Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG4G8210 Aethionema arabicum HOM05D002704 ORTHO05D002891 1.7e-109 399.4 211 100.0
Sp5g33290 Schrenkiella parvula HOM05D002704 ORTHO05D002891 7.6e-62 241.1 221 63.8
Thhalv10019097m.g Eutrema salsugineum HOM05D002704 ORTHO05D002891 8.4e-61 237.7 222 64.4
A07p27670 Brassica napus HOM05D002704 ORTHO05D002891 1.1e-57 227.3 221 59.3
AL2G38480 Arabidopsis lyrata HOM05D002704 ORTHO05D002891 3.3e-57 225.7 225 61.8
BraA07t30408Z Brassica rapa HOM05D002704 ORTHO05D002891 5.6e-57 224.9 221 59.3
CARHR071630 Cardamine hirsuta HOM05D002704 ORTHO05D002891 1.1e-55 220.7 229 60.7
AT1G78170 Arabidopsis thaliana HOM05D002704 ORTHO05D002891 3.1e-55 219.2 225 60.4
Carub.0002s2506 Capsella rubella HOM05D002704 ORTHO05D002891 3.1e-55 219.2 223 63.2
BcaC08g47392 Brassica carinata HOM05D002704 ORTHO05D002891 1.0e-53 214.2 218 59.2
C06p52120 Brassica napus HOM05D002704 ORTHO05D002891 1.0e-53 214.2 218 59.2
BolC6t40235H Brassica oleracea HOM05D002704 ORTHO05D002891 1.0e-53 214.2 218 59.2
BcaC08g45431 Brassica carinata HOM05D002704 ORTHO05D002891 8.4e-53 211.1 239 58.6
C06p30640 Brassica napus HOM05D002704 ORTHO05D002891 8.4e-53 211.1 239 58.6
BolC6t38228H Brassica oleracea HOM05D002704 ORTHO05D002891 8.4e-53 211.1 239 58.6
BcaB03g15984 Brassica carinata HOM05D002704 ORTHO05D002891 4.6e-51 205.3 225 56.0
BcaB05g25124 Brassica carinata HOM05D002704 ORTHO05D002891 6.0e-51 204.9 223 56.5
BcaB02g07152 Brassica carinata HOM05D002704 ORTHO05D002891 2.0e-46 189.9 225 51.6
BraA02t07210Z Brassica rapa HOM05D002704 ORTHO05D002891 9.3e-44 181.0 222 51.8
A07p43470 Brassica napus HOM05D002704 ORTHO05D002891 5.1e-42 175.3 218 56.4
BraA07t31860Z Brassica rapa HOM05D002704 ORTHO05D002891 5.1e-42 175.3 218 56.4
A02p22080 Brassica napus HOM05D002704 ORTHO05D002891 5.7e-41 171.8 225 49.8
BolC2t09563H Brassica oleracea HOM05D002704 ORTHO05D002891 7.4e-41 171.4 222 51.8
THA.LOC104809714 Tarenaya hassleriana HOM05D002704 ORTHO05D002891 1.8e-39 166.8 224 48.2
Aa31LG7G6190 Aethionema arabicum HOM05D002704 ORTHO05D002891 2.2e-37 159.8 223 49.3
THA.LOC104800151 Tarenaya hassleriana HOM05D002704 ORTHO05D002891 1.4e-34 150.6 212 48.1
Carub.0001s2180 Capsella rubella HOM05D002704 ORTHO05D002891 1.3e-32 144.1 215 50.7
Sp1g19760 Schrenkiella parvula HOM05D002704 ORTHO05D002891 4.8e-32 142.1 209 45.5
BraA07t29205Z Brassica rapa HOM05D002704 ORTHO05D002891 6.3e-32 141.7 220 44.5
AT1G22250 Arabidopsis thaliana HOM05D002704 ORTHO05D002891 8.2e-32 141.4 219 44.7
A07p14590 Brassica napus HOM05D002704 ORTHO05D002891 8.2e-32 141.4 220 44.5
