465 57.4
CAN.G337.55 Capsicum annuum HOM05D005375 ORTHO05D006598 1.2e-104 384.4 460 57.6
Nitab4.5_0001160g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 1.2e-104 384.4 460 57.8
Gohir.D05G374900 Gossypium hirsutum HOM05D005375 ORTHO05D006598 2.6e-104 383.3 466 51.3
Gorai.009G443800 Gossypium raimondii HOM05D005375 ORTHO05D006598 4.4e-104 382.5 465 51.0
Nitab4.5_0004445g0070 Nicotiana tabacum HOM05D005375 ORTHO05D006598 9.9e-104 381.3 461 53.4
MD00G1179000 Malus domestica HOM05D005375 ORTHO05D006598 2.9e-103 379.8 453 57.4
vmacro22307 Vaccinium macrocarpon HOM05D005375 ORTHO05D006598 1.4e-102 377.5 502 50.6
ECA240G0086 Erigeron canadensis HOM05D005375 ORTHO05D006598 5.4e-102 375.6 446 58.7
Prupe.8G266900 Prunus persica HOM05D005375 ORTHO05D006598 7.1e-102 375.2 457 58.4
TAR627G0180 Trochodendron aralioides HOM05D005375 ORTHO05D006598 9.2e-102 374.8 451 56.8
Dinv22229 Davidia involucrata HOM05D005375 ORTHO05D006598 6.0e-101 372.1 445 58.4
MSTRG.6961 Avicennia marina HOM05D005375 ORTHO05D006598 7.8e-101 371.7 448 53.6
Nitab4.5_0005078g0020 Nicotiana tabacum HOM05D005375 ORTHO05D006598 7.8e-101 371.7 455 54.1
Psat2g009920 Pisum sativum HOM05D005375 ORTHO05D006598 1.1e-99 367.9 516 49.2
Atru.chr2.3553 Acer truncatum HOM05D005375 ORTHO05D006598 2.5e-99 366.7 449 51.2
Aqoxy1G04123 Aquilegia oxysepala HOM05D005375 ORTHO05D006598 2.5e-99 366.7 453 54.3
Atru.chr2.3534 Acer truncatum HOM05D005375 ORTHO05D006598 3.3e-99 366.3 457 51.6
HanXRQChr13g0408271 Helianthus annuus HOM05D005375 ORTHO05D006598 3.3e-99 366.3 450 57.1
HanXRQChr03g0076881 Helianthus annuus HOM05D005375 ORTHO05D006598 5.6e-99 365.5 444 58.1
MELO3C014172.2 Cucumis melo HOM05D005375 ORTHO05D006598 7.3e-99 365.2 456 50.0
Glyma.14G018200 Glycine max HOM05D005375 ORTHO05D006598 2.1e-98 363.6 500 49.0
LjContig00272g0009776 Lotus japonicus HOM05D005375 ORTHO05D006598 2.1e-98 363.6 489 52.4
Nitab4.5_0007749g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 2.8e-98 363.2 457 56.0
Glyma.02G295200 Glycine max HOM05D005375 ORTHO05D006598 4.7e-98 362.5 481 54.9
Cc05_g14340 Coffea canephora HOM05D005375 ORTHO05D006598 6.2e-98 362.1 467 51.6
Solyc07g064980.3 Solanum lycopersicum HOM05D005375 ORTHO05D006598 1.1e-97 361.3 445 57.8
TAR629G0374 Trochodendron aralioides HOM05D005375 ORTHO05D006598 1.1e-97 361.3 445 53.9
FAN04G2161 Fragaria x ananassa HOM05D005375 ORTHO05D006598 1.4e-97 360.9 501 51.1
FAN13G1970 Fragaria x ananassa HOM05D005375 ORTHO05D006598 4.0e-97 359.4 496 53.4
FvH4_5g39180 Fragaria vesca HOM05D005375 ORTHO05D006598 5.2e-97 359.0 497 51.7
QL08p007584 Quercus lobata HOM05D005375 ORTHO05D006598 5.2e-97 359.0 454 55.7
