Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG4G9600 Aethionema arabicum HOM05D006001 ORTHO05D006714 1.2e-186 656.4 342 100.0
CARHR231890 Cardamine hirsuta HOM05D006001 ORTHO05D006714 3.7e-98 362.5 348 64.7
BcaC09g50862 Brassica carinata HOM05D006001 ORTHO05D006714 5.5e-94 348.6 355 60.8
Carub.0007s1657 Capsella rubella HOM05D006001 ORTHO05D006714 3.6e-93 345.9 350 61.4
Sp7g22490 Schrenkiella parvula HOM05D006001 ORTHO05D006714 1.9e-91 340.1 350 59.4
C01p19810 Brassica napus HOM05D002298 ORTHO05D006714 3.7e-90 335.9 348 60.3
AT4G24500 Arabidopsis thaliana HOM05D006001 ORTHO05D006714 1.1e-89 334.3 350 60.3
A01p15870 Brassica napus HOM05D002298 ORTHO05D006714 1.1e-89 334.3 343 60.1
BolC1t01909H Brassica oleracea HOM05D002298 ORTHO05D006714 1.1e-89 334.3 348 60.1
BraA01t01521Z Brassica rapa HOM05D002298 ORTHO05D006714 1.2e-88 330.9 349 59.6
Thhalv10025760m.g Eutrema salsugineum HOM05D006001 ORTHO05D006714 5.9e-88 328.6 349 59.9
AL7G28720 Arabidopsis lyrata HOM05D006001 ORTHO05D006714 4.2e-86 322.4 342 59.4
A03p55330 Brassica napus HOM05D006001 ORTHO05D006714 4.2e-78 295.8 350 55.1
BolC7t45854H Brassica oleracea HOM05D006001 ORTHO05D006714 2.6e-75 286.6 354 58.2
BraA03t14592Z Brassica rapa HOM05D006001 ORTHO05D006714 6.3e-74 282.0 352 54.5
BcaC06g32880 Brassica carinata HOM05D006001 ORTHO05D006714 5.0e-63 245.7 347 49.9
THA.LOC104806890 Tarenaya hassleriana HOM05D006001 ORTHO05D006714 5.0e-63 245.7 353 48.4
THA.LOC104799788 Tarenaya hassleriana HOM05D006001 ORTHO05D006714 1.0e-44 184.9 308 45.1
Thecc.08G071800 Theobroma cacao HOM05D006001 ORTHO05D006714 1.7e-31 141.0 373 33.5
C07p53620 Brassica napus HOM05D006001 ORTHO05D006714 1.8e-28 131.0 233 44.2
Cpa.g.c29936.2 Carica papaya HOM05D006001 ORTHO05D006714 1.8e-28 131.0 371 38.0
Duzib128G1071 Durio zibethinus HOM05D006001 ORTHO05D006714 6.8e-28 129.0 384 34.4
GSVIVG01009188001 Vitis vinifera HOM05D006001 ORTHO05D006714 1.7e-26 124.4 376 37.0
QL12p023212 Quercus lobata HOM05D006001 ORTHO05D006714 2.4e-25 120.6 359 33.4
COL.COLO4_35255 Corchorus olitorius HOM05D006001 ORTHO05D006714 7.1e-25 119.0 362 35.9
CiPaw.03G148200 Carya illinoinensis HOM05D006001 ORTHO05D006714 1.2e-24 118.2 387 31.8
Duzib106G1137 Durio zibethinus HOM05D006001 ORTHO05D006714 1.2e-24 118.2 390 37.4
Ciclev10001506m.g Citrus clementina HOM05D006001 ORTHO05D006714 2.3e-23 114.0 386 37.0
Manes.18G058066 Manihot esculenta HOM05D006001 ORTHO05D006714 3.9e-23 113.2 354 33.1
Atru.chr13.1002 Acer truncatum HOM05D006001 ORTHO05D006714 5.1e-23 112.8 386 36.8
Haze_22467 Corylus avellana HOM05D006001 ORTHO05D006714 5.1e-23 112.8 374 36.6
MELO3C021835.2 Cucumis melo HOM05D006001 ORTHO05D006714 5.1e-23 112.8 354 32.8
Cfa013804 Carpinus fangiana HOM05D006001 ORTHO05D006714 1.5e-22 111.3 370 35.9
CsaV3_2G036230 Cucumis sativus L. HOM05D006001 ORTHO05D006714 4.3e-22 109.8 353 32.6
Eucgr.L02666 Eucalyptus grandis HOM05D006001 ORTHO05D006714 4.3e-22 109.8 371 32.9
TWI12G0152 Tripterygium wilfordii HOM05D006001 ORTHO05D006714 4.3e-22 109.8 337 33.2
