Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG4G13260 Aethionema arabicum HOM05D008124 ORTHO05D004072 1.1e-197 693.3 412 100.0
Thhalv10013799m.g Eutrema salsugineum HOM05D008124 ORTHO05D004072 1.6e-111 407.1 310 68.4
Sp6g17920 Schrenkiella parvula HOM05D008124 ORTHO05D004072 3.6e-108 396.0 310 64.8
AL5G21140 Arabidopsis lyrata HOM05D008124 ORTHO05D004072 6.8e-107 391.7 307 65.5
C09p47180 Brassica napus HOM05D008124 ORTHO05D004072 9.2e-104 381.3 313 65.2
BolC9t57572H Brassica oleracea HOM05D008124 ORTHO05D004072 2.7e-103 379.8 313 64.9
Carub.0005s0890 Capsella rubella HOM05D008124 ORTHO05D004072 1.7e-102 377.1 311 63.7
THA.LOC104810998 Tarenaya hassleriana HOM05D008124 ORTHO05D004072 5.0e-102 375.6 320 57.5
A10p13280 Brassica napus HOM05D008124 ORTHO05D004072 1.5e-101 374.0 313 62.3
AT3G42860 Arabidopsis thaliana HOM05D008124 ORTHO05D004072 9.5e-101 371.3 286 65.7
CARHR152360 Cardamine hirsuta HOM05D008124 ORTHO05D004072 1.6e-100 370.5 307 61.2
BraA10t43425Z Brassica rapa HOM05D008124 ORTHO05D004072 2.3e-99 366.7 313 62.0
GSVIVG01018616001 Vitis vinifera HOM05D008124 ORTHO05D004072 3.8e-57 226.5 304 43.1
Rhsim07G0073400 Rhododendron simsii HOM05D008124 ORTHO05D004072 1.3e-54 218.0 318 40.3
TWI60G0051 Tripterygium wilfordii HOM05D008124 ORTHO05D004072 3.0e-54 216.9 297 41.8
CANSAT64G0620 Cannabis sativa HOM05D008124 ORTHO05D004072 6.7e-54 215.7 335 39.7
Sed0004202 Sechium edule HOM05D008124 ORTHO05D004072 1.8e-51 207.6 337 41.5
TAR627G0754 Trochodendron aralioides HOM05D008124 ORTHO05D004072 4.1e-51 206.5 319 40.1
MD17G1125500 Malus domestica HOM05D008124 ORTHO05D004072 2.6e-50 203.8 361 36.6
Manes.09G074700 Manihot esculenta HOM05D008124 ORTHO05D004072 1.7e-49 201.1 288 41.3
RcHm_v2.0_Chr2g0154211 Rosa chinensis HOM05D008124 ORTHO05D004072 5.0e-49 199.5 355 37.5
Prupe.3G190200 Prunus persica HOM05D008124 ORTHO05D004072 6.5e-49 199.1 351 37.6
Potri.001G318100 Populus trichocarpa HOM05D008124 ORTHO05D004072 9.3e-48 195.3 308 37.7
PGSC0003DMG400027518 Solanum tuberosum HOM05D008124 ORTHO05D004072 2.7e-47 193.7 340 37.9
CAN.G134.65 Capsicum annuum HOM05D008124 ORTHO05D004072 7.9e-47 192.2 280 39.3
FAN14G4038 Fragaria x ananassa HOM05D000027 ORTHO05D004072 1.8e-46 191.0 240 43.3
FAN02G4088 Fragaria x ananassa HOM05D008124 ORTHO05D004072 5.1e-46 189.5 212 45.8
Sabra16G0201300 Salix brachista HOM05D008124 ORTHO05D004072 5.1e-46 189.5 299 39.1
Eucgr.K01332 Eucalyptus grandis HOM05D008124 ORTHO05D004072 1.1e-45 188.3 335 37.3
FvH4_6g39844 Fragaria vesca HOM05D008124 ORTHO05D004072 4.3e-45 186.4 212 45.3
Solyc01g097070.4 Solanum lycopersicum HOM05D008124 ORTHO05D004072 2.8e-44 183.7 303 37.6
PGR004G0249 Punica granatum HOM05D008124 ORTHO05D004072 3.7e-44 183.3 320 37.5
