Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG4G540 Aethionema arabicum HOM05D004952 ORTHO05D006131 0.0e+00 1973.4 995 100.0
Sp5g35550 Schrenkiella parvula HOM05D004952 ORTHO05D006131 0.0e+00 1507.7 1050 75.7
Thhalv10018067m.g Eutrema salsugineum HOM05D004952 ORTHO05D006131 0.0e+00 1500.3 1050 75.7
Carub.0001s2004 Capsella rubella HOM05D004952 ORTHO05D006131 0.0e+00 1444.1 1039 74.3
BcaB05g25284 Brassica carinata HOM05D004952 ORTHO05D006131 0.0e+00 1428.3 1038 73.8
A02p23690 Brassica napus HOM05D004952 ORTHO05D006131 0.0e+00 1409.4 1041 73.1
BcaC03g15988 Brassica carinata HOM05D004952 ORTHO05D006131 0.0e+00 1407.9 1037 73.2
AT1G20570 Arabidopsis thaliana HOM05D004952 ORTHO05D006131 0.0e+00 1400.2 1034 72.9
BraA02t07362Z Brassica rapa HOM05D004952 ORTHO05D006131 0.0e+00 1399.4 1051 72.3
BcaB02g07284 Brassica carinata HOM05D004952 ORTHO05D006131 0.0e+00 1392.5 1041 71.9
BolC2t09757H Brassica oleracea HOM05D004952 ORTHO05D006131 0.0e+00 1392.5 996 74.6
C02p37450 Brassica napus HOM05D004952 ORTHO05D006131 0.0e+00 1384.8 998 74.2
THA.LOC104813523 Tarenaya hassleriana HOM05D004952 ORTHO05D006131 0.0e+00 1223.4 1008 65.3
CARHR074230 Cardamine hirsuta HOM05D004952 ORTHO05D006131 0.0e+00 1222.6 895 73.1
AT1G80260 Arabidopsis thaliana HOM05D004952 ORTHO05D006131 0.0e+00 1207.6 899 72.2
Atru.chr13.612 Acer truncatum HOM05D004952 ORTHO05D006131 4.4e-309 1064.7 1022 56.8
Cpa.g.sc64.8 Carica papaya HOM05D004952 ORTHO05D006131 9.7e-301 1036.9 1008 56.6
Cfa003370 Carpinus fangiana HOM05D004952 ORTHO05D006131 4.1e-299 1031.6 981 57.8
QL02p006188 Quercus lobata HOM05D004952 ORTHO05D006131 1.2e-298 1030.0 1054 55.9
Ciclev10000139m.g Citrus clementina HOM05D004952 ORTHO05D006131 4.5e-298 1028.1 1063 54.4
CiPaw.16G049700 Carya illinoinensis HOM05D004952 ORTHO05D006131 2.2e-292 1009.2 1024 55.3
TAR381G0370 Trochodendron aralioides HOM05D004952 ORTHO05D006131 1.8e-291 1006.1 1023 54.2
TWI36G1022 Tripterygium wilfordii HOM05D004952 ORTHO05D006131 3.1e-291 1005.4 1028 54.9
vmacro02786 Vaccinium macrocarpon HOM05D004952 ORTHO05D006131 5.4e-291 1004.6 979 56.7
MD15G1036000 Malus domestica HOM05D004952 ORTHO05D006131 4.0e-286 988.4 1013 54.9
FAN15G3424 Fragaria x ananassa HOM05D004952 ORTHO05D006131 3.4e-285 985.3 1017 54.6
Rhsim13G0049200 Rhododendron simsii HOM05D004952 ORTHO05D006131 9.8e-285 983.8 1041 53.4
Hma1.2p1_0260F.1_g104650 Hydrangea macrophylla HOM05D004952 ORTHO05D006131 2.4e-283 979.2 1024 54.2
FAN27G3039 Fragaria x ananassa HOM05D004952 ORTHO05D006131 1.2e-282 976.9 1015 54.6
Gohir.A10G194100 Gossypium hirsutum HOM05D004952 ORTHO05D006131 4.5e-282 974.9 1028 53.2
Duzib114G0971 Durio zibethinus HOM05D004952 ORTHO05D006131 5.9e-282 974.5 1023 53.7