RcHm_v2.0_Chr7g0241441 Rosa chinensis HOM05D005375 ORTHO05D006598 5.2e-97 359.0 500 52.0
CSS0047507 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 6.8e-97 358.6 447 51.5
Phvul.008G272700 Phaseolus vulgaris HOM05D005375 ORTHO05D006598 1.2e-96 357.8 497 51.3
unitig_747.g21591 Utricularia gibba HOM05D005375 ORTHO05D006598 2.6e-96 356.7 447 54.6
MSTRG.12999 Avicennia marina HOM05D005375 ORTHO05D006598 9.9e-96 354.8 458 52.4
FAN18G4382 Fragaria x ananassa HOM05D005375 ORTHO05D006598 9.9e-96 354.8 509 49.9
Sopen07g033190 Solanum pennellii HOM05D005375 ORTHO05D006598 1.3e-95 354.4 445 58.7
Ca_06349_v3 Cicer arietinum L. HOM05D005375 ORTHO05D006598 4.9e-95 352.4 442 50.0
Migut.M01705 Erythranthe guttata HOM05D005375 ORTHO05D006598 1.9e-94 350.5 464 54.5
PSO210G0227 Papaver somniferum HOM05D005375 ORTHO05D006598 1.9e-94 350.5 460 52.8
Duzib268G0742 Durio zibethinus HOM05D005375 ORTHO05D006598 5.4e-94 349.0 454 55.1
PSO302G0025 Papaver somniferum HOM05D005375 ORTHO05D006598 1.6e-93 347.4 462 52.4
TPR.G35360 Trifolium pratense HOM05D005375 ORTHO05D006598 1.6e-93 347.4 518 46.1
VMungo0647G1984 Vigna mungo HOM05D005375 ORTHO05D006598 4.6e-93 345.9 517 47.8
FAN08G1518 Fragaria x ananassa HOM05D005375 ORTHO05D006598 3.0e-92 343.2 486 51.6
Dinv40796 Davidia involucrata HOM05D005375 ORTHO05D006598 3.9e-92 342.8 480 49.4
Lj6g0028194 Lotus japonicus HOM05D005375 ORTHO05D006598 5.1e-92 342.4 483 51.8
DCAR_022591 Daucus carota HOM05D005375 ORTHO05D006598 8.7e-92 341.7 463 50.5
CiPaw.11G194800 Carya illinoinensis HOM05D005375 ORTHO05D006598 1.3e-90 337.8 451 48.3
Eucgr.F03508 Eucalyptus grandis HOM05D005375 ORTHO05D006598 6.2e-90 335.5 482 51.7
Migut.H01791 Erythranthe guttata HOM05D005375 ORTHO05D006598 4.4e-88 329.3 445 48.1
Peaxi162Scf00235g00721 Petunia axillaris HOM05D005375 ORTHO05D006598 3.8e-87 326.2 456 55.0
Gorai.002G093900 Gossypium raimondii HOM05D005375 ORTHO05D006598 3.2e-86 323.2 453 52.3
Hma1.2p1_1332F.1_g276150 Hydrangea macrophylla HOM05D005375 ORTHO05D006598 3.2e-86 323.2 442 53.6
COL.COLO4_09738 Corchorus olitorius HOM05D005375 ORTHO05D006598 7.1e-86 322.0 422 55.5
Gohir.A01G084800 Gossypium hirsutum HOM05D005375 ORTHO05D006598 7.1e-86 322.0 450 51.8
Os06g0308800 Oryza sativa ssp. japonica HOM05D005375 ORTHO05D006598 1.2e-85 321.2 491 49.3
Gohir.D01G071200 Gossypium hirsutum HOM05D005375 ORTHO05D006598 2.1e-85 320.5 449 52.1
PGR031G3708 Punica granatum HOM05D005375 ORTHO05D006598 7.9e-85 318.5 437 53.3
Lsat_1_v5_gn_9_90720 Lactuca sativa HOM05D005375 ORTHO05D006598 5.1e-84 315.8 450 54.7
