Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG4G1220 Aethionema arabicum HOM05D005650 ORTHO05D007020 8.1e-280 966.5 500 100.0
BcaB02g07240 Brassica carinata HOM05D005650 ORTHO05D007020 9.7e-225 783.5 504 81.5
C06p29600 Brassica napus HOM05D005650 ORTHO05D007020 1.4e-223 779.6 504 81.2
BcaC08g45346 Brassica carinata HOM05D005650 ORTHO05D007020 4.1e-223 778.1 504 81.0
CARHR073550 Cardamine hirsuta HOM05D005650 ORTHO05D007020 4.1e-223 778.1 504 80.8
Carub.0002s2663 Capsella rubella HOM05D005650 ORTHO05D007020 4.5e-222 774.6 504 80.8
AT1G80910 Arabidopsis thaliana HOM05D005650 ORTHO05D007020 2.9e-221 771.9 504 80.4
AL2G40470 Arabidopsis lyrata HOM05D005650 ORTHO05D007020 5.0e-221 771.2 504 81.0
Sp5g34830 Schrenkiella parvula HOM05D005650 ORTHO05D007020 3.2e-220 768.5 504 80.4
BraA07t30337Z Brassica rapa HOM05D005650 ORTHO05D007020 7.2e-220 767.3 523 78.4
Thhalv10018445m.g Eutrema salsugineum HOM05D005650 ORTHO05D007020 3.6e-219 765.0 504 80.8
A07p26920 Brassica napus HOM05D005650 ORTHO05D007020 4.7e-219 764.6 494 81.8
BolC6t38125H Brassica oleracea HOM05D005650 ORTHO05D007020 4.7e-219 764.6 524 77.9
Thhalv10007433m.g Eutrema salsugineum HOM05D005650 ORTHO05D007020 2.2e-208 729.2 509 75.6
AT1G16020 Arabidopsis thaliana HOM05D005650 ORTHO05D007020 1.8e-207 726.1 522 73.6
CARHR016520 Cardamine hirsuta HOM05D005650 ORTHO05D007020 3.5e-206 721.8 509 74.5
AL1G28180 Arabidopsis lyrata HOM05D005650 ORTHO05D007020 1.7e-205 719.5 522 73.2
Aa31LG7G600 Aethionema arabicum HOM05D005650 ORTHO05D007020 2.8e-203 712.2 513 74.1
Carub.0001s1582 Capsella rubella HOM05D005650 ORTHO05D007020 1.2e-201 706.8 509 72.9
Sp1g14330 Schrenkiella parvula HOM05D005650 ORTHO05D007020 2.3e-197 692.6 523 70.7
BraA09t41479Z Brassica rapa HOM05D005650 ORTHO05D007020 4.3e-196 688.3 524 71.4
A09p61060 Brassica napus HOM05D005650 ORTHO05D007020 3.6e-195 685.3 524 71.2
C08p44650 Brassica napus HOM05D005650 ORTHO05D007020 4.7e-195 684.9 522 70.7
BolC8t52011H Brassica oleracea HOM05D005650 ORTHO05D007020 1.4e-194 683.3 522 70.7
MD13G1018100 Malus domestica HOM05D005650 ORTHO05D007020 1.1e-191 673.7 517 68.7
Prupe.7G053000 Prunus persica HOM05D005650 ORTHO05D007020 1.4e-191 673.3 519 68.2
THA.LOC104814015 Tarenaya hassleriana HOM05D005650 ORTHO05D007020 2.4e-191 672.5 535 67.9
Duzib248G0273 Durio zibethinus HOM05D005650 ORTHO05D007020 3.2e-191 672.2 517 67.9
MD16G1016000 Malus domestica HOM05D005650 ORTHO05D007020 3.2e-191 672.2 519 68.0
CSS0031782 Camellia sinensis var. sinensis HOM05D005650 ORTHO05D007020 4.1e-191 671.8 518 67.8
Ciclev10014948m.g Citrus clementina HOM05D005650 ORTHO05D007020 1.2e-190 670.2 517 67.9
Thecc.02G307700 Theobroma cacao HOM05D005650 ORTHO05D007020 7.8e-190 667.5 530 66.6
Actinidia12402 Actinidia chinensis HOM05D005650 ORTHO05D007020 1.3e-189 666.8 527 66.4
Manes.15G123300 Manihot esculenta HOM05D005650 ORTHO05D007020 1.7e-189 666.4 517 67.5