A09p42520 Brassica napus HOM05D002704 ORTHO05D002891 4.1e-31 139.0 218 46.8
BraA09t39728Z Brassica rapa HOM05D002704 ORTHO05D002891 4.1e-31 139.0 218 46.8
BcaC06g34946 Brassica carinata HOM05D002704 ORTHO05D002891 3.4e-30 136.0 220 44.1
C07p21480 Brassica napus HOM05D002704 ORTHO05D002891 3.4e-30 136.0 220 44.1
BolC7t42674H Brassica oleracea HOM05D002704 ORTHO05D002891 3.4e-30 136.0 220 44.1
Thhalv10008815m.g Eutrema salsugineum HOM05D002704 ORTHO05D002891 3.4e-30 136.0 216 44.4
BolC5t30835H Brassica oleracea HOM05D002704 ORTHO05D002891 5.9e-30 135.2 219 44.3
C05p21380 Brassica napus HOM05D002704 ORTHO05D002891 1.7e-29 133.7 201 46.8
BcaB03g14224 Brassica carinata HOM05D002704 ORTHO05D002891 3.6e-27 125.9 214 41.6
AL1G35710 Arabidopsis lyrata HOM05D002704 ORTHO05D002891 2.3e-26 123.2 211 45.5
BcaB03g14223 Brassica carinata HOM05D002704 ORTHO05D002891 3.0e-26 122.9 212 40.6
BcaC05g26153 Brassica carinata HOM05D002704 ORTHO05D002891 3.0e-26 122.9 201 44.8
Dinv44770 Davidia involucrata HOM05D002704 ORTHO05D002891 3.7e-24 115.9 208 37.0
BcaB07g32247 Brassica carinata HOM05D002704 ORTHO05D002891 8.2e-24 114.8 216 38.4
CARHR022620 Cardamine hirsuta HOM05D002704 ORTHO05D002891 2.4e-23 113.2 150 48.7
Dinv14325 Davidia involucrata HOM05D002704 ORTHO05D002891 3.1e-23 112.8 213 39.0
Gohir.D05G229400 Gossypium hirsutum HOM05D002704 ORTHO05D002891 2.5e-20 103.2 207 36.7
Gorai.009G237500 Gossypium raimondii HOM05D002704 ORTHO05D002891 2.5e-20 103.2 207 36.7
Hma1.2p1_0237F.1_g099460 Hydrangea macrophylla HOM05D002704 ORTHO05D002891 2.5e-20 103.2 173 39.3
A01p24680 Brassica napus HOM05D002704 ORTHO05D002891 5.5e-20 102.1 122 52.5
BraA01t02380Z Brassica rapa HOM05D002704 ORTHO05D002891 5.5e-20 102.1 122 52.5
Gohir.A05G226700 Gossypium hirsutum HOM05D002704 ORTHO05D002891 5.5e-20 102.1 207 36.2
Atru.chr13.1197 Acer truncatum HOM05D002704 ORTHO05D002891 7.2e-20 101.7 229 34.9
Duzib041G0800 Durio zibethinus HOM05D002704 ORTHO05D002891 7.2e-20 101.7 176 39.2
Duzib116G0617 Durio zibethinus HOM05D002704 ORTHO05D002891 7.2e-20 101.7 189 38.6
Manes.18G067800 Manihot esculenta HOM05D002704 ORTHO05D002891 9.4e-20 101.3 212 35.8
Cpa.g.sc36.127 Carica papaya HOM05D002704 ORTHO05D002891 2.1e-19 100.1 206 35.9
QL12p036715 Quercus lobata HOM05D002704 ORTHO05D002891 2.7e-19 99.8 210 35.7
Ciclev10002416m.g Citrus clementina HOM05D002704 ORTHO05D002891 6.1e-19 98.6 211 35.5
MBI05_g19349_MAGBIO Magnolia biondii HOM05D002704 ORTHO05D002891 1.0e-18 97.8 202 33.2
Actinidia10319 Actinidia chinensis HOM05D002704 ORTHO05D002891 1.4e-18 97.4 181 39.2