CANSAT11G2127 Cannabis sativa HOM05D005375 ORTHO05D006598 1.1e-81 308.1 455 50.5
ATR1101G026 Amborella trichopoda HOM05D005375 ORTHO05D006598 9.0e-81 305.1 461 45.8
Sed0014032 Sechium edule HOM05D005375 ORTHO05D006598 2.6e-80 303.5 419 49.9
Lj1C881T5 Lonicera japonica HOM05D005375 ORTHO05D006598 9.9e-80 301.6 417 48.9
SEGI_32868 Sequoiadendron giganteum HOM05D005375 ORTHO05D006598 4.9e-79 299.3 491 44.8
CDE07G0643 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 7.1e-78 295.4 467 43.7
Medtr5g093880 Medicago truncatula HOM05D005375 ORTHO05D006598 4.6e-77 292.7 501 46.1
CDE04G3304 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 3.9e-76 289.7 447 43.0
Actinidia05060 Actinidia chinensis HOM05D005375 ORTHO05D006598 2.5e-75 287.0 426 49.1
Cpa.g.sc284.2 Carica papaya HOM05D005375 ORTHO05D006598 7.4e-75 285.4 169 82.2
GSVIVG01037729001 Vitis vinifera HOM05D005375 ORTHO05D006598 2.1e-74 283.9 201 72.1
Lalb_Chr04g0248131 Lupinus albus HOM05D005375 ORTHO05D006598 1.4e-73 281.2 511 48.3
Pp3c12_1420 Physcomitrium patens HOM05D005375 ORTHO05D006598 1.5e-72 277.7 476 45.2
Oeu054311.1 Olea europaea HOM05D005375 ORTHO05D006598 5.8e-72 275.8 465 45.8
Zm00001eb281230 Zea mays HOM05D005375 ORTHO05D006598 5.8e-72 275.8 458 45.0
Nn1g07350 Nelumbo nucifera HOM05D005375 ORTHO05D006598 1.0e-71 275.0 463 45.1
Mapoly0043s0080 Marchantia polymorpha HOM05D005375 ORTHO05D006598 2.9e-71 273.5 515 40.6
Lalb_Chr00c48g0412951 Lupinus albus HOM05D005375 ORTHO05D006598 1.2e-69 268.1 183 74.9
SMO271G0101 Selaginella moellendorffii HOM05D005375 ORTHO05D006598 1.5e-67 261.2 459 44.7
TAR624G1027 Trochodendron aralioides HOM05D005375 ORTHO05D006598 7.4e-67 258.8 187 70.6
HPP92_015778 Vanilla planifolia HOM05D005375 ORTHO05D006598 1.6e-66 257.7 243 59.3
Lj8A173T72 Lonicera japonica HOM05D005375 ORTHO05D006598 8.4e-63 245.4 432 40.5
CSS0025851 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 1.8e-60 237.7 410 40.7
DCAR_016648 Daucus carota HOM05D005375 ORTHO05D006598 1.4e-57 228.0 421 46.3
PGR031G2801 Punica granatum HOM05D005375 ORTHO05D006598 4.5e-56 223.0 378 44.4
TWI39G0687 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 1.1e-54 218.4 128 81.2
Haze_09747 Corylus avellana HOM05D005375 ORTHO05D006598 4.2e-54 216.5 468 42.3
Sc16g0005720 Simmondsia chinensis HOM05D005375 ORTHO05D006598 9.1e-49 198.7 345 47.2
AagrBONN_evm.TU.Sc2ySwM_368.1760 Anthoceros agrestis HOM05D005375 ORTHO05D006598 1.2e-48 198.4 402 39.8
Lalb_Chr00c48g0413001 Lupinus albus HOM05D005375 ORTHO05D006598 7.4e-43 179.1 172 58.7
SHI26566 Sapria himalayana HOM05D005375 ORTHO05D006598 1.8e-41 174.5 492 33.7
