Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG4G5060 Aethionema arabicum HOM05D006217 ORTHO05D008480 4.7e-203 712.2 860 100.0
Thhalv10018112m.g Eutrema salsugineum HOM05D006217 ORTHO05D008480 4.0e-178 629.4 866 94.9
Carub.0002s2163 Capsella rubella HOM05D006217 ORTHO05D008480 1.3e-176 624.4 868 94.4
AL2G34730 Arabidopsis lyrata HOM05D006217 ORTHO05D008480 2.1e-174 617.1 866 94.2
Sp5g29980 Schrenkiella parvula HOM05D006217 ORTHO05D008480 1.3e-173 614.4 866 94.1
AT1G74850 Arabidopsis thaliana HOM05D006217 ORTHO05D008480 5.1e-173 612.5 866 94.1
BcaC08g46950 Brassica carinata HOM05D006217 ORTHO05D008480 3.1e-170 603.2 866 93.4
BraA07t31592Z Brassica rapa HOM05D006217 ORTHO05D008480 3.4e-169 599.7 868 93.1
A07p40490 Brassica napus HOM05D006217 ORTHO05D008480 2.2e-168 597.0 868 93.0
C06p48860 Brassica napus HOM05D006217 ORTHO05D008480 5.0e-168 595.9 867 93.0
BolC6t39922H Brassica oleracea HOM05D006217 ORTHO05D008480 5.0e-168 595.9 867 93.0
BcaC08g46912 Brassica carinata HOM05D006217 ORTHO05D008480 3.2e-167 593.2 866 78.5
THA.LOC104809230 Tarenaya hassleriana HOM05D006217 ORTHO05D008480 3.4e-153 546.6 865 90.4
BcaC08g46908 Brassica carinata HOM05D006217 ORTHO05D008480 9.4e-151 538.5 866 79.2
Cpa.g.sc35.13 Carica papaya HOM05D006217 ORTHO05D008480 2.5e-127 460.7 868 83.5
CANSAT80G1888 Cannabis sativa HOM05D006217 ORTHO05D008480 1.4e-122 444.9 846 83.0
MD14G1189200 Malus domestica HOM05D006217 ORTHO05D008480 1.0e-120 438.7 795 83.0
CiPaw.11G034100 Carya illinoinensis HOM05D006217 ORTHO05D008480 1.3e-120 438.3 868 82.7
Eucgr.K02896 Eucalyptus grandis HOM05D006217 ORTHO05D008480 2.9e-120 437.2 861 75.7
FvH4_5g16180 Fragaria vesca HOM05D006217 ORTHO05D008480 2.9e-120 437.2 830 76.9
MD06G1183200 Malus domestica HOM05D006217 ORTHO05D008480 3.3e-119 433.7 833 77.0
RcHm_v2.0_Chr7g0179951 Rosa chinensis HOM05D006217 ORTHO05D008480 3.3e-119 433.7 837 76.0
Manes.06G099200 Manihot esculenta HOM05D006217 ORTHO05D008480 9.5e-119 432.2 810 83.1
Prupe.5G181900 Prunus persica HOM05D006217 ORTHO05D008480 9.5e-119 432.2 835 76.0
PGR044G0185 Punica granatum HOM05D006217 ORTHO05D008480 2.1e-118 431.0 860 79.9
Duzib205G0682 Durio zibethinus HOM05D006217 ORTHO05D008480 3.0e-117 427.2 789 87.7
Hma1.2p1_0572F.1_g181090 Hydrangea macrophylla HOM05D006217 ORTHO05D008480 3.0e-117 427.2 797 84.3
CSS0020542 Camellia sinensis var. sinensis HOM05D006217 ORTHO05D008480 5.2e-117 426.4 864 75.0
QL10p013967 Quercus lobata HOM05D006217 ORTHO05D008480 1.2e-116 425.2 814 86.2
Lalb_Chr12g0201281 Lupinus albus HOM05D006217 ORTHO05D008480 3.4e-116 423.7 836 79.3
Sabra15G0093400 Salix brachista HOM05D006217 ORTHO05D008480 4.4e-116 423.3 837 83.0
TWI15G0191 Tripterygium wilfordii HOM05D006217 ORTHO05D008480 6.4e-115 419.5 838 84.2
COL.COLO4_26823 Corchorus olitorius HOM05D006217 ORTHO05D008480 1.4e-114 418.3 789 86.4
