Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG4G1950 Aethionema arabicum HOM05D004382 ORTHO05D005181 5.5e-72 274.2 142 100.0
Sp5g34090 Schrenkiella parvula HOM05D004382 ORTHO05D005181 3.4e-66 255.0 142 91.5
BcaB05g25168 Brassica carinata HOM05D004382 ORTHO05D005181 7.6e-66 253.8 142 92.3
BcaB02g07194 Brassica carinata HOM05D004382 ORTHO05D005181 3.8e-65 251.5 142 90.8
A07p27340 Brassica napus HOM05D004382 ORTHO05D005181 3.8e-65 251.5 142 90.8
BraA07t30375Z Brassica rapa HOM05D004382 ORTHO05D005181 3.8e-65 251.5 142 90.8
Thhalv10019302m.g Eutrema salsugineum HOM05D004382 ORTHO05D005181 8.4e-65 250.4 142 89.4
BcaC08g45389 Brassica carinata HOM05D004382 ORTHO05D005181 1.1e-64 250.0 142 90.8
BcaB02g08662 Brassica carinata HOM05D004382 ORTHO05D005181 3.2e-64 248.4 142 91.5
C06p30200 Brassica napus HOM05D004382 ORTHO05D005181 7.1e-64 247.3 142 90.1
BolC6t38183H Brassica oleracea HOM05D004382 ORTHO05D005181 7.1e-64 247.3 142 90.1
BcaC03g15860 Brassica carinata HOM05D004382 ORTHO05D005181 2.7e-63 245.4 142 90.1
A02p22470 Brassica napus HOM05D004382 ORTHO05D005181 2.7e-63 245.4 142 90.1
C02p36150 Brassica napus HOM05D004382 ORTHO05D005181 2.7e-63 245.4 142 90.1
BolC2t09629H Brassica oleracea HOM05D004382 ORTHO05D005181 2.7e-63 245.4 142 90.1
BraA02t07252Z Brassica rapa HOM05D004382 ORTHO05D005181 2.7e-63 245.4 142 90.1
BcaC08g47468 Brassica carinata HOM05D004382 ORTHO05D005181 3.5e-63 245.0 142 89.4
C06p52920 Brassica napus HOM05D004382 ORTHO05D005181 3.5e-63 245.0 142 89.4
BolC6t40310H Brassica oleracea HOM05D004382 ORTHO05D005181 3.5e-63 245.0 142 89.4
A07p44190 Brassica napus HOM05D004382 ORTHO05D005181 4.6e-63 244.6 142 89.4
BraA07t31927Z Brassica rapa HOM05D004382 ORTHO05D005181 4.6e-63 244.6 142 89.4
AT1G79040 Arabidopsis thaliana HOM05D004382 ORTHO05D005181 5.1e-62 241.1 142 88.0
CARHR072720 Cardamine hirsuta HOM05D004382 ORTHO05D005181 8.7e-62 240.4 142 88.0
Carub.0002s2591 Capsella rubella HOM05D004382 ORTHO05D005181 1.1e-61 240.0 142 87.3
AL2G39500 Arabidopsis lyrata HOM05D004382 ORTHO05D005181 4.5e-58 228.0 134 87.3
arahy.Tifrunner.gnm1.ann1.HCTL36 Arachis hypogaea HOM05D004382 ORTHO05D005181 3.6e-55 218.4 142 79.6
Gohir.A04G050200 Gossypium hirsutum HOM05D004382 ORTHO05D005181 3.6e-55 218.4 142 81.0
arahy.Tifrunner.gnm1.ann1.9QX17Y Arachis hypogaea HOM05D004382 ORTHO05D005181 4.6e-55 218.0 142 79.6
Gohir.D05G330700 Gossypium hirsutum HOM05D004382 ORTHO05D005181 7.9e-55 217.2 142 81.0
Gorai.009G354500 Gossypium raimondii HOM05D004382 ORTHO05D005181 7.9e-55 217.2 142 81.0
Lalb_Chr01g0015971 Lupinus albus HOM05D004382 ORTHO05D005181 8.7e-54 213.8 137 81.0
Ciclev10022793m.g Citrus clementina HOM05D004382 ORTHO05D005181 1.1e-53 213.4 142 80.3
Nitab4.5_0000134g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 1.5e-53 213.0 142 76.1
