Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG4G16460 Aethionema arabicum HOM05D003823 ORTHO05D004866 7.5e-109 397.1 191 100.0
BcaC01g01774 Brassica carinata HOM05D003823 ORTHO05D004866 5.4e-107 391.0 191 97.4
C03p72020 Brassica napus HOM05D003823 ORTHO05D004866 5.4e-107 391.0 191 97.4
BolC3t19499H Brassica oleracea HOM05D003823 ORTHO05D004866 5.4e-107 391.0 191 97.4
BcaB01g00874 Brassica carinata HOM05D003823 ORTHO05D004866 1.6e-106 389.4 191 96.3
Sp5g14150 Schrenkiella parvula HOM05D003823 ORTHO05D004866 5.9e-106 387.5 191 95.8
A06p27290 Brassica napus HOM05D003823 ORTHO05D004866 1.3e-105 386.3 191 95.3
BraA06t25670Z Brassica rapa HOM05D003823 ORTHO05D004866 1.3e-105 386.3 191 95.3
CARHR156490 Cardamine hirsuta HOM05D003823 ORTHO05D004866 1.7e-105 386.0 191 94.8
Thhalv10010746m.g Eutrema salsugineum HOM05D003823 ORTHO05D004866 1.7e-105 386.0 191 95.3
A06p19840 Brassica napus HOM05D003823 ORTHO05D004866 2.3e-105 385.6 191 95.3
BraA06t25064Z Brassica rapa HOM05D003823 ORTHO05D004866 2.3e-105 385.6 191 95.3
BcaC01g02292 Brassica carinata HOM05D003823 ORTHO05D004866 5.0e-105 384.4 191 95.3
C03p66970 Brassica napus HOM05D003823 ORTHO05D004866 5.0e-105 384.4 191 95.3
BolC3t18970H Brassica oleracea HOM05D003823 ORTHO05D004866 5.0e-105 384.4 191 95.3
AL5G27100 Arabidopsis lyrata HOM05D003823 ORTHO05D004866 1.5e-104 382.9 191 94.2
AT3G47810 Arabidopsis thaliana HOM05D003823 ORTHO05D004866 1.9e-104 382.5 191 94.2
BcaB02g10689 Brassica carinata HOM05D003823 ORTHO05D004866 7.3e-104 380.6 191 94.2
THA.LOC104819434 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 6.8e-102 374.0 189 92.6
Lalb_Chr25g0280071 Lupinus albus HOM05D003823 ORTHO05D004866 1.2e-101 373.2 191 90.6
Carub.0005s1392 Capsella rubella HOM05D003823 ORTHO05D004866 2.6e-101 372.1 181 96.7
Medtr3g080480 Medicago truncatula HOM05D003823 ORTHO05D004866 1.7e-100 369.4 189 90.5
THA.LOC104821437 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 2.2e-100 369.0 189 91.0
PSO017G2864 Papaver somniferum HOM05D003823 ORTHO05D004866 2.9e-100 368.6 189 89.9
Aqoxy3G03322 Aquilegia oxysepala HOM05D003823 ORTHO05D004866 3.7e-100 368.2 188 89.9
Glyma.02G268600 Glycine max HOM05D003823 ORTHO05D004866 4.9e-100 367.9 189 90.5
Gohir.A11G029891 Gossypium hirsutum HOM05D003823 ORTHO05D004866 4.9e-100 367.9 190 91.1
CANSAT80G0583 Cannabis sativa HOM05D003823 ORTHO05D004866 6.4e-100 367.5 190 89.5
Ciclev10022411m.g Citrus clementina HOM05D003823 ORTHO05D004866 6.4e-100 367.5 189 89.9
VMungo0647G1166 Vigna mungo HOM05D003823 ORTHO05D004866 6.4e-100 367.5 189 89.9