Duzib093G0662 Durio zibethinus HOM05D002704 ORTHO05D002891 1.4e-18 97.4 215 35.3
Lj4C103T16 Lonicera japonica HOM05D002704 ORTHO05D002891 1.4e-18 97.4 211 37.4
GSVIVG01009025001 Vitis vinifera HOM05D002704 ORTHO05D002891 1.8e-18 97.1 185 37.8
Nn5g30117 Nelumbo nucifera HOM05D002704 ORTHO05D002891 2.3e-18 96.7 177 33.3
Thecc.08G107400 Theobroma cacao HOM05D002704 ORTHO05D002891 2.3e-18 96.7 214 36.0
Manes.02G153000 Manihot esculenta HOM05D002704 ORTHO05D002891 3.0e-18 96.3 189 34.9
Potri.005G165300 Populus trichocarpa HOM05D002704 ORTHO05D002891 1.5e-17 94.0 205 34.1
BcaB02g07151 Brassica carinata HOM05D002704 ORTHO05D002891 3.3e-17 92.8 161 43.5
Nn1g05351 Nelumbo nucifera HOM05D002704 ORTHO05D002891 4.4e-17 92.4 190 35.3
Oeu012923.1 Olea europaea HOM05D002704 ORTHO05D002891 4.4e-17 92.4 216 33.8
Actinidia27183 Actinidia chinensis HOM05D002704 ORTHO05D002891 5.7e-17 92.0 185 36.2
Nitab4.5_0005777g0010 Nicotiana tabacum HOM05D002704 ORTHO05D002891 5.7e-17 92.0 176 39.8
TAR625G1386 Trochodendron aralioides HOM05D002704 ORTHO05D002891 1.7e-16 90.5 185 34.1
CAN.G101.15 Capsicum annuum HOM05D002704 ORTHO05D002891 2.2e-16 90.1 201 34.8
COL.COLO4_16406 Corchorus olitorius HOM05D002704 ORTHO05D002891 2.8e-16 89.7 233 34.3
DCAR_029361 Daucus carota HOM05D002704 ORTHO05D002891 2.8e-16 89.7 171 36.8
Nitab4.5_0000232g0230 Nicotiana tabacum HOM05D002704 ORTHO05D002891 2.8e-16 89.7 198 37.4
Phvul.009G030900 Phaseolus vulgaris HOM05D002704 ORTHO05D002891 2.8e-16 89.7 210 34.3
Solyc04g074080.3 Solanum lycopersicum HOM05D002704 ORTHO05D002891 2.8e-16 89.7 203 35.5
MSTRG.24460 Avicennia marina HOM05D002704 ORTHO05D002891 3.7e-16 89.4 155 36.1
Gohir.A02G076100 Gossypium hirsutum HOM05D002704 ORTHO05D002891 8.2e-16 88.2 175 36.6
Rhsim06G0082500 Rhododendron simsii HOM05D002704 ORTHO05D002891 1.1e-15 87.8 231 32.5
PGSC0003DMG400006402 Solanum tuberosum HOM05D002704 ORTHO05D002891 1.4e-15 87.4 199 36.2
TAR381G1126 Trochodendron aralioides HOM05D002704 ORTHO05D002891 1.4e-15 87.4 214 32.7
TAR628G0302 Trochodendron aralioides HOM05D002704 ORTHO05D002891 1.4e-15 87.4 169 36.7
Glyma.14G172800 Glycine max HOM05D002704 ORTHO05D002891 1.8e-15 87.0 198 37.4
Peaxi162Scf00041g00165 Petunia axillaris HOM05D002704 ORTHO05D002891 1.8e-15 87.0 170 39.4
MSTRG.22153 Avicennia marina HOM05D002704 ORTHO05D002891 2.4e-15 86.7 217 33.6
CSS0027836 Camellia sinensis var. sinensis HOM05D002704 ORTHO05D002891 2.4e-15 86.7 201 31.8
Lsat_1_v5_gn_9_41620 Lactuca sativa HOM05D002704 ORTHO05D002891 2.4e-15 86.7 201 33.8
Cc10_g07250 Coffea canephora HOM05D002704 ORTHO05D002891 4.1e-15 85.9 225 36.0