TWI56G0486 Tripterygium wilfordii HOM05D006001 ORTHO05D006714 7.3e-22 109.0 379 37.7
MELO3C008828.2 Cucumis melo HOM05D006001 ORTHO05D006714 9.5e-22 108.6 348 33.0
ClCG09G016810 Citrullus lanatus HOM05D006001 ORTHO05D006714 2.1e-21 107.5 360 31.7
Eucgr.H00032 Eucalyptus grandis HOM05D006001 ORTHO05D006714 2.1e-21 107.5 371 32.6
QL09p017955 Quercus lobata HOM05D006001 ORTHO05D006714 2.8e-21 107.1 359 32.0
Haze_22468 Corylus avellana HOM05D006001 ORTHO05D006714 8.1e-21 105.5 375 34.4
Oeu063699.1 Olea europaea HOM05D006001 ORTHO05D006714 1.4e-20 104.8 348 31.9
Potri.002G111500 Populus trichocarpa HOM05D006001 ORTHO05D006714 3.1e-20 103.6 369 30.6
arahy.Tifrunner.gnm1.ann1.5459VI Arachis hypogaea HOM05D006001 ORTHO05D006714 2.0e-19 100.9 341 31.7
Gorai.009G346500 Gossypium raimondii HOM05D006001 ORTHO05D006714 3.4e-19 100.1 358 34.6
CiPaw.07G164600 Carya illinoinensis HOM05D006001 ORTHO05D006714 5.8e-19 99.4 377 32.4
Gohir.D05G322800 Gossypium hirsutum HOM05D006001 ORTHO05D006714 7.6e-19 99.0 362 33.4
Glyma.02G215100 Glycine max HOM05D006001 ORTHO05D006714 9.9e-19 98.6 355 30.7
CAN.G1700.2 Capsicum annuum HOM05D006001 ORTHO05D006714 1.7e-18 97.8 374 31.6
DCAR_023481 Daucus carota HOM05D006001 ORTHO05D006714 1.7e-18 97.8 413 31.2
PGSC0003DMG400002050 Solanum tuberosum HOM05D006001 ORTHO05D006714 2.9e-18 97.1 370 33.8
Gohir.A05G320600 Gossypium hirsutum HOM05D006001 ORTHO05D006714 3.8e-18 96.7 354 35.6
Potri.005G153300 Populus trichocarpa HOM05D006001 ORTHO05D006714 1.1e-17 95.1 357 30.8
Sabra02G0088000 Salix brachista HOM05D006001 ORTHO05D006714 1.1e-17 95.1 368 31.5
Sc04g0007160 Simmondsia chinensis HOM05D006001 ORTHO05D006714 1.1e-17 95.1 344 32.0
CANSAT11G1699 Cannabis sativa HOM05D006001 ORTHO05D006714 1.4e-17 94.7 345 32.5
Peaxi162Scf00160g00103 Petunia axillaris HOM05D006001 ORTHO05D006714 1.4e-17 94.7 401 29.9
PGR042G0630 Punica granatum HOM05D006001 ORTHO05D006714 1.4e-17 94.7 358 29.6
Dinv42605 Davidia involucrata HOM05D006001 ORTHO05D006714 4.2e-17 93.2 349 33.8
Nn6g34170 Nelumbo nucifera HOM05D006001 ORTHO05D006714 4.2e-17 93.2 356 31.2
Glyma.14G182400 Glycine max HOM05D006001 ORTHO05D006714 7.1e-17 92.4 360 33.3
Nitab4.5_0000354g0120 Nicotiana tabacum HOM05D006001 ORTHO05D006714 2.7e-16 90.5 360 33.3
PSO210G5625 Papaver somniferum HOM05D006001 ORTHO05D006714 2.7e-16 90.5 340 36.8
Sopen12g030020 Solanum pennellii HOM05D006001 ORTHO05D006714 6.0e-16 89.4 370 32.4
SGA_v2.0_scaffold20G09128 Striga asiatica HOM05D006001 ORTHO05D006714 6.0e-16 89.4 344 31.1
Ca_05452_v3 Cicer arietinum L. HOM05D006001 ORTHO05D006714 8.7e-15 85.5 357 33.3
TAR381G0479 Trochodendron aralioides HOM05D006001 ORTHO05D006714 1.1e-14 85.1 347 33.7
PSO170G4643 Papaver somniferum HOM05D006001 ORTHO05D006714 9.6e-14 82.0 334 33.8
arahy.Tifrunner.gnm1.ann1.X0SJ4P Arachis hypogaea HOM05D006001 ORTHO05D006714 1.2e-13 81.6 377 29.2
MBI16_g12475_MAGBIO Magnolia biondii HOM05D006001 ORTHO05D006714 1.6e-13 81.3 352 30.1
SalBow7G4402 Salvia bowleyana HOM05D006001 ORTHO05D006714 2.1e-13 80.9 392 29.1