ClCG01G014190 Citrullus lanatus HOM05D006217 ORTHO05D008480 2.4e-114 417.5 831 84.5
Potri.015G069100 Populus trichocarpa HOM05D006217 ORTHO05D008480 4.1e-114 416.8 806 85.6
CsaV3_1G008120 Cucumis sativus L. HOM05D006217 ORTHO05D008480 1.6e-113 414.8 831 80.9
Gohir.D12G277600 Gossypium hirsutum HOM05D006217 ORTHO05D008480 2.0e-113 414.5 829 82.0
Lj4g0005624 Lotus japonicus HOM05D006217 ORTHO05D008480 2.7e-113 414.1 792 84.5
Gohir.A12G276600 Gossypium hirsutum HOM05D006217 ORTHO05D008480 4.6e-113 413.3 829 82.0
Gorai.008G298300 Gossypium raimondii HOM05D006217 ORTHO05D008480 1.7e-112 411.4 830 81.2
Ciclev10018817m.g Citrus clementina HOM05D006217 ORTHO05D008480 1.1e-111 408.7 850 79.1
Nn4g22966 Nelumbo nucifera HOM05D006217 ORTHO05D008480 1.1e-111 408.7 825 75.5
TPR.G38418 Trifolium pratense HOM05D006217 ORTHO05D008480 1.1e-111 408.7 837 78.3
Medtr4g107210 Medicago truncatula HOM05D006217 ORTHO05D008480 4.3e-111 406.8 800 83.4
Ca_21873_v3 Cicer arietinum L. HOM05D006217 ORTHO05D008480 9.5e-111 405.6 803 80.6
MELO3C002229.2 Cucumis melo HOM05D006217 ORTHO05D008480 9.5e-111 405.6 831 75.7
Psat4g055880 Pisum sativum HOM05D006217 ORTHO05D008480 1.6e-110 404.8 802 76.9
TAR622G0668 Trochodendron aralioides HOM05D006217 ORTHO05D008480 3.6e-110 403.7 822 83.5
Haze_07417 Corylus avellana HOM05D006217 ORTHO05D008480 1.8e-109 401.4 835 83.0
Dinv13121 Davidia involucrata HOM05D006217 ORTHO05D008480 3.1e-109 400.6 791 86.2
CSS0050348 Camellia sinensis var. sinensis HOM05D006217 ORTHO05D008480 4.0e-109 400.2 825 74.7
arahy.Tifrunner.gnm1.ann1.KCM1HB Arachis hypogaea HOM05D006217 ORTHO05D008480 2.0e-108 397.9 776 84.4
CAN.G853.39 Capsicum annuum HOM05D006217 ORTHO05D008480 2.6e-108 397.5 859 76.9
arahy.Tifrunner.gnm1.ann1.C8Z94U Arachis hypogaea HOM05D006217 ORTHO05D008480 1.3e-107 395.2 776 84.1
CSS0026115 Camellia sinensis var. sinensis HOM05D006217 ORTHO05D008480 2.9e-107 394.0 825 74.7
Peaxi162Scf00017g02228 Petunia axillaris HOM05D006217 ORTHO05D008480 2.9e-107 394.0 859 77.5
PGSC0003DMG400024573 Solanum tuberosum HOM05D006217 ORTHO05D008480 2.9e-107 394.0 859 76.4
Glyma.17G094300 Glycine max HOM05D006217 ORTHO05D008480 3.7e-107 393.7 787 85.6
Glyma.05G032300 Glycine max HOM05D006217 ORTHO05D008480 1.1e-106 392.1 788 83.8
Atru.BG.200.p Acer truncatum HOM05D006217 ORTHO05D008480 2.4e-106 391.0 775 73.3
Aqoxy3G03170 Aquilegia oxysepala HOM05D006217 ORTHO05D008480 4.1e-106 390.2 811 75.7
CARHR068160 Cardamine hirsuta HOM05D006217 ORTHO05D008480 9.2e-106 389.0 238 84.9
Sopen03g032670 Solanum pennellii HOM05D006217 ORTHO05D008480 9.2e-106 389.0 859 76.0
PSO832G0921 Papaver somniferum HOM05D006217 ORTHO05D008480 1.2e-105 388.7 791 85.2
PSO591G0410 Papaver somniferum HOM05D006217 ORTHO05D008480 2.1e-105 387.9 790 85.1
Solyc03g113630.3 Solanum lycopersicum HOM05D006217 ORTHO05D008480 3.9e-104 383.6 859 75.9
