Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G9430 Aethionema arabicum HOM05D002306 ORTHO05D006484 5.1e-45 184.1 97 100.0
Sp6g15200 Schrenkiella parvula HOM05D002306 ORTHO05D006484 3.5e-38 161.4 93 90.3
Carub.0008s1324 Capsella rubella HOM05D002306 ORTHO05D006484 1.0e-37 159.8 93 88.2
Thhalv10015123m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 1.7e-37 159.1 97 87.6
Thhalv10022935m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 1.7e-37 159.1 97 85.6
AL8G27670 Arabidopsis lyrata HOM05D002306 ORTHO05D006484 5.1e-37 157.5 93 87.1
CARHR266060 Cardamine hirsuta HOM05D002306 ORTHO05D006484 1.1e-36 156.4 93 88.2
AT5G53045 Arabidopsis thaliana HOM05D002306 ORTHO05D006484 1.5e-36 156.0 93 87.1
A10p10530 Brassica napus HOM05D002306 ORTHO05D006484 2.5e-36 155.2 93 88.2
BraA10t43137Z Brassica rapa HOM05D002306 ORTHO05D006484 2.5e-36 155.2 93 88.2
BcaB08g35664 Brassica carinata HOM05D002306 ORTHO05D006484 1.8e-34 149.1 93 86.0
BcaC04g20513 Brassica carinata HOM05D002306 ORTHO05D006484 3.1e-34 148.3 95 84.2
C09p42750 Brassica napus HOM05D002306 ORTHO05D006484 3.1e-34 148.3 95 84.2
BolC9t57151H Brassica oleracea HOM05D002306 ORTHO05D006484 3.1e-34 148.3 95 84.2
A03p15430 Brassica napus HOM05D002306 ORTHO05D006484 4.0e-34 147.9 93 81.7
BraA03t10832Z Brassica rapa HOM05D002306 ORTHO05D006484 5.3e-34 147.5 93 81.7
BraA03t10833Z Brassica rapa HOM05D002306 ORTHO05D006484 5.3e-34 147.5 93 81.7
A03p15460 Brassica napus HOM05D002306 ORTHO05D006484 4.5e-33 144.4 89 82.0
BraA03t10836Z Brassica rapa HOM05D002306 ORTHO05D006484 4.5e-33 144.4 89 82.0
BraA03t10838Z Brassica rapa HOM05D002306 ORTHO05D006484 4.5e-33 144.4 89 82.0
BraA03t10841Z Brassica rapa HOM05D002306 ORTHO05D006484 4.5e-33 144.4 89 82.0
BcaC01g06216 Brassica carinata HOM05D002306 ORTHO05D006484 2.4e-31 138.7 84 81.0
C03p18020 Brassica napus HOM05D002306 ORTHO05D006484 2.4e-31 138.7 84 81.0
BolC3t14207H Brassica oleracea HOM05D002306 ORTHO05D006484 2.4e-31 138.7 84 81.0
THA.LOC104825151 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 3.2e-31 138.3 79 88.6
RcHm_v2.0_Chr1g0381471 Rosa chinensis HOM05D002306 ORTHO05D006484 3.5e-30 134.8 93 75.3
FAN10G3342 Fragaria x ananassa HOM05D002306 ORTHO05D006484 3.0e-29 131.7 93 75.3
COL.COLO4_16787 Corchorus olitorius HOM05D002306 ORTHO05D006484 3.9e-29 131.3 90 74.4
AUR62006081 Chenopodium quinoa HOM05D002306 ORTHO05D006484 5.1e-29 131.0 86 76.7
Haze_00198 Corylus avellana HOM05D002306 ORTHO05D005773 5.1e-29 131.0 93 73.1
Prupe.2G312900 Prunus persica HOM05D002306 ORTHO05D006484 5.1e-29 131.0 93 74.2
CAN.G481.25 Capsicum annuum HOM05D002306 ORTHO05D006484 6.7e-29 130.6 82 80.5
Hund11652 Selenicereus undatus HOM05D002306 ORTHO05D006484 6.7e-29 130.6 83 80.7
Atru.chr1.2784 Acer truncatum HOM05D002306 ORTHO05D006484 1.1e-28 129.8 89 73.0
MD01G1222500 Malus domestica HOM05D002306 ORTHO05D006484 1.1e-28 129.8 93 73.1
Ah.07g205530 Amaranthus hybridus HOM05D002306 ORTHO05D006484 1.9e-28 129.0 84 78.6
Solyc03g083020.3 Solanum lycopersicum HOM05D002306 ORTHO05D006484 1.9e-28 129.0 79 82.3