Cfa015047 Carpinus fangiana HOM05D005650 ORTHO05D007020 2.3e-189 666.0 517 67.9
BcaB03g14509 Brassica carinata HOM05D005650 ORTHO05D007020 8.6e-189 664.1 510 70.2
QL03p037983 Quercus lobata HOM05D005650 ORTHO05D007020 1.9e-188 662.9 516 67.1
Gohir.A03G112000 Gossypium hirsutum HOM05D005650 ORTHO05D007020 5.6e-188 661.4 517 66.7
GSVIVG01011626001 Vitis vinifera HOM05D005650 ORTHO05D007020 2.1e-187 659.4 531 66.5
Dinv26372 Davidia involucrata HOM05D005650 ORTHO05D007020 3.6e-187 658.7 518 66.4
TAR622G0850 Trochodendron aralioides HOM05D005650 ORTHO05D007020 3.6e-187 658.7 517 67.3
Gorai.005G152600 Gossypium raimondii HOM05D005650 ORTHO05D007020 8.1e-187 657.5 530 66.0
Potri.008G137000 Populus trichocarpa HOM05D005650 ORTHO05D007020 8.1e-187 657.5 516 67.1
Gohir.D02G136500 Gossypium hirsutum HOM05D005650 ORTHO05D007020 1.1e-186 657.1 530 66.0
Hma1.2p1_0192F.1_g083470 Hydrangea macrophylla HOM05D005650 ORTHO05D007020 1.1e-186 657.1 514 66.3
Atru.chr11.825 Acer truncatum HOM05D005650 ORTHO05D007020 2.3e-186 656.0 530 65.1
FvH4_4g33280 Fragaria vesca HOM05D005650 ORTHO05D007020 3.1e-186 655.6 516 66.3
Haze_10848 Corylus avellana HOM05D005650 ORTHO05D007020 6.8e-186 654.4 530 66.0
Duzib251G0272 Durio zibethinus HOM05D005650 ORTHO05D007020 8.9e-186 654.1 531 65.2
RcHm_v2.0_Chr4g0442431 Rosa chinensis HOM05D005650 ORTHO05D007020 1.5e-185 653.3 519 66.1
MSTRG.23341 Avicennia marina HOM05D005650 ORTHO05D007020 9.9e-185 650.6 516 65.7
Glyma.05G240900 Glycine max HOM05D005650 ORTHO05D007020 2.9e-184 649.0 514 66.0
PSO782G4204 Papaver somniferum HOM05D005650 ORTHO05D007020 2.9e-184 649.0 517 66.0
Aqoxy2G00265 Aquilegia oxysepala HOM05D005650 ORTHO05D007020 4.9e-184 648.3 515 65.2
Sed0001111 Sechium edule HOM05D005650 ORTHO05D007020 8.3e-184 647.5 514 65.4
Lj4g0026003 Lotus japonicus HOM05D005650 ORTHO05D007020 1.4e-183 646.7 517 65.0
Cc11_g06590 Coffea canephora HOM05D005650 ORTHO05D007020 2.4e-183 646.0 531 65.5
arahy.Tifrunner.gnm1.ann1.L5UDEC Arachis hypogaea HOM05D005650 ORTHO05D007020 3.2e-183 645.6 530 64.3
CsaV3_5G014540 Cucumis sativus L. HOM05D005650 ORTHO05D007020 1.2e-182 643.7 505 66.1
PSO063G5777 Papaver somniferum HOM05D005650 ORTHO05D007020 1.6e-182 643.3 517 65.4
Phvul.011G008500 Phaseolus vulgaris HOM05D005650 ORTHO05D007020 2.7e-182 642.5 508 65.6
Eucgr.B02693 Eucalyptus grandis HOM05D005650 ORTHO05D007020 1.0e-181 640.6 534 63.9
Sc14g0006580 Simmondsia chinensis HOM05D005650 ORTHO05D007020 1.0e-181 640.6 517 65.2
Nn8g41275 Nelumbo nucifera HOM05D005650 ORTHO05D007020 3.9e-181 638.6 523 64.2
CiPaw.06G055300 Carya illinoinensis HOM05D005650 ORTHO05D007020 1.5e-180 636.7 518 65.1
DCAR_023564 Daucus carota HOM05D005650 ORTHO05D007020 1.9e-180 636.3 518 64.1
arahy.Tifrunner.gnm1.ann1.NIUA4E Arachis hypogaea HOM05D005650 ORTHO05D007020 3.3e-180 635.6 560 61.1