DCAR_016511 Daucus carota HOM05D006217 ORTHO05D008480 2.5e-103 380.9 830 73.7
vmacro19344 Vaccinium macrocarpon HOM05D006217 ORTHO05D008480 9.5e-103 379.0 876 60.7
MSTRG.23079 Avicennia marina HOM05D006217 ORTHO05D008480 6.2e-102 376.3 790 82.4
Sc12g0005700 Simmondsia chinensis HOM05D006217 ORTHO05D008480 4.0e-101 373.6 819 74.7
Migut.I00075 Erythranthe guttata HOM05D006217 ORTHO05D008480 5.2e-101 373.2 859 77.5
Phvul.003G195800 Phaseolus vulgaris HOM05D006217 ORTHO05D008480 2.6e-100 370.9 769 83.0
AUR62008306 Chenopodium quinoa HOM05D006217 ORTHO05D008480 7.5e-100 369.4 798 81.5
AUR62021789 Chenopodium quinoa HOM05D006217 ORTHO05D008480 1.7e-99 368.2 798 82.2
Lj9C455T7 Lonicera japonica HOM05D006217 ORTHO05D008480 5.4e-98 363.2 910 59.0
Rhsim08G0164000 Rhododendron simsii HOM05D006217 ORTHO05D008480 9.2e-98 362.5 857 76.8
EL10Ac5g10869 Beta vulgaris HOM05D006217 ORTHO05D008480 1.3e-96 358.6 847 79.7
SalBow5G1548 Salvia bowleyana HOM05D006217 ORTHO05D008480 3.0e-96 357.5 815 81.2
ECA232G4291 Erigeron canadensis HOM05D006217 ORTHO05D008480 1.9e-95 354.8 786 81.6
HanXRQChr16g0503451 Helianthus annuus HOM05D006217 ORTHO05D008480 2.5e-95 354.4 779 84.0
ATR0681G229 Amborella trichopoda HOM05D006217 ORTHO05D008480 6.2e-94 349.7 850 72.7
CARHR068170 Cardamine hirsuta HOM05D006217 ORTHO05D008480 2.4e-93 347.8 272 93.4
Lsat_1_v5_gn_4_74540 Lactuca sativa HOM05D006217 ORTHO05D008480 1.3e-91 342.0 783 84.0
MBI15_g21026_MAGBIO Magnolia biondii HOM05D006217 ORTHO05D008480 1.9e-90 338.2 789 78.2
SGA_v2.0_scaffold56G20089 Striga asiatica HOM05D006217 ORTHO05D008480 5.4e-90 336.7 866 77.0
Actinidia04949 Actinidia chinensis HOM05D006217 ORTHO05D008480 6.9e-85 319.7 808 71.9
Hund02699 Selenicereus undatus HOM05D006217 ORTHO05D008480 3.4e-84 317.4 864 70.1
Sed0019903 Sechium edule HOM05D006217 ORTHO05D008480 1.3e-80 305.4 706 90.1
CDE10G0083 Ceratophyllum demersum HOM05D006217 ORTHO05D008480 3.9e-80 303.9 780 77.2
CDE10G0055 Ceratophyllum demersum HOM05D006217 ORTHO05D008480 1.5e-79 302.0 780 77.1
GSVIVG01007844001 Vitis vinifera HOM05D006217 ORTHO05D008480 2.8e-78 297.7 217 69.1
Cc04_g16120 Coffea canephora HOM05D006217 ORTHO05D008480 4.5e-76 290.4 247 63.6
VMungo1215G1148 Vigna mungo HOM05D006217 ORTHO05D008480 9.3e-74 282.7 217 65.0
SEGI_07964 Sequoiadendron giganteum HOM05D006217 ORTHO05D008480 2.7e-73 281.2 814 71.9
HPP92_019917 Vanilla planifolia HOM05D006217 ORTHO05D008480 3.0e-72 277.7 774 76.5
FAN04G0516 Fragaria x ananassa HOM05D006217 ORTHO05D008480 3.9e-72 277.3 265 84.5
Ah.11g046350 Amaranthus hybridus HOM05D006217 ORTHO05D008480 1.5e-71 275.4 674 81.0
FAN18G2370 Fragaria x ananassa HOM05D006217 ORTHO05D008480 1.6e-70 271.9 265 83.0
FAN13G2523 Fragaria x ananassa HOM05D006217 ORTHO05D008480 3.7e-70 270.8 265 83.4