CANSAT56G1367 Cannabis sativa HOM05D004382 ORTHO05D005181 1.9e-53 212.6 142 80.3
Sed0014118 Sechium edule HOM05D004382 ORTHO05D005181 2.5e-53 212.2 142 81.7
VMungo1080G1647 Vigna mungo HOM05D004382 ORTHO05D005181 4.3e-53 211.5 142 78.2
Glyma.08G173700 Glycine max HOM05D004382 ORTHO05D005181 5.7e-53 211.1 142 78.9
Solyc07g066310.3 Solanum lycopersicum HOM05D004382 ORTHO05D005181 5.7e-53 211.1 140 78.6
Sopen07g034490 Solanum pennellii HOM05D004382 ORTHO05D005181 5.7e-53 211.1 140 78.6
Nitab4.5_0002475g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 7.4e-53 210.7 140 76.4
Phvul.005G055200 Phaseolus vulgaris HOM05D004382 ORTHO05D005181 9.7e-53 210.3 142 78.2
CsaV3_4G007600 Cucumis sativus L. HOM05D004382 ORTHO05D005181 1.3e-52 209.9 142 80.3
ClCG07G010700 Citrullus lanatus HOM05D004382 ORTHO05D005181 1.6e-52 209.5 142 80.3
TWI38G0568 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 2.2e-52 209.1 143 76.2
MSTRG.7052 Avicennia marina HOM05D004382 ORTHO05D005181 2.8e-52 208.8 142 74.6
MD05G1215200 Malus domestica HOM05D004382 ORTHO05D005181 2.8e-52 208.8 142 75.4
TWI38G0625 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 2.8e-52 208.8 143 75.5
Sed0025739 Sechium edule HOM05D004382 ORTHO05D005181 4.8e-52 208.0 142 79.6
PGSC0003DMG400022241 Solanum tuberosum HOM05D004382 ORTHO05D005181 6.3e-52 207.6 140 77.1
SGA_v2.0_scaffold49G18168 Striga asiatica HOM05D004382 ORTHO05D005181 6.3e-52 207.6 140 75.7
Peaxi162Scf00006g00149 Petunia axillaris HOM05D004382 ORTHO05D005181 1.1e-51 206.8 140 75.0
Glyma.15G253700 Glycine max HOM05D004382 ORTHO05D005181 1.8e-51 206.1 142 78.2
Sabra11G0127600 Salix brachista HOM05D004382 ORTHO05D005181 1.8e-51 206.1 142 77.5
Cc05_g15930 Coffea canephora HOM05D004382 ORTHO05D005181 2.4e-51 205.7 140 76.4
COL.COLO4_05073 Corchorus olitorius HOM05D004382 ORTHO05D005181 3.1e-51 205.3 143 76.2
Nitab4.5_0000313g0040 Nicotiana tabacum HOM05D004382 ORTHO05D005181 3.1e-51 205.3 142 75.4
PGR142G2616 Punica granatum HOM05D004382 ORTHO05D005181 4.1e-51 204.9 142 76.1
AUR62004366 Chenopodium quinoa HOM05D004382 ORTHO05D005181 5.3e-51 204.5 143 77.6
Peaxi162Scf00232g01129 Petunia axillaris HOM05D004382 ORTHO05D005181 5.3e-51 204.5 140 75.0
Prupe.4G143700 Prunus persica HOM05D004382 ORTHO05D005181 5.3e-51 204.5 142 77.5
FvH4_3g16050 Fragaria vesca HOM05D004382 ORTHO05D005181 6.9e-51 204.1 142 77.5
FAN11G1612 Fragaria x ananassa HOM05D004382 ORTHO05D005181 6.9e-51 204.1 142 77.5
CSS0001445 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 1.5e-50 203.0 142 75.4
SalBow8G0430 Salvia bowleyana HOM05D004382 ORTHO05D005181 1.5e-50 203.0 142 73.9
MD10G1198300 Malus domestica HOM05D004382 ORTHO05D005181 2.0e-50 202.6 142 74.6
CiPaw.11G067100 Carya illinoinensis HOM05D004382 ORTHO05D005181 2.6e-50 202.2 142 74.6
Lj3g0019499 Lotus japonicus HOM05D004382 ORTHO05D005181 2.6e-50 202.2 142 74.6