SGA_v2.0_scaffold24G10238 Striga asiatica HOM05D006001 ORTHO05D006714 2.8e-13 80.5 342 30.7
Medtr5g066450 Medicago truncatula HOM05D006001 ORTHO05D006714 4.7e-13 79.7 348 30.5
LjContig00408g0013719 Lotus japonicus HOM05D006001 ORTHO05D006714 6.2e-13 79.3 352 30.1
Hund26817 Selenicereus undatus HOM05D006001 ORTHO05D006714 6.2e-13 79.3 359 30.4
Oeu034401.1 Olea europaea HOM05D006001 ORTHO05D006714 1.4e-12 78.2 366 28.1
HanXRQChr03g0093751 Helianthus annuus HOM05D006001 ORTHO05D006714 2.4e-12 77.4 345 29.9
Sopen04g030170 Solanum pennellii HOM05D006001 ORTHO05D006714 2.4e-12 77.4 351 28.2
Psat2g065160 Pisum sativum HOM05D006001 ORTHO05D006714 5.3e-12 76.3 369 29.3
Cc00_g15770 Coffea canephora HOM05D006001 ORTHO05D006714 5.8e-11 72.8 370 33.2
Solyc12g087990.3 Solanum lycopersicum HOM05D006001 ORTHO05D006714 5.8e-11 72.8 206 33.5
PGSC0003DMG400009339 Solanum tuberosum HOM05D006001 ORTHO05D006714 1.3e-10 71.6 348 29.3
Solyc04g076410.3 Solanum lycopersicum HOM05D006001 ORTHO05D006714 1.7e-10 71.2 342 28.4
Migut.C00706 Erythranthe guttata HOM05D006001 ORTHO05D006714 8.4e-10 68.9 362 31.2
Sed0021655 Sechium edule HOM05D006001 ORTHO05D006714 1.4e-09 68.2 89 49.4
Nitab4.5_0019796g0010 Nicotiana tabacum HOM05D006001 ORTHO05D006714 1.9e-09 67.8 81 45.7
CSS0018086 Camellia sinensis var. sinensis HOM05D006001 ORTHO05D006714 1.2e-08 65.1 416 27.9
CDE06G1720 Ceratophyllum demersum HOM05D006001 ORTHO05D006714 2.7e-08 63.9 112 42.0
DCAR_002596 Daucus carota HOM05D006001 ORTHO05D006714 6.0e-08 62.8 91 44.0
HPP92_021096 Vanilla planifolia HOM05D006001 ORTHO05D006714 6.0e-08 62.8 346 27.7
DCAR_000919 Daucus carota HOM05D006001 ORTHO05D006714 1.0e-07 62.0 91 44.0
Lsat_1_v5_gn_3_133380 Lactuca sativa HOM05D006001 ORTHO05D006714 1.0e-07 62.0 353 32.3
Sed0021215 Sechium edule HOM05D006001 ORTHO05D006714 1.7e-07 61.2 91 40.7
ECA240G2279 Erigeron canadensis HOM05D006001 ORTHO05D006714 2.3e-07 60.8 80 43.8
unitig_578.g16728 Utricularia gibba HOM05D006001 ORTHO05D006714 2.3e-07 60.8 345 27.8
SHI11237 Sapria himalayana HOM05D006001 ORTHO05D006714 3.0e-07 60.5 82 41.5
MD08G1199700 Malus domestica HOM05D006001 ORTHO05D006714 3.9e-07 60.1 353 27.8
Prupe.1G533200 Prunus persica HOM05D006001 ORTHO05D006714 3.9e-07 60.1 417 27.6
FvH4_5g34870 Fragaria vesca HOM05D006001 ORTHO05D006714 5.1e-07 59.7 193 33.7
Lalb_Chr17g0344581 Lupinus albus HOM05D006001 ORTHO05D006714 8.7e-07 58.9 343 27.7
Phvul.008G182500 Phaseolus vulgaris HOM05D006001 ORTHO05D006714 8.7e-07 58.9 404 25.2
FAN08G3160 Fragaria x ananassa HOM05D006001 ORTHO05D006714 1.9e-06 57.8 158 33.5
TPR.G34712 Trifolium pratense HOM05D006001 ORTHO05D006714 1.9e-06 57.8 343 30.6
FAN18G3411 Fragaria x ananassa HOM05D006001 ORTHO05D006714 4.3e-06 56.6 221 31.7
Nn5g29866 Nelumbo nucifera HOM05D006001 ORTHO05D006714 4.3e-06 56.6 291 26.8
Lj4A738G22 Lonicera japonica HOM05D006001 ORTHO05D006714 7.3e-06 55.8 414 26.3
CDE04G0496 Ceratophyllum demersum HOM05D006001 ORTHO05D006714 9.6e-06 55.5 350 25.4


User provided reference genes

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