Sopen03g022830 Solanum pennellii HOM05D002306 ORTHO05D006484 1.9e-28 129.0 79 82.3
PGSC0003DMG402018530 Solanum tuberosum HOM05D002306 ORTHO05D006484 1.9e-28 129.0 79 82.3
CSS0043540 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 3.3e-28 128.3 79 78.5
QL09p008635 Quercus lobata HOM05D002306 ORTHO05D006484 3.3e-28 128.3 93 71.0
TPR.G33626 Trifolium pratense HOM05D002306 ORTHO05D006484 3.3e-28 128.3 89 73.0
Sabra12G0015400 Salix brachista HOM05D002306 ORTHO05D006484 4.3e-28 127.9 87 73.6
FAN10G1840 Fragaria x ananassa HOM05D002306 ORTHO05D006484 5.6e-28 127.5 93 74.2
Duzib084G1054 Durio zibethinus HOM05D002306 ORTHO05D006484 9.6e-28 126.7 90 72.2
ECA232G1226 Erigeron canadensis HOM05D002306 ORTHO05D006484 9.6e-28 126.7 79 77.2
Potri.015G011500 Populus trichocarpa HOM05D002306 ORTHO05D006484 9.6e-28 126.7 89 71.9
ClCG05G009020 Citrullus lanatus HOM05D002306 ORTHO05D006484 1.6e-27 125.9 93 67.7
Dinv29265 Davidia involucrata HOM05D002306 ORTHO05D006484 1.6e-27 125.9 97 70.1
MD07G1293100 Malus domestica HOM05D002306 ORTHO05D006484 1.6e-27 125.9 92 71.7
Manes.05G190300 Manihot esculenta HOM05D002306 ORTHO05D006484 1.6e-27 125.9 92 70.7
Cfa016242 Carpinus fangiana HOM05D002306 ORTHO05D006484 2.1e-27 125.6 79 79.7
ECA233G2756 Erigeron canadensis HOM05D002476 ORTHO05D006484 2.8e-27 125.2 83 73.5
MELO3C008504.2 Cucumis melo HOM05D002306 ORTHO05D006484 3.7e-27 124.8 95 65.3
Nn8g40946 Nelumbo nucifera HOM05D002306 ORTHO05D006484 3.7e-27 124.8 84 73.8
Phvul.001G057400 Phaseolus vulgaris HOM05D002306 ORTHO05D006484 3.7e-27 124.8 83 75.9
Gohir.A09G184900 Gossypium hirsutum HOM05D002306 ORTHO05D006484 4.8e-27 124.4 90 68.9
CANSAT21G2118 Cannabis sativa HOM05D002306 ORTHO05D006484 6.2e-27 124.0 86 73.3
Actinidia08660 Actinidia chinensis HOM05D002306 ORTHO05D006484 8.1e-27 123.6 97 67.0
Aqoxy5G04246 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 8.1e-27 123.6 96 67.7
MSTRG.8645 Avicennia marina HOM05D002306 ORTHO05D006484 8.1e-27 123.6 79 77.2
Medtr3g091850 Medicago truncatula HOM05D002306 ORTHO05D006484 8.1e-27 123.6 89 71.9
vmacro10128 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 8.1e-27 123.6 79 74.7
Nn3g18952 Nelumbo nucifera HOM05D002306 ORTHO05D006484 1.1e-26 123.2 86 72.1
Oeu037053.1 Olea europaea HOM05D002306 ORTHO05D006484 1.1e-26 123.2 79 75.9
Thecc.03G200700 Theobroma cacao HOM05D002306 ORTHO05D006484 1.1e-26 123.2 90 70.0
Aqoxy3G03743 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 1.4e-26 122.9 86 68.6
Lsat_1_v5_gn_8_5361 Lactuca sativa HOM05D002306 ORTHO05D006484 1.4e-26 122.9 84 71.4
TPR.G12084 Trifolium pratense HOM05D002306 ORTHO05D006484 1.4e-26 122.9 93 69.9
Gohir.D09G179800 Gossypium hirsutum HOM05D002306 ORTHO05D006484 2.4e-26 122.1 90 68.9
Peaxi162Scf00740g00131 Petunia axillaris HOM05D002306 ORTHO05D006484 2.4e-26 122.1 84 76.2
Gorai.006G201800 Gossypium raimondii HOM05D002306 ORTHO05D006484 3.1e-26 121.7 90 68.9
Medtr1g007870 Medicago truncatula HOM05D002306 ORTHO05D006484 3.1e-26 121.7 85 71.8
Psat5g075320 Pisum sativum HOM05D002306 ORTHO05D006484 3.1e-26 121.7 79 75.9