FAN08G1390 Fragaria x ananassa HOM05D006217 ORTHO05D008480 6.2e-70 270.0 267 83.1
Thecc.03G001400 Theobroma cacao HOM05D006217 ORTHO05D008480 2.6e-68 264.6 270 81.1
Hma1.2p1_0572F.1_g181080 Hydrangea macrophylla HOM05D006217 ORTHO05D008480 3.2e-66 257.7 268 77.6
unitig_750.g28482 Utricularia gibba HOM05D006217 ORTHO05D008480 1.3e-64 252.3 200 63.5
Os03g0824100 Oryza sativa ssp. japonica HOM05D006217 ORTHO05D008480 8.2e-62 243.0 778 55.5
VMungo1215G2521 Vigna mungo HOM05D006217 ORTHO05D008480 1.3e-59 235.7 219 88.1
Zm00001eb331750 Zea mays HOM05D006217 ORTHO05D008480 4.2e-58 230.7 216 54.6
SEGI_32227 Sequoiadendron giganteum HOM05D006217 ORTHO05D008480 1.8e-53 215.3 210 53.8
Mapoly0003s0152 Marchantia polymorpha HOM05D006217 ORTHO05D008480 1.2e-52 212.6 795 73.8
unitig_750.g28484 Utricularia gibba HOM05D006217 ORTHO05D008480 1.7e-51 208.8 184 80.4
AagrBONN_evm.TU.Sc2ySwM_362.2637 Anthoceros agrestis HOM05D006217 ORTHO05D008480 2.9e-43 181.4 795 73.1
SMO353G0114 Selaginella moellendorffii HOM05D006217 ORTHO05D008480 7.2e-42 176.8 168 73.8
ECA232G0106 Erigeron canadensis HOM05D006217 ORTHO05D008480 4.7e-41 174.1 209 46.9
Pp3c11_11830 Physcomitrium patens HOM05D006217 ORTHO05D008480 1.5e-39 169.1 813 70.4
CBR_g63077 Chara braunii HOM05D006217 ORTHO05D008480 6.3e-38 163.7 205 69.3
AUR62021792 Chenopodium quinoa HOM05D006217 ORTHO05D008480 4.2e-18 97.8 142 88.7
Pp3c4_4900 Physcomitrium patens HOM05D006217 ORTHO05D005119 1.2e-15 89.7 178 30.9
CBR_g9159 Chara braunii HOM05D004127 ORTHO05D005119 1.7e-14 85.9 181 31.5
Lsat_1_v5_gn_3_59501 Lactuca sativa HOM05D001195 ORTHO05D001138 1.2e-12 79.7 48 72.9
FvH4_5g08849 Fragaria vesca HOM05D006217 ORTHO05D008480 1.0e-11 76.6 56 58.9
AagrBONN_evm.TU.Sc2ySwM_117.2521 Anthoceros agrestis HOM05D004127 ORTHO05D005119 1.1e-10 73.2 147 30.6
Pp3c6_15900 Physcomitrium patens HOM05D004127 ORTHO05D005119 2.5e-10 72.0 148 28.4
CBR_g41643 Chara braunii HOM05D005862 ORTHO05D007731 5.5e-10 70.9 127 34.6
CBR_g10873 Chara braunii HOM05D006217 ORTHO05D023528 1.6e-09 69.3 116 31.0
Mapoly0036s0086 Marchantia polymorpha HOM05D004127 ORTHO05D005119 1.6e-09 69.3 147 28.6
Mapoly0154s0039 Marchantia polymorpha HOM05D004127 ORTHO05D005119 1.6e-09 69.3 142 33.1
Dinv02652 Davidia involucrata HOM05D006217 ORTHO05D008480 1.0e-08 66.6 69 53.6
Ah.02g112420 Amaranthus hybridus HOM05D004127 ORTHO05D005119 5.2e-08 64.3 155 29.0
RcHm_v2.0_Chr3g0487361 Rosa chinensis HOM05D004127 ORTHO05D005119 8.9e-08 63.5 149 27.5
Sed0017741 Sechium edule HOM05D006217 ORTHO05D011532 1.2e-07 63.2 113 35.4
CBR_g31210 Chara braunii HOM05D004127 ORTHO05D005119 1.5e-07 62.8 169 28.4
FvH4_1g27040 Fragaria vesca HOM05D004127 ORTHO05D005119 2.0e-07 62.4 111 28.8
FAN19G1378 Fragaria x ananassa HOM05D004127 ORTHO05D005119 2.0e-07 62.4 111 28.8
FAN23G1564 Fragaria x ananassa HOM05D004127 ORTHO05D005119 2.0e-07 62.4 111 28.8