Actinidia32285 Actinidia chinensis HOM05D005375 ORTHO05D006598 7.2e-38 162.5 257 44.7
Cre03.g145227 Chlamydomonas reinhardtii HOM05D005375 ORTHO05D006598 5.2e-36 156.4 175 48.6
PRCOL_00004002 Prasinoderma coloniale HOM05D005375 ORTHO05D006598 4.4e-35 153.3 164 49.4
CBR_g50394 Chara braunii HOM05D005375 ORTHO05D006598 9.1e-33 145.6 423 35.7
MCO03G124 Micromonas commoda HOM05D005375 ORTHO05D006598 5.7e-27 126.3 217 36.9
Ah.06g182230 Amaranthus hybridus HOM05D005375 ORTHO05D006598 3.8e-23 113.6 65 86.2
Nn1g03334 Nelumbo nucifera HOM05D005375 ORTHO05D006598 7.2e-22 109.4 420 30.2
C08p09960 Brassica napus HOM05D000504 ORTHO05D000403 6.1e-21 106.3 412 31.8
BolC8t48673H Brassica oleracea HOM05D000504 ORTHO05D000403 6.1e-21 106.3 412 31.8
Zm00001eb381490 Zea mays HOM05D005375 ORTHO05D006598 1.4e-20 105.1 165 46.7
Actinidia37374 Actinidia chinensis HOM05D005375 ORTHO05D006598 5.2e-20 103.2 79 69.6
Hund23196 Selenicereus undatus HOM05D005375 ORTHO05D006598 7.5e-19 99.4 97 56.7
BcaC07g38248 Brassica carinata HOM05D005375 ORTHO05D006598 1.4e-17 95.1 158 48.1
Actinidia20957 Actinidia chinensis HOM05D005375 ORTHO05D006598 1.1e-14 85.5 119 45.4
MCO09G798 Micromonas commoda HOM05D005375 ORTHO05D006598 1.4e-12 78.6 229 33.6
CAN.G396.4 Capsicum annuum HOM05D005375 ORTHO05D006598 2.0e-11 74.7 117 40.2
CAN.G4023.1 Capsicum annuum HOM05D005375 ORTHO05D006598 2.0e-11 74.7 117 40.2
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 1.4e-09 68.6 49 65.3
CAN.G396.14 Capsicum annuum HOM05D005375 ORTHO05D006598 5.4e-09 66.6 65 56.9
TAR624G1433 Trochodendron aralioides HOM05D005375 ORTHO05D006598 2.7e-08 64.3 121 38.8
ECA238G0891 Erigeron canadensis HOM05D000230 ORTHO05D000176 3.3e-06 57.4 140 25.0
Sp5g03890 Schrenkiella parvula HOM05D000230 ORTHO05D000176 4.3e-06 57.0 128 23.4
Aa31LG10G13570 Aethionema arabicum HOM05D000230 ORTHO05D000176 5.6e-06 56.6 128 23.4
AT3G59100 Arabidopsis thaliana HOM05D000230 ORTHO05D000176 5.6e-06 56.6 128 23.4
BcaC08g44958 Brassica carinata HOM05D000230 ORTHO05D000176 5.6e-06 56.6 128 23.4
C06p25880 Brassica napus HOM05D000230 ORTHO05D000176 5.6e-06 56.6 128 23.4
BolC6t37750H Brassica oleracea HOM05D000230 ORTHO05D000176 5.6e-06 56.6 128 23.4
Carub.0005s2586 Capsella rubella HOM05D000230 ORTHO05D000176 5.6e-06 56.6 128 23.4
Thhalv10005734m.g Eutrema salsugineum HOM05D000230 ORTHO05D000176 7.3e-06 56.2 128 23.4
Lsat_1_v5_gn_8_116700 Lactuca sativa HOM05D000230 ORTHO05D000176 7.3e-06 56.2 115 30.4
AL5G40990 Arabidopsis lyrata HOM05D000230 ORTHO05D000176 9.5e-06 55.8 128 23.4


User provided reference genes

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