Sc13g0009850 Simmondsia chinensis HOM05D002306 ORTHO05D006484 3.1e-26 121.7 84 73.8
arahy.Tifrunner.gnm1.ann1.CGD4UQ Arachis hypogaea HOM05D002306 ORTHO05D006484 4.0e-26 121.3 93 71.0
Migut.F00201 Erythranthe guttata HOM05D002306 ORTHO05D006484 4.0e-26 121.3 79 73.4
Glyma.11G174073 Glycine max HOM05D002306 ORTHO05D006484 4.0e-26 121.3 86 73.3
Glyma.17G200500 Glycine max HOM05D002306 ORTHO05D006484 4.0e-26 121.3 86 73.3
TWI39G0647 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 5.3e-26 120.9 93 64.5
Eucgr.K00393 Eucalyptus grandis HOM05D002306 ORTHO05D006484 6.9e-26 120.6 79 77.2
SGA_v2.0_scaffold44G16812 Striga asiatica HOM05D002306 ORTHO05D005773 6.9e-26 120.6 93 66.7
vmacro06392 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 6.9e-26 120.6 91 68.1
arahy.Tifrunner.gnm1.ann1.84THGE Arachis hypogaea HOM05D002306 ORTHO05D006484 9.0e-26 120.2 93 71.0
Cc02_g01390 Coffea canephora HOM05D002306 ORTHO05D006484 9.0e-26 120.2 90 71.1
CsaV3_3G019760 Cucumis sativus L. HOM05D002306 ORTHO05D006484 9.0e-26 120.2 93 65.6
THA.LOC104803913 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 1.2e-25 119.8 74 83.8
arahy.Tifrunner.gnm1.ann1.K9F3KZ Arachis hypogaea HOM05D002306 ORTHO05D006484 1.5e-25 119.4 93 71.0
Lalb_Chr11g0066981 Lupinus albus HOM05D002306 ORTHO05D006484 1.5e-25 119.4 88 70.5
Lj6g0020019 Lotus japonicus HOM05D002306 ORTHO05D006484 2.0e-25 119.0 79 75.9
FvH4_7g31970 Fragaria vesca HOM05D002306 ORTHO05D006484 2.6e-25 118.6 78 80.8
Sed0012841 Sechium edule HOM05D002306 ORTHO05D006484 2.6e-25 118.6 93 63.4
CDE11G0760 Ceratophyllum demersum HOM05D002306 ORTHO05D006484 7.6e-25 117.1 89 66.3
FAN06G3491 Fragaria x ananassa HOM05D002306 ORTHO05D006484 1.3e-24 116.3 87 73.6
GSVIVG01038565001 Vitis vinifera HOM05D002306 ORTHO05D006484 1.3e-24 116.3 84 71.4
AUR62019413 Chenopodium quinoa HOM05D002306 ORTHO05D006484 1.7e-24 115.9 74 81.1
PGR042G2650 Punica granatum HOM05D002306 ORTHO05D006484 1.7e-24 115.9 79 73.4
Ciclev10023672m.g Citrus clementina HOM05D002306 ORTHO05D006484 2.2e-24 115.5 88 64.8
EL10Ac3g05270 Beta vulgaris HOM05D002306 ORTHO05D006484 2.9e-24 115.2 74 81.1
PSO135G0367 Papaver somniferum HOM05D002306 ORTHO05D006484 2.9e-24 115.2 79 70.9
PSO170G5717 Papaver somniferum HOM05D002306 ORTHO05D006484 2.9e-24 115.2 97 64.9
TWI14G0402 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 2.9e-24 115.2 98 64.3
PSO384G3554 Papaver somniferum HOM05D002306 ORTHO05D006484 3.8e-24 114.8 99 60.6
Nitab4.5_0000548g0070 Nicotiana tabacum HOM05D002306 ORTHO05D006484 4.9e-24 114.4 73 82.2
Os02g0305800 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 4.9e-24 114.4 85 64.7
CiPaw.05G197900 Carya illinoinensis HOM05D002306 ORTHO05D006484 6.4e-24 114.0 74 78.4
BcaB01g04219 Brassica carinata HOM05D002306 ORTHO05D006484 8.4e-24 113.6 97 69.1
Rhsim03G0209800 Rhododendron simsii HOM05D002306 ORTHO05D006484 1.1e-23 113.2 74 78.4
Rhsim03G0210000 Rhododendron simsii HOM05D002306 ORTHO05D006484 1.1e-23 113.2 74 78.4
Rhsim03G0210100 Rhododendron simsii HOM05D002306 ORTHO05D006484 1.1e-23 113.2 74 78.4