HPP92_017732 Vanilla planifolia HOM05D008124 ORTHO05D004072 4.8e-44 183.0 318 36.5
Sopen01g040750 Solanum pennellii HOM05D008124 ORTHO05D004072 1.4e-43 181.4 304 37.5
MBI02_g36352_MAGBIO Magnolia biondii HOM05D008124 ORTHO05D004072 6.9e-43 179.1 296 39.2
Zm00001eb059980 Zea mays HOM05D008124 ORTHO05D004072 1.3e-41 174.9 354 34.2
Os03g0786500 Oryza sativa ssp. japonica HOM05D008124 ORTHO05D004072 5.0e-41 172.9 305 36.7
Cfa000684 Carpinus fangiana HOM05D008124 ORTHO05D004072 2.5e-40 170.6 279 37.6
Nn4g26556 Nelumbo nucifera HOM05D008124 ORTHO05D004072 4.2e-40 169.9 268 38.8
ClCG07G010840 Citrullus lanatus HOM05D008124 ORTHO05D004072 5.5e-40 169.5 326 38.0
Sed0023600 Sechium edule HOM05D008124 ORTHO05D004072 2.3e-38 164.1 221 39.8
Nitab4.5_0005905g0010 Nicotiana tabacum HOM05D008124 ORTHO05D004072 4.3e-37 159.8 258 41.5
Mapoly0141s0028 Marchantia polymorpha HOM05D008124 ORTHO05D004072 1.8e-35 154.5 277 33.9
Haze_06124 Corylus avellana HOM05D008124 ORTHO05D004072 9.1e-35 152.1 237 38.4
Nitab4.5_0002247g0100 Nicotiana tabacum HOM05D008124 ORTHO05D004072 1.2e-34 151.8 254 40.2
AagrBONN_evm.TU.Sc2ySwM_228.5614 Anthoceros agrestis HOM05D008124 ORTHO05D004072 3.4e-34 150.2 237 40.1
PSO541G0277 Papaver somniferum HOM05D008124 ORTHO05D004072 1.0e-33 148.7 252 36.1
CDE02G3354 Ceratophyllum demersum HOM05D008124 ORTHO05D004072 5.2e-30 136.3 230 35.7
CsaV3_4G007470 Cucumis sativus L. HOM05D008124 ORTHO05D004072 1.1e-29 135.2 150 46.7
AUR62015176 Chenopodium quinoa HOM05D008124 ORTHO05D004072 4.4e-29 133.3 303 32.3
Duzib116G0777 Durio zibethinus HOM05D008124 ORTHO05D004072 1.1e-27 128.6 287 34.8
Dinv20269 Davidia involucrata HOM05D008124 ORTHO05D004072 1.4e-27 128.3 241 36.9
AUR62017629 Chenopodium quinoa HOM05D008124 ORTHO05D004072 7.0e-27 125.9 304 31.2
PSO170G6446 Papaver somniferum HOM05D008124 ORTHO05D004072 1.3e-25 121.7 192 36.5
TAR374G0633 Trochodendron aralioides HOM05D007742 ORTHO05D004072 1.1e-24 118.6 211 32.2
HPP92_017701 Vanilla planifolia HOM05D008124 ORTHO05D004072 1.5e-24 118.2 203 34.5
Peaxi162Scf00647g00014 Petunia axillaris HOM05D008124 ORTHO05D004072 7.2e-24 115.9 127 48.8
Nn4g22099 Nelumbo nucifera HOM05D007742 ORTHO05D004072 1.6e-23 114.8 144 41.7
Gohir.A06G110400 Gossypium hirsutum HOM05D008124 ORTHO05D004072 8.0e-23 112.5 299 32.1
Ah.01g013150 Amaranthus hybridus HOM05D008124 ORTHO05D004072 4.0e-22 110.2 321 27.4
Aqoxy5G03036 Aquilegia oxysepala HOM05D007742 ORTHO05D004072 9.7e-21 105.5 197 34.0
Sc16g0003130 Simmondsia chinensis HOM05D007742 ORTHO05D004072 5.3e-19 99.8 168 36.9
EL10Ac9g22884 Beta vulgaris HOM05D008124 ORTHO05D004072 1.6e-18 98.2 368 26.4
Thhalv10013728m.g Eutrema salsugineum HOM05D009880 ORTHO05D004072 3.5e-18 97.1 141 37.6