FAN26G0855 Fragaria x ananassa HOM05D004127 ORTHO05D005119 2.0e-07 62.4 111 28.8
FAN28G2982 Fragaria x ananassa HOM05D004127 ORTHO05D005119 2.0e-07 62.4 111 28.8
Pp3c14_15490 Physcomitrium patens HOM05D004127 ORTHO05D005119 2.0e-07 62.4 164 29.9
EL10As5g23557 Beta vulgaris HOM05D004127 ORTHO05D005119 2.6e-07 62.0 155 28.4
Gohir.A12G123700 Gossypium hirsutum HOM05D004127 ORTHO05D005119 2.6e-07 62.0 150 28.7
PGR083G1839 Punica granatum HOM05D004127 ORTHO05D005119 2.6e-07 62.0 151 27.8
Glyma.09G013400 Glycine max HOM05D002244 ORTHO05D002269 3.4e-07 61.6 137 24.8
CBR_g31394 Chara braunii HOM05D004127 ORTHO05D005119 4.4e-07 61.2 143 28.0
Mapoly0063s0054 Marchantia polymorpha HOM05D003056 ORTHO05D003422 5.7e-07 60.8 100 33.0
PSO170G0800 Papaver somniferum HOM05D004127 ORTHO05D005119 5.7e-07 60.8 174 25.9
Prupe.3G010400 Prunus persica HOM05D004127 ORTHO05D005119 7.5e-07 60.5 153 27.5
THA.LOC104809612 Tarenaya hassleriana HOM05D004127 ORTHO05D005119 7.5e-07 60.5 111 27.9
PSO357G0209 Papaver somniferum HOM05D004127 ORTHO05D005119 9.8e-07 60.1 174 25.9
CBR_g1024 Chara braunii HOM05D010152 ORTHO05D007668 1.3e-06 59.7 78 35.9
GSVIVG01028141001 Vitis vinifera HOM05D004127 ORTHO05D005119 1.3e-06 59.7 114 28.1
ATR0693G036 Amborella trichopoda HOM05D004127 ORTHO05D005119 1.7e-06 59.3 147 26.5
AagrBONN_evm.TU.Sc2ySwM_117.1008 Anthoceros agrestis HOM05D006414 ORTHO05D007780 1.7e-06 59.3 81 35.8
Gohir.D12G127400 Gossypium hirsutum HOM05D004127 ORTHO05D005119 1.7e-06 59.3 150 28.0
Gorai.008G138300 Gossypium raimondii HOM05D004127 ORTHO05D005119 1.7e-06 59.3 150 28.0
MD09G1284400 Malus domestica HOM05D004127 ORTHO05D005119 1.7e-06 59.3 153 26.8
Sed0018206 Sechium edule HOM05D004127 ORTHO05D005119 1.7e-06 59.3 111 29.7
Manes.01G229400 Manihot esculenta HOM05D004127 ORTHO05D005119 2.2e-06 58.9 147 27.2
THA.LOC104819204 Tarenaya hassleriana HOM05D004127 ORTHO05D005119 2.2e-06 58.9 114 28.9
Actinidia17915 Actinidia chinensis HOM05D004127 ORTHO05D005119 2.8e-06 58.5 150 26.0
Glyma.15G118200 Glycine max HOM05D002244 ORTHO05D002269 2.8e-06 58.5 133 24.8
MBI18_g03637_MAGBIO Magnolia biondii HOM05D004127 ORTHO05D005119 4.9e-06 57.8 145 26.2
Potri.014G118500 Populus trichocarpa HOM05D004127 ORTHO05D005119 4.9e-06 57.8 150 26.7
Aa31LG1G8250 Aethionema arabicum HOM05D004127 ORTHO05D005119 6.3e-06 57.4 114 28.9
MSTRG.18089 Avicennia marina HOM05D004127 ORTHO05D005119 6.3e-06 57.4 115 27.0
CiPaw.07G119200 Carya illinoinensis HOM05D004127 ORTHO05D005119 6.3e-06 57.4 195 24.6
QL12p019388 Quercus lobata HOM05D004127 ORTHO05D005119 6.3e-06 57.4 150 26.7
ECA247G3842 Erigeron canadensis HOM05D004127 ORTHO05D005119 8.3e-06 57.0 147 27.9
Thecc.01G315900 Theobroma cacao HOM05D004127 ORTHO05D005119 8.3e-06 57.0 114 28.9


User provided reference genes

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