SGA_v2.0_scaffold111G31522 Striga asiatica HOM05D005650 ORTHO05D007020 5.6e-180 634.8 536 62.7
Psat4g004560 Pisum sativum HOM05D005650 ORTHO05D007020 1.6e-179 633.3 514 64.0
Sopen02g013060 Solanum pennellii HOM05D005650 ORTHO05D007020 3.6e-179 632.1 517 65.0
Glyma.08G047900 Glycine max HOM05D005650 ORTHO05D007020 6.2e-179 631.3 528 64.0
ECA234G4226 Erigeron canadensis HOM05D005650 ORTHO05D007020 1.1e-178 630.6 506 65.4
VMungo0251G0664 Vigna mungo HOM05D005650 ORTHO05D007020 1.4e-178 630.2 500 66.0
Lsat_1_v5_gn_4_23420 Lactuca sativa HOM05D005650 ORTHO05D007020 5.2e-178 628.2 527 63.2
Sabra08G0104500 Salix brachista HOM05D005650 ORTHO05D007020 5.2e-178 628.2 576 60.1
Medtr8g105900 Medicago truncatula HOM05D005650 ORTHO05D007020 6.8e-178 627.9 530 62.8
Rhsim09G0087900 Rhododendron simsii HOM05D005650 ORTHO05D007020 6.8e-178 627.9 508 66.1
Solyc02g062110.4 Solanum lycopersicum HOM05D005650 ORTHO05D007020 8.9e-178 627.5 513 64.5
CANSAT78G2020 Cannabis sativa HOM05D005650 ORTHO05D007020 1.2e-177 627.1 535 63.4
AUR62036082 Chenopodium quinoa HOM05D005650 ORTHO05D007020 1.5e-177 626.7 512 62.3
VMungo1127G0110 Vigna mungo HOM05D005650 ORTHO05D007020 4.4e-177 625.2 500 65.2
AUR62035393 Chenopodium quinoa HOM05D005650 ORTHO05D007020 5.8e-177 624.8 512 62.9
Nitab4.5_0002337g0070 Nicotiana tabacum HOM05D005650 ORTHO05D007020 7.6e-177 624.4 532 62.8
HanXRQChr17g0565991 Helianthus annuus HOM05D005650 ORTHO05D007020 1.7e-176 623.2 514 63.4
CAN.G1206.2 Capsicum annuum HOM05D005650 ORTHO05D007020 3.2e-175 619.0 519 63.6
Hund07852 Selenicereus undatus HOM05D005650 ORTHO05D007020 1.6e-174 616.7 519 63.0
TWI74G1652 Tripterygium wilfordii HOM05D005650 ORTHO05D007020 2.3e-173 612.8 532 61.7
Cpa.g.sc362.1 Carica papaya HOM05D005650 ORTHO05D007020 1.1e-172 610.5 468 67.1
SalBow3G3602 Salvia bowleyana HOM05D005650 ORTHO05D007020 1.9e-167 593.2 545 59.1
Lalb_Chr14g0362121 Lupinus albus HOM05D005650 ORTHO05D007020 4.2e-167 592.0 509 60.3
unitig_21.g20969 Utricularia gibba HOM05D005650 ORTHO05D007020 3.0e-165 585.9 536 58.4
TPR.G19250 Trifolium pratense HOM05D005650 ORTHO05D007020 5.1e-165 585.1 508 60.8
FAN07G2273 Fragaria x ananassa HOM05D005650 ORTHO05D007020 4.0e-162 575.5 508 61.6
FAN17G2396 Fragaria x ananassa HOM05D005650 ORTHO05D007020 2.0e-161 573.2 505 61.2
ATR0021G018 Amborella trichopoda HOM05D005650 ORTHO05D007020 2.6e-161 572.8 512 60.9
Dinv01894 Davidia involucrata HOM05D005650 ORTHO05D007020 1.6e-158 563.5 490 62.9
Lj6C735G0 Lonicera japonica HOM05D005650 ORTHO05D007020 7.9e-158 561.2 549 56.5
Os08g0427300 Oryza sativa ssp. japonica HOM05D005650 ORTHO05D007020 8.7e-157 557.8 514 57.2
Nitab4.5_0000188g0130 Nicotiana tabacum HOM05D005650 ORTHO05D007020 1.8e-154 550.1 524 58.6
Zm00001eb179310 Zea mays HOM05D005650 ORTHO05D007020 2.4e-154 549.7 510 58.2
Ah.01g015510 Amaranthus hybridus HOM05D005650 ORTHO05D007020 4.9e-152 542.0 527 56.4