Prupe.1G516300 Prunus persica HOM05D002704 ORTHO05D002891 5.3e-15 85.5 196 34.2
Lj1g0002648 Lotus japonicus HOM05D002704 ORTHO05D002891 7.0e-15 85.1 199 34.2
VMungo1309G0496 Vigna mungo HOM05D002704 ORTHO05D002891 7.0e-15 85.1 213 33.8
Sabra02G0075700 Salix brachista HOM05D002704 ORTHO05D002891 1.2e-14 84.3 215 34.9
CiPaw.08G044800 Carya illinoinensis HOM05D002704 ORTHO05D002891 2.0e-14 83.6 213 32.4
Potri.002G096100 Populus trichocarpa HOM05D002704 ORTHO05D002891 2.6e-14 83.2 212 37.3
Nitab4.5_0000421g0060 Nicotiana tabacum HOM05D002704 ORTHO05D002891 3.5e-14 82.8 150 36.7
Gohir.D02G083400 Gossypium hirsutum HOM05D002704 ORTHO05D002891 4.5e-14 82.4 171 36.3
TWI56G1046 Tripterygium wilfordii HOM05D002704 ORTHO05D002891 5.9e-14 82.0 217 32.7
Gorai.005G094000 Gossypium raimondii HOM05D002704 ORTHO05D002891 1.0e-13 81.3 163 35.6
Lalb_Chr10g0102361 Lupinus albus HOM05D002704 ORTHO05D002891 1.3e-13 80.9 203 33.0
MD15G1368100 Malus domestica HOM05D002704 ORTHO05D002891 1.3e-13 80.9 184 34.8
Psat2g072240 Pisum sativum HOM05D002704 ORTHO05D002891 1.3e-13 80.9 198 34.3
unitig_8.g4838 Utricularia gibba HOM05D002704 ORTHO05D002891 1.3e-13 80.9 208 35.6
HanXRQChr15g0491861 Helianthus annuus HOM05D002704 ORTHO05D002891 1.7e-13 80.5 203 32.0
Sc23g0000210 Simmondsia chinensis HOM05D002704 ORTHO05D002891 1.7e-13 80.5 201 31.8
TWI12G0499 Tripterygium wilfordii HOM05D002704 ORTHO05D002891 2.2e-13 80.1 210 30.5
Lalb_Chr11g0065441 Lupinus albus HOM05D002704 ORTHO05D002891 2.9e-13 79.7 203 31.0
Oeu046295.1 Olea europaea HOM05D002704 ORTHO05D002891 5.0e-13 79.0 208 31.2
Hund16912 Selenicereus undatus HOM05D002704 ORTHO05D002891 6.5e-13 78.6 178 35.4
arahy.Tifrunner.gnm1.ann1.8HDV7G Arachis hypogaea HOM05D002704 ORTHO05D002891 8.5e-13 78.2 198 33.3
vmacro21275 Vaccinium macrocarpon HOM05D002704 ORTHO05D002891 1.1e-12 77.8 63 58.7
Ca_15248_v3 Cicer arietinum L. HOM05D002704 ORTHO05D002891 1.5e-12 77.4 220 30.9
Nitab4.5_0002098g0040 Nicotiana tabacum HOM05D002704 ORTHO05D002891 1.9e-12 77.0 146 36.3
Hund26960 Selenicereus undatus HOM05D002704 ORTHO05D002891 2.5e-12 76.6 186 31.7
arahy.Tifrunner.gnm1.ann1.5JIN69 Arachis hypogaea HOM05D002704 ORTHO05D002891 3.2e-12 76.3 67 53.7
Glyma.04G102400 Glycine max HOM05D002704 ORTHO05D002891 3.2e-12 76.3 209 32.1
Aqoxy6G00791 Aquilegia oxysepala HOM05D002704 ORTHO05D002891 4.2e-12 75.9 164 34.1
AUR62038516 Chenopodium quinoa HOM05D002704 ORTHO05D002891 4.2e-12 75.9 181 30.9
arahy.Tifrunner.gnm1.ann1.AF75R2 Arachis hypogaea HOM05D002704 ORTHO05D002891 5.5e-12 75.5 56 58.9
Glyma.13G088900 Glycine max HOM05D002704 ORTHO05D002891 5.5e-12 75.5 211 33.2