FvH4_2g40750 Fragaria vesca HOM05D004952 ORTHO05D006131 3.8e-281 971.8 1010 54.4
Lj1g0021809 Lotus japonicus HOM05D004952 ORTHO05D006131 5.0e-281 971.5 1020 53.1
RcHm_v2.0_Chr6g0299841 Rosa chinensis HOM05D004952 ORTHO05D006131 1.5e-280 969.9 1012 54.2
Gohir.D10G201200 Gossypium hirsutum HOM05D004952 ORTHO05D006131 1.0e-278 963.8 1028 52.7
Glyma.06G036500 Glycine max HOM05D004952 ORTHO05D006131 6.8e-278 961.1 1031 52.3
Gorai.011G225900 Gossypium raimondii HOM05D004952 ORTHO05D006131 1.5e-277 959.9 1028 52.6
Nn6g34572 Nelumbo nucifera HOM05D004952 ORTHO05D006131 2.6e-277 959.1 1065 50.9
CANSAT25G3148 Cannabis sativa HOM05D004952 ORTHO05D006131 3.7e-276 955.3 1029 52.7
Lalb_Chr08g0245691 Lupinus albus HOM05D004952 ORTHO05D006131 4.1e-275 951.8 1028 52.2
arahy.Tifrunner.gnm1.ann1.LUQS0S Arachis hypogaea HOM05D004952 ORTHO05D006131 1.0e-273 947.2 1036 51.7
Ca_15974_v3 Cicer arietinum L. HOM05D004952 ORTHO05D006131 2.3e-273 946.0 1012 53.1
Medtr3g101230 Medicago truncatula HOM05D004952 ORTHO05D006131 1.1e-272 943.7 1021 51.7
arahy.Tifrunner.gnm1.ann1.SSY1YH Arachis hypogaea HOM05D004952 ORTHO05D006131 1.5e-272 943.3 1036 51.7
CsaV3_4G034010 Cucumis sativus L. HOM05D004952 ORTHO05D006131 9.5e-272 940.6 1017 53.1
Phvul.009G062500 Phaseolus vulgaris HOM05D004952 ORTHO05D006131 1.6e-271 939.9 1031 52.1
Sed0020372 Sechium edule HOM05D004952 ORTHO05D006131 1.6e-271 939.9 1011 52.9
VMungo1309G1417 Vigna mungo HOM05D004952 ORTHO05D006131 3.6e-271 938.7 1028 51.6
Sabra16G0008200 Salix brachista HOM05D004952 ORTHO05D006131 1.4e-270 936.8 1112 49.8
Eucgr.F02379 Eucalyptus grandis HOM05D004952 ORTHO05D006131 2.3e-270 936.0 1059 51.1
ClCG05G019550 Citrullus lanatus HOM05D004952 ORTHO05D006131 1.5e-269 933.3 1026 52.4
Nitab4.5_0000068g0320 Nicotiana tabacum HOM05D004952 ORTHO05D006131 2.6e-269 932.6 1012 52.4
Peaxi162Scf01092g00128 Petunia axillaris HOM05D004952 ORTHO05D006131 5.8e-269 931.4 975 53.2
Prupe.1G389900 Prunus persica HOM05D004952 ORTHO05D006131 9.8e-269 930.6 900 57.3
CANSAT35G0575 Cannabis sativa HOM05D004952 ORTHO05D006131 4.9e-268 928.3 1018 51.9
Psat5g044920 Pisum sativum HOM05D004952 ORTHO05D006131 8.3e-268 927.5 1016 51.8
PGSC0003DMG400008031 Solanum tuberosum HOM05D004952 ORTHO05D006131 1.4e-267 926.8 1014 51.9
DCAR_008784 Daucus carota HOM05D004952 ORTHO05D006131 1.9e-267 926.4 1014 52.0
CAN.G371.63 Capsicum annuum HOM05D004952 ORTHO05D006131 2.0e-266 922.9 1015 51.2
COL.COLO4_06475 Corchorus olitorius HOM05D004952 ORTHO05D006131 1.3e-265 920.2 1017 51.6
Haze_25582 Corylus avellana HOM05D004952 ORTHO05D006131 1.7e-265 919.8 1050 51.0
Sc18g0002370 Simmondsia chinensis HOM05D004952 ORTHO05D006131 3.9e-265 918.7 1006 50.0