Nitab4.5_0001791g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 3.4e-50 201.8 143 74.8
GSVIVG01020484001 Vitis vinifera HOM05D004382 ORTHO05D005181 3.4e-50 201.8 142 75.4
Lalb_Chr25g0285191 Lupinus albus HOM05D004382 ORTHO05D005181 4.5e-50 201.4 136 77.2
Oeu002809.1 Olea europaea HOM05D004382 ORTHO05D005181 4.5e-50 201.4 140 72.9
AUR62022575 Chenopodium quinoa HOM05D004382 ORTHO05D005181 7.7e-50 200.7 143 75.5
CAN.G943.25 Capsicum annuum HOM05D004382 ORTHO05D005181 1.0e-49 200.3 140 77.1
ClCG11G016280 Citrullus lanatus HOM05D004382 ORTHO05D005181 1.3e-49 199.9 142 73.2
FAN25G3309 Fragaria x ananassa HOM05D004382 ORTHO05D005181 1.3e-49 199.9 142 76.1
Potri.001G438700 Populus trichocarpa HOM05D004382 ORTHO05D005181 2.2e-49 199.1 142 74.6
CSS0016237 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 2.9e-49 198.7 139 71.9
unitig_8.g4771 Utricularia gibba HOM05D004382 ORTHO05D005181 2.9e-49 198.7 140 71.4
Hma1.2p1_0193F.1_g084500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 3.8e-49 198.4 142 71.8
THA.LOC104812349 Tarenaya hassleriana HOM05D004382 ORTHO05D005181 3.8e-49 198.4 137 76.6
Oeu003841.1 Olea europaea HOM05D004382 ORTHO05D005181 5.0e-49 198.0 142 73.9
QL04p074767 Quercus lobata HOM05D004382 ORTHO05D005181 5.0e-49 198.0 141 74.5
Potri.011G142200 Populus trichocarpa HOM05D004382 ORTHO05D005181 6.5e-49 197.6 142 74.6
Thecc.07G156900 Theobroma cacao HOM05D004382 ORTHO05D005181 8.5e-49 197.2 142 74.6
Duzib187G1376 Durio zibethinus HOM05D004382 ORTHO05D005181 1.1e-48 196.8 142 74.6
FAN21G1818 Fragaria x ananassa HOM05D004382 ORTHO05D005181 1.4e-48 196.4 142 74.6
Migut.H01700 Erythranthe guttata HOM05D004382 ORTHO05D005181 1.9e-48 196.1 140 70.0
Lalb_Chr03g0031561 Lupinus albus HOM05D004382 ORTHO05D005181 2.5e-48 195.7 145 71.7
Actinidia37109 Actinidia chinensis HOM05D004382 ORTHO05D005181 4.2e-48 194.9 144 73.6
Gorai.002G032900 Gossypium raimondii HOM05D004382 ORTHO05D005181 5.5e-48 194.5 145 73.8
Medtr2g064650 Medicago truncatula HOM05D004382 ORTHO05D005181 5.5e-48 194.5 142 73.9
Potri.001G438800 Populus trichocarpa HOM05D004382 ORTHO05D005181 5.5e-48 194.5 141 72.3
RcHm_v2.0_Chr5g0027021 Rosa chinensis HOM05D004382 ORTHO05D005181 5.5e-48 194.5 142 74.6
SalBow5G1313 Salvia bowleyana HOM05D004382 ORTHO05D005181 9.4e-48 193.7 140 72.9
SalBow5G2519 Salvia bowleyana HOM05D004382 ORTHO05D005181 9.4e-48 193.7 140 72.9
Sc16g0003480 Simmondsia chinensis HOM05D004382 ORTHO05D005181 9.4e-48 193.7 142 73.2
DCAR_013749 Daucus carota HOM05D004382 ORTHO05D005181 1.2e-47 193.4 143 72.7
ECA236G0888 Erigeron canadensis HOM05D004382 ORTHO05D005181 2.1e-47 192.6 142 73.9
Ah.08g216320 Amaranthus hybridus HOM05D004382 ORTHO05D005181 2.7e-47 192.2 142 73.9
TPR.G10344 Trifolium pratense HOM05D004382 ORTHO05D005181 2.7e-47 192.2 142 71.8