SEGI_01999 Sequoiadendron giganteum HOM05D005650 ORTHO05D007020 1.2e-150 537.3 517 55.9
CiPaw.05G158000 Carya illinoinensis HOM05D005650 ORTHO05D007020 4.3e-148 528.9 433 64.7
PGR004G1106 Punica granatum HOM05D005650 ORTHO05D007020 9.6e-148 527.7 442 62.7
Migut.H02363 Erythranthe guttata HOM05D005650 ORTHO05D007020 1.3e-144 517.3 518 55.2
MELO3C026414.2 Cucumis melo HOM05D005650 ORTHO05D007020 3.8e-144 515.8 432 63.2
CDE05G1068 Ceratophyllum demersum HOM05D005650 ORTHO05D007020 6.5e-144 515.0 467 59.7
Peaxi162Scf00439g00528 Petunia axillaris HOM05D005650 ORTHO05D007020 3.0e-141 506.1 519 55.3
SHI04292 Sapria himalayana HOM05D005650 ORTHO05D007020 2.5e-140 503.1 497 56.1
Sed0000862 Sechium edule HOM05D005650 ORTHO05D007020 6.5e-128 461.8 446 57.2
Mapoly0059s0063 Marchantia polymorpha HOM05D005650 ORTHO05D007020 7.7e-121 438.3 525 48.2
Pp3c16_7940 Physcomitrium patens HOM05D005650 ORTHO05D007020 2.6e-116 423.3 518 47.5
HPP92_009689 Vanilla planifolia HOM05D005650 ORTHO05D007020 5.0e-112 409.1 396 57.3
SMO146G0258 Selaginella moellendorffii HOM05D005650 ORTHO05D007020 1.5e-111 407.5 494 43.9
COL.COLO4_27613 Corchorus olitorius HOM05D005650 ORTHO05D007020 9.4e-111 404.8 357 62.2
EL10Ac9g20842 Beta vulgaris HOM05D005650 ORTHO05D007020 1.8e-101 374.0 392 55.1
AagrBONN_evm.TU.Sc2ySwM_117.2271 Anthoceros agrestis HOM05D005650 ORTHO05D007020 1.7e-96 357.5 470 44.9
Oeu059514.1 Olea europaea HOM05D005650 ORTHO05D007020 3.0e-80 303.5 472 43.4
Dinv00920 Davidia involucrata HOM05D005650 ORTHO05D007020 3.5e-49 200.3 139 71.9
C06p32880 Brassica napus HOM05D005650 ORTHO05D007020 1.6e-46 191.4 137 73.7
Oeu036123.1 Olea europaea HOM05D005650 ORTHO05D007020 1.5e-44 184.9 124 71.0
DCAR_023531 Daucus carota HOM05D005650 ORTHO05D007020 7.4e-39 166.0 435 35.2
C05p23900 Brassica napus HOM05D005650 ORTHO05D007020 6.0e-33 146.4 275 40.4
C06p32890 Brassica napus HOM05D005650 ORTHO05D007020 8.4e-27 125.9 100 71.0
Lsat_1_v5_gn_7_69840 Lactuca sativa HOM05D005650 ORTHO05D007020 2.8e-22 110.9 72 69.4
Lsat_1_v5_gn_2_121941 Lactuca sativa HOM05D005650 ORTHO05D007020 5.9e-20 103.2 74 67.6
CiPaw.05G157900 Carya illinoinensis HOM05D005650 ORTHO05D007020 1.3e-19 102.1 79 63.3
CBR_g31091 Chara braunii HOM05D000019 ORTHO05D000048 2.2e-19 101.3 143 36.4
Lsat_1_v5_gn_1_123601 Lactuca sativa HOM05D005650 ORTHO05D007020 2.2e-19 101.3 68 69.1
MELO3C019077.2 Cucumis melo HOM05D005650 ORTHO05D007020 2.7e-17 94.4 72 65.3
Cre07.g327000 Chlamydomonas reinhardtii HOM05D005650 ORTHO05D007020 1.1e-15 89.0 237 28.7
BolC6t38409H Brassica oleracea HOM05D005650 ORTHO05D007020 3.7e-14 84.0 116 48.3
C06p53600 Brassica napus HOM05D005650 ORTHO05D040396 1.6e-09 68.6 42 83.3
CBR_g31097 Chara braunii HOM05D000019 ORTHO05D000048 4.7e-09 67.0 53 54.7


User provided reference genes

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