PGR031G2121 Punica granatum HOM05D004952 ORTHO05D006131 5.0e-265 918.3 1021 50.9
HanXRQChr02g0059171 Helianthus annuus HOM05D004952 ORTHO05D006131 6.6e-265 917.9 990 52.0
Sopen04g033000 Solanum pennellii HOM05D004952 ORTHO05D006131 6.6e-265 917.9 1016 51.2
Aqoxy6G00884 Aquilegia oxysepala HOM05D004952 ORTHO05D006131 1.1e-264 917.1 1039 50.4
Solyc04g079390.3 Solanum lycopersicum HOM05D004952 ORTHO05D006131 4.3e-264 915.2 1016 51.2
Manes.10G059950 Manihot esculenta HOM05D004952 ORTHO05D006131 1.5e-261 906.7 1004 52.3
Lj4C49T7 Lonicera japonica HOM05D004952 ORTHO05D006131 2.6e-261 906.0 1004 51.3
PSO063G1848 Papaver somniferum HOM05D004952 ORTHO05D006131 2.6e-261 906.0 1057 49.1
Manes.02G076400 Manihot esculenta HOM05D004952 ORTHO05D006131 4.4e-261 905.2 860 57.8
Nitab4.5_0012613g0030 Nicotiana tabacum HOM05D004952 ORTHO05D006131 2.4e-259 899.4 1012 51.1
GSVIVG01009573001 Vitis vinifera HOM05D004952 ORTHO05D006131 9.2e-259 897.5 998 50.9
Lsat_1_v5_gn_6_69040 Lactuca sativa HOM05D004952 ORTHO05D006131 2.1e-258 896.3 1010 51.0
SalBow7G3268 Salvia bowleyana HOM05D004952 ORTHO05D006131 1.5e-253 880.2 1004 49.7
Actinidia03540 Actinidia chinensis HOM05D004952 ORTHO05D006131 9.9e-253 877.5 980 51.3
MELO3C016726.2 Cucumis melo HOM05D004952 ORTHO05D006131 1.3e-252 877.1 1056 49.7
MSTRG.25114 Avicennia marina HOM05D004952 ORTHO05D006131 6.4e-252 874.8 1026 48.7
TPR.G26027 Trifolium pratense HOM05D004952 ORTHO05D006131 1.1e-251 874.0 890 54.6
Migut.C00614 Erythranthe guttata HOM05D004952 ORTHO05D006131 1.9e-251 873.2 1014 49.3
CSS0007693 Camellia sinensis var. sinensis HOM05D004952 ORTHO05D006131 4.3e-248 862.1 1255 43.3
EL10Ac2g03413 Beta vulgaris HOM05D004952 ORTHO05D006131 6.8e-246 854.7 1074 47.0
TAR625G1292 Trochodendron aralioides HOM05D004952 ORTHO05D006131 7.1e-243 844.7 1036 47.5
Oeu055752.1 Olea europaea HOM05D004952 ORTHO05D006131 2.3e-241 839.7 1017 48.5
AUR62038364 Chenopodium quinoa HOM05D004952 ORTHO05D006131 6.6e-241 838.2 1013 47.9
BcaC08g45301 Brassica carinata HOM05D004952 ORTHO05D006131 7.3e-240 834.7 874 56.4
AUR62040965 Chenopodium quinoa HOM05D004952 ORTHO05D006131 3.1e-238 829.3 1000 48.1
Haze_17576 Corylus avellana HOM05D004952 ORTHO05D006131 7.1e-235 818.1 844 54.6
PSO339G5893 Papaver somniferum HOM05D004952 ORTHO05D006131 1.0e-233 814.3 860 52.4
Hund10174 Selenicereus undatus HOM05D004952 ORTHO05D006131 9.6e-232 807.7 948 48.7
ECA240G1628 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.1e-227 794.3 1013 48.0
Os12g0606100 Oryza sativa ssp. japonica HOM05D004952 ORTHO05D006131 3.2e-227 792.7 1047 43.9
Os02g0523300 Oryza sativa ssp. japonica HOM05D004952 ORTHO05D006131 1.2e-226 790.8 1047 43.7
FAN20G1371 Fragaria x ananassa HOM05D004952 ORTHO05D006131 2.3e-225 786.6 931 51.3