Duzib084G0821 Durio zibethinus HOM05D003823 ORTHO05D004866 8.3e-100 367.1 189 90.5
PSO478G3470 Papaver somniferum HOM05D003823 ORTHO05D004866 8.3e-100 367.1 189 89.4
Phvul.008G213700 Phaseolus vulgaris HOM05D003823 ORTHO05D004866 8.3e-100 367.1 189 89.4
ClCG06G016300 Citrullus lanatus HOM05D003823 ORTHO05D004866 1.4e-99 366.3 187 90.4
MELO3C017163.2 Cucumis melo HOM05D003823 ORTHO05D004866 1.4e-99 366.3 187 90.4
CsaV3_1G002230 Cucumis sativus L. HOM05D003823 ORTHO05D004866 1.4e-99 366.3 187 90.4
AUR62027457 Chenopodium quinoa HOM05D003823 ORTHO05D004866 1.9e-99 365.9 188 89.9
AUR62031242 Chenopodium quinoa HOM05D003823 ORTHO05D004866 1.9e-99 365.9 188 89.9
Ca_16285_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 1.9e-99 365.9 189 89.4
FvH4_5g15250 Fragaria vesca HOM05D003823 ORTHO05D004866 2.4e-99 365.5 189 89.4
FAN04G0558 Fragaria x ananassa HOM05D003823 ORTHO05D004866 2.4e-99 365.5 189 89.4
FAN08G0194 Fragaria x ananassa HOM05D003823 ORTHO05D004866 2.4e-99 365.5 189 89.4
FAN13G2005 Fragaria x ananassa HOM05D003823 ORTHO05D004866 2.4e-99 365.5 189 89.4
FAN18G4237 Fragaria x ananassa HOM05D003823 ORTHO05D004866 2.4e-99 365.5 189 89.4
Gohir.D11G033300 Gossypium hirsutum HOM05D003823 ORTHO05D004866 2.4e-99 365.5 190 90.5
Gorai.007G036100 Gossypium raimondii HOM05D003823 ORTHO05D004866 2.4e-99 365.5 190 90.5
Os02g0265400 Oryza sativa ssp. japonica HOM05D003823 ORTHO05D004866 2.4e-99 365.5 185 91.4
Duzib268G0082 Durio zibethinus HOM05D003823 ORTHO05D004866 3.2e-99 365.2 189 87.8
PGR083G1126 Punica granatum HOM05D003823 ORTHO05D004866 3.2e-99 365.2 188 89.4
CiPaw.11G041500 Carya illinoinensis HOM05D003823 ORTHO05D004866 4.1e-99 364.8 187 90.4
MBI02_g36598_MAGBIO Magnolia biondii HOM05D003823 ORTHO05D004866 4.1e-99 364.8 189 88.9
Hund02662 Selenicereus undatus HOM05D003823 ORTHO05D004866 4.1e-99 364.8 190 87.4
GSVIVG01020043001 Vitis vinifera HOM05D003823 ORTHO05D004866 4.1e-99 364.8 189 88.4
Cpa.g.sc388.5 Carica papaya HOM05D003823 ORTHO05D004866 5.4e-99 364.4 189 89.4
Ca_06062_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 5.4e-99 364.4 189 89.4
Ca_30714_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 5.4e-99 364.4 189 89.4
Manes.05G098825 Manihot esculenta HOM05D003823 ORTHO05D004866 5.4e-99 364.4 189 87.8
Oeu022626.1 Olea europaea HOM05D003823 ORTHO05D004866 5.4e-99 364.4 188 87.8
Psat5g111480 Pisum sativum HOM05D003823 ORTHO05D004866 5.4e-99 364.4 189 89.4
Sed0017565 Sechium edule HOM05D003823 ORTHO05D004866 5.4e-99 364.4 185 90.8
TPR.G25673 Trifolium pratense HOM05D003823 ORTHO05D004866 5.4e-99 364.4 189 88.9
PGSC0003DMG400018144 Solanum tuberosum HOM05D003823 ORTHO05D004866 7.0e-99 364.0 188 89.4