MSTRG.14535 Avicennia marina HOM05D004382 ORTHO05D005181 3.6e-47 191.8 142 71.8
Gohir.A01G037100 Gossypium hirsutum HOM05D004382 ORTHO05D005181 7.9e-47 190.7 145 71.7
HanXRQChr08g0232801 Helianthus annuus HOM05D004382 ORTHO05D005181 7.9e-47 190.7 142 73.2
Eucgr.F01447 Eucalyptus grandis HOM05D004382 ORTHO05D005181 1.4e-46 189.9 158 70.9
MBI02_g25371_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 1.8e-46 189.5 142 72.5
HanXRQChr05g0160651 Helianthus annuus HOM05D004382 ORTHO05D005181 2.3e-46 189.1 140 71.4
Ca_03704_v3 Cicer arietinum L. HOM05D004382 ORTHO05D005181 3.9e-46 188.3 142 69.7
Psat1g002320 Pisum sativum HOM05D004382 ORTHO05D005181 3.9e-46 188.3 142 69.7
Manes.15G102500 Manihot esculenta HOM05D004382 ORTHO05D005181 5.1e-46 188.0 144 71.5
Nn3g20146 Nelumbo nucifera HOM05D002089 ORTHO05D011346 5.1e-46 188.0 140 75.0
Atru.chr2.1854 Acer truncatum HOM05D004382 ORTHO05D005181 8.8e-46 187.2 142 72.5
EL10Ac4g08547 Beta vulgaris HOM05D004382 ORTHO05D005181 1.1e-45 186.8 143 72.7
Potri.011G142300 Populus trichocarpa HOM05D004382 ORTHO05D005181 1.1e-45 186.8 140 71.4
Hund10309 Selenicereus undatus HOM05D004382 ORTHO05D005181 1.1e-45 186.8 121 79.3
Rhsim04G0006200 Rhododendron simsii HOM05D004382 ORTHO05D005181 2.0e-45 186.0 140 71.4
vmacro09788 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 4.4e-45 184.9 143 69.9
ATR1098G153 Amborella trichopoda HOM05D004382 ORTHO05D005181 7.4e-45 184.1 143 69.9
DCAR_016816 Daucus carota HOM05D004382 ORTHO05D005181 1.7e-44 183.0 140 69.3
Sed0016780 Sechium edule HOM05D004382 ORTHO05D005181 4.8e-44 181.4 139 71.9
Aqoxy1G01569 Aquilegia oxysepala HOM05D004382 ORTHO05D005181 6.3e-44 181.0 143 69.2
Solyc12g017250.2 Solanum lycopersicum HOM05D004382 ORTHO05D005181 8.2e-44 180.6 138 68.1
Sopen12g008070 Solanum pennellii HOM05D004382 ORTHO05D005181 1.4e-43 179.9 138 68.8
Hma1.2p1_0321F.1_g124500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 1.8e-43 179.5 141 66.7
DCAR_009633 Daucus carota HOM05D004382 ORTHO05D005181 2.6e-42 175.6 143 67.8
TAR627G0744 Trochodendron aralioides HOM05D004382 ORTHO05D005181 4.5e-42 174.9 136 69.9
PSO541G3267 Papaver somniferum HOM05D004382 ORTHO05D005181 1.0e-41 173.7 144 66.0
PSO675G7775 Papaver somniferum HOM05D004382 ORTHO05D005181 1.0e-41 173.7 144 66.0
Manes.03G082900 Manihot esculenta HOM05D004382 ORTHO05D005181 1.3e-41 173.3 143 69.2
CDE04G0985 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 2.2e-41 172.6 142 68.3
CDE12G0390 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 2.2e-41 172.6 142 68.3
HPP92_016563 Vanilla planifolia HOM05D004382 ORTHO05D005181 2.1e-39 166.0 143 65.0
Lsat_1_v5_gn_7_116120 Lactuca sativa HOM05D004382 ORTHO05D005181 7.9e-39 164.1 143 65.0
Os08g0200300 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 1.4e-38 163.3 138 65.2
Eucgr.F03186 Eucalyptus grandis HOM05D004382 ORTHO05D005181 1.8e-38 162.9 112 75.0