BolC6t38070H Brassica oleracea HOM05D004952 ORTHO05D006131 1.9e-224 783.5 728 62.0
Dinv39342 Davidia involucrata HOM05D004952 ORTHO05D006131 2.5e-224 783.1 795 54.8
ATR0706G013 Amborella trichopoda HOM05D004952 ORTHO05D006131 8.1e-223 778.1 1059 45.4
Zm00001eb327280 Zea mays HOM05D004952 ORTHO05D006131 1.3e-220 770.8 1038 43.2
Hma1.2p1_0260F.1_g104660 Hydrangea macrophylla HOM05D004952 ORTHO05D006131 1.1e-219 767.7 764 56.4
Cc00_g16150 Coffea canephora HOM05D004952 ORTHO05D006131 1.0e-217 761.1 791 53.4
SHI13748 Sapria himalayana HOM05D004952 ORTHO05D006131 7.4e-216 755.0 1044 44.3
Thecc.10G126500 Theobroma cacao HOM05D004952 ORTHO05D006131 5.3e-214 748.8 880 49.1
SGA_v2.0_scaffold156G37306 Striga asiatica HOM05D004952 ORTHO05D006131 2.2e-180 637.1 1023 40.8
Oeu007037.1 Olea europaea HOM05D004952 ORTHO05D006131 8.8e-177 625.2 980 41.2
HPP92_010073 Vanilla planifolia HOM05D004952 ORTHO05D006131 5.9e-157 559.3 919 39.7
Cc10_g03830 Coffea canephora HOM05D004952 ORTHO05D006131 5.0e-148 529.6 707 43.8
Mapoly0015s0183 Marchantia polymorpha HOM05D004952 ORTHO05D006131 2.5e-147 527.3 1123 33.1
SEGI_10220 Sequoiadendron giganteum HOM05D004952 ORTHO05D006131 5.4e-142 509.6 751 43.1
Pp3c13_8820 Physcomitrium patens HOM05D004952 ORTHO05D006131 1.7e-140 504.6 1151 32.3
unitig_0.g724 Utricularia gibba HOM05D004952 ORTHO05D006131 2.6e-136 490.7 485 54.8
CDE04G1747 Ceratophyllum demersum HOM05D004952 ORTHO05D006131 9.0e-129 465.7 563 47.8
AagrBONN_evm.TU.Sc2ySwM_344.3827 Anthoceros agrestis HOM05D004952 ORTHO05D006131 1.4e-126 458.4 1037 32.5
Potri.016G000100 Populus trichocarpa HOM05D004952 ORTHO05D006131 1.5e-120 438.3 592 44.1
SEGI_19344 Sequoiadendron giganteum HOM05D004952 ORTHO05D006131 9.0e-113 412.5 818 35.5
CSS0028060 Camellia sinensis var. sinensis HOM05D004952 ORTHO05D006131 3.3e-107 394.0 298 70.5
Cc00_g35230 Coffea canephora HOM05D004952 ORTHO05D006131 2.8e-106 391.0 369 57.7
Cc00_g35300 Coffea canephora HOM05D004952 ORTHO05D006131 3.1e-105 387.5 349 60.2
C06p29070 Brassica napus HOM05D002649 ORTHO05D002838 7.1e-102 376.3 722 38.4
CSS0048180 Camellia sinensis var. sinensis HOM05D004952 ORTHO05D006131 1.8e-97 361.7 563 40.9
Potri.014G184701 Populus trichocarpa HOM05D004952 ORTHO05D006131 1.1e-91 342.4 203 81.8
CBR_g22067 Chara braunii HOM05D004952 ORTHO05D006131 1.3e-90 339.0 527 41.4
Potri.014G184801 Populus trichocarpa HOM05D004952 ORTHO05D006131 1.4e-81 308.9 294 57.5
SEGI_10713 Sequoiadendron giganteum HOM05D004952 ORTHO05D006131 5.2e-60 237.3 173 67.1
Actinidia22602 Actinidia chinensis HOM05D004952 ORTHO05D006131 2.3e-55 221.9 135 82.2
Prupe.1G390100 Prunus persica HOM05D004952 ORTHO05D006131 5.8e-43 180.6 148 64.9