Potri.T125504 Populus trichocarpa HOM05D007742 ORTHO05D004072 1.3e-17 95.1 183 30.6
Sp6g30080 Schrenkiella parvula HOM05D009880 ORTHO05D004072 1.3e-17 95.1 142 35.2
Potri.T125604 Populus trichocarpa HOM05D007742 ORTHO05D004072 5.0e-17 93.2 142 33.1
CiPaw.15G155500 Carya illinoinensis HOM05D007742 ORTHO05D004072 1.9e-16 91.3 145 35.2
Potri.009G112676 Populus trichocarpa HOM05D007742 ORTHO05D004072 2.5e-16 90.9 142 32.4
EL10As2g23272 Beta vulgaris HOM05D007742 ORTHO05D004072 7.2e-16 89.4 138 32.6
A03p06280 Brassica napus HOM05D009880 ORTHO05D004072 1.6e-15 88.2 139 36.0
BraA03t09959Z Brassica rapa HOM05D009880 ORTHO05D004072 2.7e-15 87.4 139 36.0
PSO170G3234 Papaver somniferum HOM05D007742 ORTHO05D004072 6.1e-15 86.3 196 30.6
Cfa007153 Carpinus fangiana HOM05D007742 ORTHO05D004072 1.0e-14 85.5 179 34.6
Ciclev10014656m.g Citrus clementina HOM05D007742 ORTHO05D004072 1.0e-14 85.5 150 33.3
Sabra09G0086100 Salix brachista HOM05D007742 ORTHO05D004072 1.0e-14 85.5 162 30.9
BcaB01g05328 Brassica carinata HOM05D009880 ORTHO05D004072 1.8e-14 84.7 139 35.3
C03p07260 Brassica napus HOM05D009880 ORTHO05D004072 1.8e-14 84.7 139 35.3
Dinv33270 Davidia involucrata HOM05D007742 ORTHO05D004072 1.8e-14 84.7 125 32.8
Aa31LG2G11760 Aethionema arabicum HOM05D009880 ORTHO05D004072 2.3e-14 84.3 152 32.2
PSO357G0543 Papaver somniferum HOM05D007742 ORTHO05D004072 3.0e-14 84.0 196 30.1
Ciclev10014788m.g Citrus clementina HOM05D007742 ORTHO05D004072 4.0e-14 83.6 206 29.1
Carub.0006s1211 Capsella rubella HOM05D009880 ORTHO05D004072 5.2e-14 83.2 146 32.9
AL6G24570 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 6.8e-14 82.8 152 33.6
AT5G13920 Arabidopsis thaliana HOM05D009880 ORTHO05D004072 8.8e-14 82.4 142 33.8
THA.LOC104823128 Tarenaya hassleriana HOM05D009880 ORTHO05D004072 1.2e-13 82.0 136 32.4
Sabra09G0086000 Salix brachista HOM05D007742 ORTHO05D004072 3.4e-13 80.5 169 30.2
BcaB07g31107 Brassica carinata HOM05D009880 ORTHO05D004072 9.8e-13 79.0 138 34.8
BraA09t37545Z Brassica rapa HOM05D009880 ORTHO05D004072 1.3e-12 78.6 138 34.1
Gorai.010G143700 Gossypium raimondii HOM05D008124 ORTHO05D004072 1.3e-12 78.6 123 43.9
Atru.chr6.2712 Acer truncatum HOM05D007742 ORTHO05D004072 2.2e-12 77.8 133 34.6
QL02p069032 Quercus lobata HOM05D007742 ORTHO05D004072 2.2e-12 77.8 138 31.2
Manes.04G094400 Manihot esculenta HOM05D007742 ORTHO05D004072 3.7e-12 77.0 179 28.5
BcaC04g22033 Brassica carinata HOM05D009880 ORTHO05D004072 6.3e-12 76.3 138 33.3
C09p24280 Brassica napus HOM05D009880 ORTHO05D004072 6.3e-12 76.3 138 33.3
BolC9t55345H Brassica oleracea HOM05D009880 ORTHO05D004072 6.3e-12 76.3 138 33.3