Thecc.02G351700 Theobroma cacao HOM05D003823 ORTHO05D004866 7.0e-99 364.0 189 87.3
vmacro18202 Vaccinium macrocarpon HOM05D003823 ORTHO05D004866 7.0e-99 364.0 188 88.3
Cfa018968 Carpinus fangiana HOM05D000046 ORTHO05D004866 9.2e-99 363.6 187 90.4
Atru.chr11.1839 Acer truncatum HOM05D003823 ORTHO05D004866 1.2e-98 363.2 189 87.8
COL.COLO4_22965 Corchorus olitorius HOM05D003823 ORTHO05D004866 1.2e-98 363.2 186 88.7
Glyma.14G048800 Glycine max HOM05D003823 ORTHO05D004866 1.2e-98 363.2 189 89.4
Lj4g0027914 Lotus japonicus HOM05D003823 ORTHO05D004866 1.2e-98 363.2 186 89.8
Sc12g0006240 Simmondsia chinensis HOM05D003823 ORTHO05D004866 1.2e-98 363.2 187 89.3
Psat2g025840 Pisum sativum HOM05D003823 ORTHO05D004866 1.6e-98 362.8 189 88.4
QL10p016165 Quercus lobata HOM05D003823 ORTHO05D004866 1.6e-98 362.8 187 89.8
Manes.14G076100 Manihot esculenta HOM05D003823 ORTHO05D004866 2.0e-98 362.5 187 89.3
SalBow6G5762 Salvia bowleyana HOM05D003823 ORTHO05D004866 2.0e-98 362.5 190 86.8
Gohir.A12G166100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 2.7e-98 362.1 189 87.3
Peaxi162Scf00009g00217 Petunia axillaris HOM05D003823 ORTHO05D004866 2.7e-98 362.1 184 90.8
Prupe.5G189200 Prunus persica HOM05D003823 ORTHO05D004866 2.7e-98 362.1 189 88.4
Solyc03g113020.3 Solanum lycopersicum HOM05D003823 ORTHO05D004866 2.7e-98 362.1 188 88.3
Sopen03g032100 Solanum pennellii HOM05D003823 ORTHO05D004866 2.7e-98 362.1 188 88.3
TAR622G1107 Trochodendron aralioides HOM05D003823 ORTHO05D004866 2.7e-98 362.1 186 89.2
CSS0031728 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 3.5e-98 361.7 187 87.7
CSS0041610 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 3.5e-98 361.7 187 87.7
CSS0049183 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 3.5e-98 361.7 187 87.7
Cc04_g17180 Coffea canephora HOM05D003823 ORTHO05D004866 3.5e-98 361.7 189 87.8
Duzib251G0021 Durio zibethinus HOM05D003823 ORTHO05D004866 3.5e-98 361.7 189 87.8
Medtr5g085380 Medicago truncatula HOM05D003823 ORTHO05D004866 3.5e-98 361.7 189 87.8
Nitab4.5_0000785g0070 Nicotiana tabacum HOM05D003823 ORTHO05D004866 3.5e-98 361.7 188 88.8
Nitab4.5_0010010g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 3.5e-98 361.7 188 88.8
TPR.G29042 Trifolium pratense HOM05D003823 ORTHO05D004866 3.5e-98 361.7 188 89.4
Zm00001eb203950 Zea mays HOM05D003823 ORTHO05D004866 3.5e-98 361.7 185 90.3
Thecc.03G082400 Theobroma cacao HOM05D003823 ORTHO05D004866 4.6e-98 361.3 187 89.3
TAR374G1522 Trochodendron aralioides HOM05D003823 ORTHO05D004866 4.6e-98 361.3 186 89.2