Ah.05g170030 Amaranthus hybridus HOM05D002704 ORTHO05D002891 7.2e-12 75.1 178 31.5
Migut.N02898 Erythranthe guttata HOM05D002704 ORTHO05D002891 7.2e-12 75.1 140 43.6
PSO210G1059 Papaver somniferum HOM05D002704 ORTHO05D002891 7.2e-12 75.1 167 33.5
Lalb_Chr04g0253151 Lupinus albus HOM05D002704 ORTHO05D002891 9.4e-12 74.7 206 30.6
PSO541G2691 Papaver somniferum HOM05D002704 ORTHO05D002891 9.4e-12 74.7 82 47.6
Ca_05274_v3 Cicer arietinum L. HOM05D002704 ORTHO05D002891 1.2e-11 74.3 202 32.7
MELO3C003450.2 Cucumis melo HOM05D002704 ORTHO05D002891 1.2e-11 74.3 177 34.5
CiPaw.07G180300 Carya illinoinensis HOM05D002704 ORTHO05D002891 2.7e-11 73.2 95 45.3
Glyma.06G103700 Glycine max HOM05D002704 ORTHO05D002891 2.7e-11 73.2 224 29.5
TPR.G32999 Trifolium pratense HOM05D002704 ORTHO05D002891 2.7e-11 73.2 138 35.5
unitig_578.g16200 Utricularia gibba HOM05D002704 ORTHO05D002891 2.7e-11 73.2 201 31.3
FAN04G1068 Fragaria x ananassa HOM05D002704 ORTHO05D002891 3.6e-11 72.8 165 34.5
PSO447G0371 Papaver somniferum HOM05D002704 ORTHO05D002891 3.6e-11 72.8 168 34.5
VMungo0647G0311 Vigna mungo HOM05D002704 ORTHO05D002891 4.7e-11 72.4 204 28.9
FAN08G2281 Fragaria x ananassa HOM05D002704 ORTHO05D002891 6.1e-11 72.0 191 34.0
Phvul.008G173300 Phaseolus vulgaris HOM05D002704 ORTHO05D002891 6.1e-11 72.0 203 30.5
MD08G1182400 Malus domestica HOM05D002704 ORTHO05D002891 8.0e-11 71.6 188 33.5
PSO781G0307 Papaver somniferum HOM05D002704 ORTHO05D002891 1.0e-10 71.2 205 28.8
CDE04G0076 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 1.4e-10 70.9 187 29.9
FvH4_5g37370 Fragaria vesca HOM05D002704 ORTHO05D002891 1.8e-10 70.5 191 33.5
FAN13G2774 Fragaria x ananassa HOM05D002704 ORTHO05D002891 1.8e-10 70.5 191 33.5
FAN18G1803 Fragaria x ananassa HOM05D002704 ORTHO05D002891 1.8e-10 70.5 191 33.5
ClCG11G015290 Citrullus lanatus HOM05D002704 ORTHO05D002891 2.3e-10 70.1 179 33.0
EL10Ac1g01225 Beta vulgaris HOM05D002704 ORTHO05D002891 3.0e-10 69.7 215 28.8
AUR62027750 Chenopodium quinoa HOM05D002704 ORTHO05D002891 6.8e-10 68.6 182 29.7
Sed0020547 Sechium edule HOM05D002704 ORTHO05D002891 6.8e-10 68.6 179 30.2
Sc01g0000430 Simmondsia chinensis HOM05D002704 ORTHO05D002891 6.8e-10 68.6 37 70.3
AL6G41650 Arabidopsis lyrata HOM05D002704 ORTHO05D002891 8.8e-10 68.2 84 40.5
unitig_578.g16524 Utricularia gibba HOM05D002704 ORTHO05D002891 1.2e-09 67.8 89 44.9
Eucgr.B00020 Eucalyptus grandis HOM05D002704 ORTHO05D002891 1.5e-09 67.4 172 31.4
Medtr3g074450 Medicago truncatula HOM05D002704 ORTHO05D002891 1.5e-09 67.4 213 29.6
AT4G08910 Arabidopsis thaliana HOM05D002704 ORTHO05D002891 2.0e-09 67.0 128 35.2