A09p19280 Brassica napus HOM05D009880 ORTHO05D004072 1.1e-11 75.5 152 32.9
Ah.03g136430 Amaranthus hybridus HOM05D007742 ORTHO05D004072 1.4e-11 75.1 140 30.0
Lj1g0006134 Lotus japonicus HOM05D007742 ORTHO05D004072 5.4e-11 73.2 128 32.0
Prupe.3G314400 Prunus persica HOM05D007742 ORTHO05D004072 5.4e-11 73.2 176 29.0
Haze_16000 Corylus avellana HOM05D013106 ORTHO05D017812 7.0e-11 72.8 163 30.1
PGR142G3827 Punica granatum HOM05D007742 ORTHO05D004072 9.1e-11 72.4 144 31.2
Lj1g0016784 Lotus japonicus HOM05D007742 ORTHO05D001134 2.7e-10 70.9 130 30.8
Lj2g0008812 Lotus japonicus HOM05D007742 ORTHO05D004072 3.5e-10 70.5 130 30.8
Carub.0002s0844 Capsella rubella HOM05D009880 ORTHO05D004072 1.7e-09 68.2 140 31.4
AUR62037803 Chenopodium quinoa HOM05D007742 ORTHO05D004072 3.8e-09 67.0 161 28.0
CSS0006654 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 8.5e-09 65.9 37 67.6
CSS0017436 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 8.5e-09 65.9 37 67.6
Ca_08225_v3 Cicer arietinum L. HOM05D007742 ORTHO05D004072 8.5e-09 65.9 134 29.1
PRCOL_00006794 Prasinoderma coloniale HOM05D008124 ORTHO05D004072 8.5e-09 65.9 106 34.0
QL02p068827 Quercus lobata HOM05D007742 ORTHO05D004072 1.5e-08 65.1 171 30.4
CARHR284540 Cardamine hirsuta HOM05D009880 ORTHO05D004072 2.5e-08 64.3 44 59.1
Actinidia37712 Actinidia chinensis HOM05D007742 ORTHO05D004072 3.2e-08 63.9 134 31.3
AT1G54930 Arabidopsis thaliana HOM05D009880 ORTHO05D004072 9.5e-08 62.4 44 56.8
EL10As2g23251 Beta vulgaris HOM05D007742 ORTHO05D004072 9.5e-08 62.4 169 26.6
Aa31LG2G11790 Aethionema arabicum HOM05D009880 ORTHO05D004072 1.6e-07 61.6 132 28.0
Glyma.19G105500 Glycine max HOM05D007742 ORTHO05D004072 1.6e-07 61.6 134 30.6
QL02p069084 Quercus lobata HOM05D007742 ORTHO05D004072 2.1e-07 61.2 127 28.3
Cc07_g01390 Coffea canephora HOM05D007742 ORTHO05D004072 3.6e-07 60.5 40 55.0
Cc07_g01400 Coffea canephora HOM05D007742 ORTHO05D004072 3.6e-07 60.5 40 55.0
CSS0026315 Camellia sinensis var. sinensis HOM05D007742 ORTHO05D004072 1.0e-06 58.9 64 40.6
CDE06G0867 Ceratophyllum demersum HOM05D007742 ORTHO05D004072 1.0e-06 58.9 69 39.1
Psat3g092040 Pisum sativum HOM05D007742 ORTHO05D004072 1.4e-06 58.5 140 27.9
arahy.Tifrunner.gnm1.ann1.T3P4RE Arachis hypogaea HOM05D007742 ORTHO05D004072 3.0e-06 57.4 128 34.4
arahy.Tifrunner.gnm1.ann1.U642C8 Arachis hypogaea HOM05D007742 ORTHO05D004072 3.0e-06 57.4 138 33.3
CARHR199510 Cardamine hirsuta HOM05D009880 ORTHO05D004072 3.0e-06 57.4 44 52.3
CSS0002164 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 8.8e-06 55.8 81 35.8
CSS0011273 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 8.8e-06 55.8 81 35.8


User provided reference genes

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