Gohir.D12G169500 Gossypium hirsutum HOM05D003823 ORTHO05D004866 6.0e-98 360.9 188 87.2
RcHm_v2.0_Chr7g0180841 Rosa chinensis HOM05D003823 ORTHO05D004866 6.0e-98 360.9 187 88.8
Nn8g40950 Nelumbo nucifera HOM05D003823 ORTHO05D004866 7.8e-98 360.5 190 88.4
Potri.001G354000 Populus trichocarpa HOM05D003823 ORTHO05D004866 7.8e-98 360.5 187 88.8
TWI60G1055 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 7.8e-98 360.5 187 88.8
TWI81G0804 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 7.8e-98 360.5 187 88.8
MD06G1190100 Malus domestica HOM05D003823 ORTHO05D004866 1.3e-97 359.8 187 88.2
MD14G1197000 Malus domestica HOM05D003823 ORTHO05D004866 1.3e-97 359.8 187 88.2
Actinidia02709 Actinidia chinensis HOM05D003823 ORTHO05D004866 1.7e-97 359.4 188 87.2
ATR0564G299 Amborella trichopoda HOM05D003823 ORTHO05D004866 1.7e-97 359.4 186 89.8
Atru.chr4.927 Acer truncatum HOM05D003823 ORTHO05D004866 2.3e-97 359.0 189 87.3
Actinidia37644 Actinidia chinensis HOM05D003823 ORTHO05D004866 2.3e-97 359.0 189 87.8
Rhsim08G0157700 Rhododendron simsii HOM05D003823 ORTHO05D004866 2.3e-97 359.0 188 87.8
CAN.G1305.7 Capsicum annuum HOM05D003823 ORTHO05D004866 3.0e-97 358.6 188 87.2
Potri.011G077900 Populus trichocarpa HOM05D003823 ORTHO05D004866 3.0e-97 358.6 187 87.7
EL10Ac8g19266 Beta vulgaris HOM05D003823 ORTHO05D004866 3.9e-97 358.2 188 87.8
Nn4g23085 Nelumbo nucifera HOM05D003823 ORTHO05D004866 3.9e-97 358.2 190 87.9
Sabra16G0232900 Salix brachista HOM05D003823 ORTHO05D004866 3.9e-97 358.2 184 89.7
Ciclev10032832m.g Citrus clementina HOM05D003823 ORTHO05D004866 6.6e-97 357.5 189 86.8
Gorai.008G182100 Gossypium raimondii HOM05D003823 ORTHO05D004866 6.6e-97 357.5 188 86.2
Lsat_1_v5_gn_2_88881 Lactuca sativa HOM05D003823 ORTHO05D004866 6.6e-97 357.5 187 87.7
Dinv06526 Davidia involucrata HOM05D003823 ORTHO05D004866 8.6e-97 357.1 188 86.2
Dinv38684 Davidia involucrata HOM05D003823 ORTHO05D004866 1.1e-96 356.7 188 86.7
Migut.D02333 Erythranthe guttata HOM05D003823 ORTHO05D004866 1.1e-96 356.7 184 88.0
Oeu006179.1 Olea europaea HOM05D003823 ORTHO05D004866 1.5e-96 356.3 188 86.7
MSTRG.9636 Avicennia marina HOM05D003823 ORTHO05D004866 3.3e-96 355.1 188 86.2
Cc07_g03190 Coffea canephora HOM05D003823 ORTHO05D004866 3.3e-96 355.1 188 87.2
Eucgr.K02462 Eucalyptus grandis HOM05D003823 ORTHO05D004866 3.3e-96 355.1 208 81.7
HanXRQChr02g0056361 Helianthus annuus HOM05D003823 ORTHO05D004866 3.3e-96 355.1 187 86.6
Rhsim08G0068000 Rhododendron simsii HOM05D003823 ORTHO05D004866 3.3e-96 355.1 200 83.0
Sed0002791 Sechium edule HOM05D003823 ORTHO05D004866 3.3e-96 355.1 187 87.2
DCAR_026066 Daucus carota HOM05D003823 ORTHO05D004866 4.3e-96 354.8 186 88.7