Lalb_Chr23g0270591 Lupinus albus HOM05D002704 ORTHO05D002891 2.6e-09 66.6 218 29.4
Psat5g138480 Pisum sativum HOM05D002704 ORTHO05D002891 2.6e-09 66.6 206 29.6
CsaV3_3G048710 Cucumis sativus L. HOM05D002704 ORTHO05D002891 3.4e-09 66.2 178 29.8
Sed0024849 Sechium edule HOM05D002704 ORTHO05D002891 3.4e-09 66.2 165 32.7
CANSAT25G0913 Cannabis sativa HOM05D002704 ORTHO05D002891 5.7e-09 65.5 239 28.5
Eucgr.F02409 Eucalyptus grandis HOM05D002704 ORTHO05D002891 5.7e-09 65.5 173 30.6
CARHR259930 Cardamine hirsuta HOM05D002704 ORTHO05D002891 7.5e-09 65.1 97 36.1
Carub.0006s2748 Capsella rubella HOM05D002704 ORTHO05D002891 9.8e-09 64.7 94 39.4
TPR.G34534 Trifolium pratense HOM05D002704 ORTHO05D002891 9.8e-09 64.7 216 30.6
RcHm_v2.0_Chr7g0239041 Rosa chinensis HOM05D002704 ORTHO05D002891 1.7e-08 63.9 191 32.5
Haze_22261 Corylus avellana HOM05D002704 ORTHO05D002891 4.8e-08 62.4 153 36.6
MELO3C011023.2 Cucumis melo HOM05D002704 ORTHO05D002891 8.3e-08 61.6 181 29.8
ATR0782G003 Amborella trichopoda HOM05D002704 ORTHO05D002891 1.4e-07 60.8 174 28.7
Thhalv10028969m.g Eutrema salsugineum HOM05D002704 ORTHO05D002891 1.4e-07 60.8 74 40.5
CDE10G0994 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 2.4e-07 60.1 172 32.0
CsaV3_2G029650 Cucumis sativus L. HOM05D002704 ORTHO05D002891 2.4e-07 60.1 180 31.1
Medtr5g063720 Medicago truncatula HOM05D002704 ORTHO05D002891 3.1e-07 59.7 207 30.0
Sp6g08890 Schrenkiella parvula HOM05D002704 ORTHO05D002891 3.1e-07 59.7 46 54.3
TAR633G1006 Trochodendron aralioides HOM05D002704 ORTHO05D002891 3.1e-07 59.7 214 26.2
CDE10G0971 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 4.1e-07 59.3 213 30.5
Os03g0191200 Oryza sativa ssp. japonica HOM05D002704 ORTHO05D002891 7.0e-07 58.5 38 60.5
THA.LOC104816761 Tarenaya hassleriana HOM05D002704 ORTHO05D002891 7.0e-07 58.5 43 58.1
ClCG08G011070 Citrullus lanatus HOM05D002704 ORTHO05D002891 9.1e-07 58.2 163 27.0
Zm00001eb401340 Zea mays HOM05D002704 ORTHO05D002891 1.2e-06 57.8 53 50.9
HPP92_011168 Vanilla planifolia HOM05D002704 ORTHO05D002891 2.0e-06 57.0 53 43.4
HPP92_011170 Vanilla planifolia HOM05D002704 ORTHO05D002891 2.0e-06 57.0 53 43.4
ECA232G3648 Erigeron canadensis HOM05D002704 ORTHO05D000131 3.5e-06 56.2 174 31.6
MBI08_g28697_MAGBIO Magnolia biondii HOM05D002704 ORTHO05D002891 4.5e-06 55.8 88 39.8
Aqoxy2G04081 Aquilegia oxysepala HOM05D002704 ORTHO05D002891 7.7e-06 55.1 147 28.6
Aqoxy6G02333 Aquilegia oxysepala HOM05D002704 ORTHO05D002891 7.7e-06 55.1 147 28.6


User provided reference genes

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