SEGI_09331 Sequoiadendron giganteum HOM05D004952 ORTHO05D006131 4.7e-37 161.0 279 36.2
unitig_0.g725 Utricularia gibba HOM05D004952 ORTHO05D006131 1.1e-36 159.8 249 38.6
Glyma.04G036460 Glycine max HOM05D004952 ORTHO05D006131 9.5e-30 136.7 85 78.8
Glyma.04G036420 Glycine max HOM05D004952 ORTHO05D006131 1.3e-26 126.3 89 67.4
Glyma.04G036340 Glycine max HOM05D004952 ORTHO05D006131 1.9e-25 122.5 164 42.7
MCO11G910 Micromonas commoda HOM05D004952 ORTHO05D006131 5.6e-22 110.9 419 24.8
CDE06G0077 Ceratophyllum demersum HOM05D004952 ORTHO05D006131 2.6e-19 102.1 125 48.0
BcaB05g23764 Brassica carinata HOM05D004952 ORTHO05D006131 7.6e-19 100.5 61 86.9
Glyma.04G036380 Glycine max HOM05D004952 ORTHO05D006131 2.7e-16 92.0 101 49.5
Carub.0005s2407 Capsella rubella HOM05D004952 ORTHO05D006131 3.9e-15 88.2 96 54.2
C06p29060 Brassica napus HOM05D004952 ORTHO05D006131 6.6e-15 87.4 77 55.8
BolC6t38069H Brassica oleracea HOM05D004952 ORTHO05D006131 6.6e-15 87.4 77 55.8
Ah.16g107230 Amaranthus hybridus HOM05D004952 ORTHO05D006131 7.3e-14 84.0 92 48.9
SGA_v2.0_scaffold5008G54579 Striga asiatica HOM05D004952 ORTHO05D006131 6.2e-13 80.9 108 48.1
MELO3C010311.2 Cucumis melo HOM05D004952 ORTHO05D006131 4.9e-10 71.2 51 66.7
MBI13_g43601_MAGBIO Magnolia biondii HOM05D004952 ORTHO05D018024 1.1e-09 70.1 64 50.0
Carub.0005s0933 Capsella rubella HOM05D004148 ORTHO05D004709 7.1e-09 67.4 165 31.5
Carub.0005s0948 Capsella rubella HOM05D004148 ORTHO05D004709 7.1e-09 67.4 165 31.5
Lalb_Chr23g0266901 Lupinus albus HOM05D004952 ORTHO05D006131 9.3e-09 67.0 43 72.1
MBI03_g03594_MAGBIO Magnolia biondii HOM05D003757 ORTHO05D018024 9.3e-09 67.0 84 41.7
CBR_g19823 Chara braunii HOM05D004952 ORTHO05D000937 1.3e-07 63.2 99 36.4
BcaB01g00875 Brassica carinata HOM05D004148 ORTHO05D004709 3.0e-07 62.0 184 27.7
Pp3c26_7850 Physcomitrium patens HOM05D004952 ORTHO05D006131 3.9e-07 61.6 161 28.6
MBI16_g19924_MAGBIO Magnolia biondii HOM05D004952 ORTHO05D006131 6.6e-07 60.8 55 56.4
Glyma.03G090100 Glycine max HOM05D005083 ORTHO05D006310 1.1e-06 60.1 328 23.2
MCO10G199 Micromonas commoda HOM05D005083 ORTHO05D006310 1.1e-06 60.1 263 23.2
Solyc11g071570.3 Solanum lycopersicum HOM05D004148 ORTHO05D004709 1.5e-06 59.7 227 26.4
AUR62020189 Chenopodium quinoa HOM05D004148 ORTHO05D004709 3.3e-06 58.5 232 26.3
Manes.13G001400 Manihot esculenta HOM05D005083 ORTHO05D006310 3.3e-06 58.5 275 22.9
Cre10.g430900 Chlamydomonas reinhardtii HOM05D004952 ORTHO05D006131 5.6e-06 57.8 155 24.5
SalBow6G3333 Salvia bowleyana HOM05D004148 ORTHO05D004709 7.3e-06 57.4 241 27.4
CANSAT54G2785 Cannabis sativa HOM05D004148 ORTHO05D004709 9.6e-06 57.0 232 26.3


User provided reference genes

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