HanXRQChr14g0449901 Helianthus annuus HOM05D003823 ORTHO05D004866 4.3e-96 354.8 187 86.6
ECA238G0538 Erigeron canadensis HOM05D003823 ORTHO05D004866 5.6e-96 354.4 187 85.6
HPP92_020326 Vanilla planifolia HOM05D003823 ORTHO05D004866 5.6e-96 354.4 199 84.4
CDE02G3183 Ceratophyllum demersum HOM05D003823 ORTHO05D004866 1.2e-95 353.2 184 87.5
Migut.D02334 Erythranthe guttata HOM05D003823 ORTHO05D004866 4.7e-95 351.3 186 86.6
Dinv19933 Davidia involucrata HOM05D003823 ORTHO05D004866 1.8e-94 349.4 190 85.8
Zm00001eb237810 Zea mays HOM05D003823 ORTHO05D004866 3.1e-94 348.6 185 86.5
Lj5A113G71 Lonicera japonica HOM05D003823 ORTHO05D004866 4.0e-94 348.2 184 86.4
SMO116G0153 Selaginella moellendorffii HOM05D003823 ORTHO05D004866 2.9e-92 342.0 189 83.6
Mapoly0081s0078 Marchantia polymorpha HOM05D003823 ORTHO05D004866 8.3e-92 340.5 182 84.6
Pp3c11_12990 Physcomitrium patens HOM05D003823 ORTHO05D004866 1.0e-89 333.6 182 85.2
Haze_07352 Corylus avellana HOM05D003823 ORTHO05D004866 1.7e-89 332.8 253 66.4
CSS0031561 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 4.3e-88 328.2 189 82.5
CBR_g29439 Chara braunii HOM05D003823 ORTHO05D004866 9.5e-88 327.0 183 79.8
Pp3c7_13070 Physcomitrium patens HOM05D003823 ORTHO05D004866 9.9e-85 317.0 182 81.3
GSVIVG01008037001 Vitis vinifera HOM05D003823 ORTHO05D004866 9.9e-85 317.0 162 88.9
SGA_v2.0_scaffold193G40709 Striga asiatica HOM05D003823 ORTHO05D004866 1.7e-84 316.2 191 77.0
CSS0019545 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.9e-80 302.8 188 75.0
CDE09G0968 Ceratophyllum demersum HOM05D005655 ORTHO05D007386 1.4e-78 296.6 152 88.2
QL93p0043_0002 Quercus lobata HOM05D003823 ORTHO05D004866 6.0e-74 281.2 143 90.2
MBI05_g00394_MAGBIO Magnolia biondii HOM05D000046 ORTHO05D000195 5.1e-73 278.1 143 88.8
Nitab4.5_0012727g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 4.3e-72 275.0 142 89.4
SEGI_34945 Sequoiadendron giganteum HOM05D003823 ORTHO05D004866 8.1e-71 270.8 139 88.5
Actinidia17538 Actinidia chinensis HOM05D003823 ORTHO05D004866 1.1e-67 260.4 129 89.9
CSS0004961 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.5e-64 250.0 188 66.5
Eucgr.G00164 Eucalyptus grandis HOM05D003823 ORTHO05D004866 5.6e-64 248.1 136 83.1
TAR729G0007 Trochodendron aralioides HOM05D003823 ORTHO05D004866 2.1e-63 246.1 164 73.2
Manes.01G188500 Manihot esculenta HOM05D003823 ORTHO05D004866 2.8e-63 245.7 128 85.2
Eucgr.G00114 Eucalyptus grandis HOM05D003823 ORTHO05D004866 4.8e-63 245.0 150 78.7
Lj4A511G17 Lonicera japonica HOM05D003823 ORTHO05D004866 1.5e-61 240.0 188 65.4