CDE11G0376 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 2.3e-38 162.5 140 62.9
Zm00001eb171230 Zea mays HOM05D004382 ORTHO05D005181 3.3e-37 158.7 140 64.3
Os07g0147550 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 1.3e-36 156.8 143 60.8
Sabra16G0296700 Salix brachista HOM05D004382 ORTHO05D005181 1.7e-36 156.4 160 58.1
vmacro11652 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 1.7e-36 156.4 156 60.3
Sabra11G0127700 Salix brachista HOM05D004382 ORTHO05D005181 2.4e-35 152.5 141 61.0
Rhsim06G0237200 Rhododendron simsii HOM05D006828 ORTHO05D008312 7.0e-35 151.0 91 81.3
Dinv19628 Davidia involucrata HOM05D006828 ORTHO05D008312 1.3e-33 146.7 88 80.7
SEGI_14655 Sequoiadendron giganteum HOM05D004382 ORTHO05D005181 1.7e-33 146.4 138 55.8
Gohir.D01G024400 Gossypium hirsutum HOM05D004382 ORTHO05D005181 8.5e-33 144.1 114 68.4
Os07g0147500 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 3.2e-32 142.1 141 57.4
Mapoly0001s0109 Marchantia polymorpha HOM05D004382 ORTHO05D005181 1.6e-31 139.8 146 57.5
SMO134G0197 Selaginella moellendorffii HOM05D004382 ORTHO05D005181 1.8e-30 136.3 121 57.9
PGSC0003DMG400002312 Solanum tuberosum HOM05D004382 ORTHO05D005181 3.0e-30 135.6 144 57.6
MELO3C016181.2 Cucumis melo HOM05D004382 ORTHO05D005181 2.6e-29 132.5 92 80.4
Pp3c27_2340 Physcomitrium patens HOM05D004382 ORTHO05D005181 2.8e-28 129.0 138 52.2
Pp3c5_4230 Physcomitrium patens HOM05D004382 ORTHO05D005181 2.8e-28 129.0 142 53.5
MBI18_g37150_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 4.8e-28 128.3 142 54.9
AagrBONN_evm.TU.Sc2ySwM_228.2640 Anthoceros agrestis HOM05D004382 ORTHO05D005181 2.4e-27 125.9 141 51.1
Cpa.g.c37194 Carica papaya HOM05D004382 ORTHO05D005181 2.4e-27 125.9 92 71.7
Mapoly0006s0055 Marchantia polymorpha HOM05D004382 ORTHO05D005181 7.0e-27 124.4 116 57.8
Pp3c16_5650 Physcomitrium patens HOM05D004382 ORTHO05D005181 7.0e-27 124.4 142 49.3
Pp3c27_2320 Physcomitrium patens HOM05D004382 ORTHO05D005181 5.9e-26 121.3 139 52.5
PGR083G0343 Punica granatum HOM05D004382 ORTHO05D005181 8.0e-23 110.9 92 66.3
PRCOL_00003342 Prasinoderma coloniale HOM05D004382 ORTHO05D005181 8.8e-22 107.5 134 46.3
Cpa.g.c38697 Carica papaya HOM05D004382 ORTHO05D005181 5.4e-19 98.2 53 86.8
Haze_08525 Corylus avellana HOM05D004382 ORTHO05D005181 5.9e-18 94.7 142 44.4
CBR_g30109 Chara braunii HOM05D000004 ORTHO05D000002 7.7e-18 94.4 67 65.7
Cre06.g261000 Chlamydomonas reinhardtii HOM05D004382 ORTHO05D005181 1.7e-17 93.2 135 45.9
Atru.chr6.732 Acer truncatum HOM05D004382 ORTHO05D005181 6.1e-15 84.7 82 59.8
TAR626G0945 Trochodendron aralioides HOM05D004382 ORTHO05D005181 1.8e-11 73.2 88 55.7
TPR.G25891 Trifolium pratense HOM05D004382 ORTHO05D005181 1.4e-06 57.0 32 93.8


User provided reference genes

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