MBI07_g24774_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D006484 1.4e-23 112.8 93 62.4
PSO782G0677 Papaver somniferum HOM05D002306 ORTHO05D006484 1.9e-23 112.5 97 62.9
VMungo0647G0954 Vigna mungo HOM05D002306 ORTHO05D006484 3.2e-23 111.7 74 77.0
Potri.012G017000 Populus trichocarpa HOM05D002306 ORTHO05D006484 5.5e-23 110.9 69 84.1
unitig_8.g4777 Utricularia gibba HOM05D002306 ORTHO05D006484 5.5e-23 110.9 80 73.8
Sabra15G0009400 Salix brachista HOM05D002306 ORTHO05D006484 7.1e-23 110.5 74 74.3
DCAR_008946 Daucus carota HOM05D002306 ORTHO05D006484 3.5e-22 108.2 74 71.6
arahy.Tifrunner.gnm1.ann1.XWYM96 Arachis hypogaea HOM05D002476 ORTHO05D002652 4.6e-22 107.8 82 69.5
Ciclev10024526m.g Citrus clementina HOM05D002306 ORTHO05D006484 6.0e-22 107.5 80 70.0
HanXRQChr15g0485701 Helianthus annuus HOM05D002306 ORTHO05D006484 7.9e-22 107.1 74 70.3
Lsat_1_v5_gn_9_49781 Lactuca sativa HOM05D002306 ORTHO05D006484 7.9e-22 107.1 88 62.5
Psat6g034920 Pisum sativum HOM05D002306 ORTHO05D006484 7.9e-22 107.1 74 71.6
Duzib068G0867 Durio zibethinus HOM05D002306 ORTHO05D006484 1.8e-21 105.9 98 63.3
Ciclev10023496m.g Citrus clementina HOM05D002306 ORTHO05D006484 3.0e-21 105.1 80 68.8
CSS0043767 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 3.9e-21 104.8 74 73.0
ATR1127G174 Amborella trichopoda HOM05D002306 ORTHO05D006484 8.7e-21 103.6 79 65.8
Lj1g0020624 Lotus japonicus HOM05D002306 ORTHO05D006484 1.9e-20 102.4 73 74.0
ATR0602G202 Amborella trichopoda HOM05D002306 ORTHO05D006484 3.3e-20 101.7 79 64.6
HPP92_020719 Vanilla planifolia HOM05D002306 ORTHO05D006484 3.3e-20 101.7 95 55.8
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 2.4e-18 95.5 73 68.5
Glyma.14G131800 Glycine max HOM05D002306 ORTHO05D006484 1.2e-17 93.2 73 68.5
SMO351G0263 Selaginella moellendorffii HOM05D002306 ORTHO05D006484 1.5e-17 92.8 77 61.0
Mapoly0129s0038 Marchantia polymorpha HOM05D002306 ORTHO05D006484 5.8e-17 90.9 78 57.7
CSS0003606 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 1.0e-16 90.1 78 64.1
Pp3c15_21670 Physcomitrium patens HOM05D002306 ORTHO05D006484 1.3e-16 89.7 77 61.0
AagrBONN_evm.TU.Sc2ySwM_228.5884 Anthoceros agrestis HOM05D002306 ORTHO05D006484 6.5e-16 87.4 86 55.8
Dinv35345 Davidia involucrata HOM05D002306 ORTHO05D006484 6.5e-16 87.4 72 65.3
AagrBONN_evm.TU.Sc2ySwM_228.5887 Anthoceros agrestis HOM05D002306 ORTHO05D006484 7.1e-15 84.0 77 62.3
Ciclev10023204m.g Citrus clementina HOM05D002306 ORTHO05D006484 8.7e-13 77.0 66 56.1
Rhsim09G0206300 Rhododendron simsii HOM05D002306 ORTHO05D006484 8.7e-13 77.0 51 70.6
CBR_g50381 Chara braunii HOM05D002306 ORTHO05D006484 7.4e-12 73.9 77 50.6
Os02g0306250 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 1.3e-11 73.2 54 66.7
Os08g0534400 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 1.3e-11 73.2 54 66.7
Zm00001eb152100 Zea mays HOM05D002306 ORTHO05D006484 4.1e-10 68.2 50 64.0
Glyma.14G130501 Glycine max HOM05D002306 ORTHO05D006484 1.2e-06 56.6 40 67.5


User provided reference genes

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