MCO13G641 Micromonas commoda HOM05D003823 ORTHO05D004866 6.4e-60 234.6 188 52.7
Cre12.g499900 Chlamydomonas reinhardtii HOM05D003823 ORTHO05D004866 5.5e-59 231.5 189 56.6
Lj4A501G12 Lonicera japonica HOM05D003823 ORTHO05D004866 6.0e-50 201.4 166 62.7
Atru.chr9.2289 Acer truncatum HOM05D003823 ORTHO05D004866 7.4e-48 194.5 157 65.0
Gorai.007G237600 Gossypium raimondii HOM05D003823 ORTHO05D004866 9.0e-46 187.6 90 90.0
Gohir.D02G085100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 2.5e-43 179.5 90 87.8
Gohir.A08G078101 Gossypium hirsutum HOM05D003823 ORTHO05D004866 2.1e-42 176.4 103 76.7
CSS0033378 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 2.7e-42 176.0 90 85.6
Gorai.005G191600 Gossypium raimondii HOM05D003823 ORTHO05D004866 6.1e-42 174.9 87 86.2
Gorai.003G098000 Gossypium raimondii HOM05D003823 ORTHO05D017994 1.0e-41 174.1 87 86.2
Gohir.D06G139701 Gossypium hirsutum HOM05D003823 ORTHO05D017994 2.3e-41 172.9 87 86.2
Gorai.008G100600 Gossypium raimondii HOM05D003823 ORTHO05D004866 3.9e-41 172.2 87 86.2
Gohir.A05G198301 Gossypium hirsutum HOM05D003823 ORTHO05D004866 6.7e-41 171.4 87 85.1
Gohir.D03G122233 Gossypium hirsutum HOM05D003823 ORTHO05D004866 6.7e-41 171.4 87 85.1
Gohir.D06G082500 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.4e-38 163.7 87 83.9
Lj4g0026130 Lotus japonicus HOM05D003823 ORTHO05D004866 2.9e-36 156.0 99 78.8
CSS0038842 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 6.5e-36 154.8 158 51.3
Gorai.013G138400 Gossypium raimondii HOM05D003823 ORTHO05D004866 9.4e-35 151.0 79 82.3
Thecc.02G319100 Theobroma cacao HOM05D003823 ORTHO05D004866 5.1e-33 145.2 100 73.0
unitig_0.g782 Utricularia gibba HOM05D003823 ORTHO05D004866 3.3e-32 142.5 69 84.1
Sabra15G0049800 Salix brachista HOM05D003823 ORTHO05D000412 1.2e-29 134.0 70 90.0
Gohir.A01G072501 Gossypium hirsutum HOM05D003823 ORTHO05D017994 9.4e-27 124.4 62 83.9
Gohir.A05G203200 Gossypium hirsutum HOM05D003823 ORTHO05D017994 9.4e-27 124.4 62 83.9
Gohir.A10G203700 Gossypium hirsutum HOM05D003823 ORTHO05D017994 9.4e-27 124.4 62 83.9
Gohir.A12G000600 Gossypium hirsutum HOM05D003823 ORTHO05D017994 9.4e-27 124.4 62 83.9
Gohir.D06G205050 Gossypium hirsutum HOM05D003823 ORTHO05D017994 9.4e-27 124.4 62 83.9
Gohir.D08G111400 Gossypium hirsutum HOM05D003823 ORTHO05D017994 9.4e-27 124.4 62 83.9
Gorai.005G095900 Gossypium raimondii HOM05D003823 ORTHO05D218813 2.0e-16 90.1 44 90.9
Sabra15G0057900 Salix brachista HOM05D003823 ORTHO05D349330 2.7e-13 79.7 43 86.0
Duzib248G1489 Durio zibethinus HOM05D003823 ORTHO05D186086 3.5e-13 79.3 55 69.1


User provided reference genes

Program Settings