Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G8610 Aethionema arabicum HOM05D012366 ORTHO05D003332 0.0e+00 1265.4 660 100.0
AL8G26610 Arabidopsis lyrata HOM05D012366 ORTHO05D003332 2.8e-126 456.8 690 47.8
Thhalv10012954m.g Eutrema salsugineum HOM05D012366 ORTHO05D003332 7.3e-119 432.2 660 49.1
Carub.0008s1232 Capsella rubella HOM05D012366 ORTHO05D003332 4.0e-117 426.4 683 46.6
Sp6g14480 Schrenkiella parvula HOM05D012366 ORTHO05D003332 4.6e-113 412.9 658 47.3
AT5G52230 Arabidopsis thaliana HOM05D012366 ORTHO05D003332 7.1e-106 389.0 752 41.9
C09p41640 Brassica napus HOM05D012366 ORTHO05D003332 3.4e-100 370.2 653 45.3
BcaC04g20600 Brassica carinata HOM05D012366 ORTHO05D003332 9.9e-100 368.6 653 45.2
BcaB08g35576 Brassica carinata HOM05D012366 ORTHO05D003332 5.4e-90 336.3 674 42.6
A10p09930 Brassica napus HOM05D012366 ORTHO05D003332 2.7e-89 334.0 645 43.4
BraA10t43073Z Brassica rapa HOM05D012366 ORTHO05D003332 2.3e-88 330.9 645 42.8
THA.LOC104800257 Tarenaya hassleriana HOM05D012366 ORTHO05D003332 3.7e-78 297.0 714 36.6
CARHR265150 Cardamine hirsuta HOM05D012366 ORTHO05D003332 6.9e-61 239.6 575 40.0
Gohir.A12G258600 Gossypium hirsutum HOM05D003520 ORTHO05D003332 5.9e-28 130.2 666 27.2
COL.COLO4_14291 Corchorus olitorius HOM05D003520 ORTHO05D003332 6.5e-27 126.7 723 27.7
Gorai.008G278300 Gossypium raimondii HOM05D003520 ORTHO05D003332 3.6e-25 120.9 667 26.8
CARHR265160 Cardamine hirsuta HOM05D012366 ORTHO05D003332 5.2e-24 117.1 76 73.7
Haze_13728 Corylus avellana HOM05D003520 ORTHO05D003332 1.5e-23 115.5 678 26.4
Cfa008307 Carpinus fangiana HOM05D003520 ORTHO05D003332 4.4e-23 114.0 674 25.8
MD07G1267200 Malus domestica HOM05D003520 ORTHO05D003332 3.8e-19 100.9 677 26.4
Ciclev10004647m.g Citrus clementina HOM05D003520 ORTHO05D003332 1.2e-17 95.9 546 26.7
Gohir.D12G259800 Gossypium hirsutum HOM05D003520 ORTHO05D003332 2.3e-16 91.7 666 26.1
VMungo0464G1159 Vigna mungo HOM05D003520 ORTHO05D003332 1.2e-15 89.4 532 27.4
TWI14G1277 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 4.4e-15 87.4 649 25.7
Thecc.03G174900 Theobroma cacao HOM05D003520 ORTHO05D003332 5.7e-15 87.0 349 30.9
Potri.012G138300 Populus trichocarpa HOM05D003520 ORTHO05D003332 9.8e-15 86.3 698 24.1
QL09p014562 Quercus lobata HOM05D003520 ORTHO05D003332 2.2e-14 85.1 607 24.1
Eucgr.K00243 Eucalyptus grandis HOM05D003520 ORTHO05D003332 8.3e-14 83.2 550 23.8
Potri.015G140100 Populus trichocarpa HOM05D003520 ORTHO05D003332 3.1e-13 81.3 652 24.4
Cpa.g.sc107.38 Carica papaya HOM05D003520 ORTHO05D003332 5.4e-13 80.5 492 25.8
QL12p017888 Quercus lobata HOM05D003520 ORTHO05D003332 5.4e-13 80.5 654 24.0
CsaV3_5G003080 Cucumis sativus L. HOM05D003520 ORTHO05D003332 7.0e-13 80.1 719 23.9
MD01G1199300 Malus domestica HOM05D003520 ORTHO05D003332 1.2e-12 79.3 671 25.6
Sabra15G0150800 Salix brachista HOM05D003520 ORTHO05D003332 1.6e-12 79.0 681 23.8
Manes.14G027150 Manihot esculenta HOM05D003520 ORTHO05D003332 7.8e-12 76.6 185 31.9
Duzib084G0697 Durio zibethinus HOM05D006981 ORTHO05D008719 1.0e-11 76.3 146 38.4
TAR629G1002 Trochodendron aralioides HOM05D003520 ORTHO05D003332 1.7e-11 75.5 301 28.6
CiPaw.04G065200 Carya illinoinensis HOM05D003520 ORTHO05D003332 5.0e-11 73.9 69 52.2
COL.COLO4_34422 Corchorus olitorius HOM05D003520 ORTHO05D003332 6.6e-11 73.6 78 47.4
CiPaw.03G105100 Carya illinoinensis HOM05D003520 ORTHO05D003332 1.1e-10 72.8 698 24.1
Duzib084G0866 Durio zibethinus HOM05D003520 ORTHO05D003332 1.5e-10 72.4 77 46.8
Lsat_1_v5_gn_6_86841 Lactuca sativa HOM05D003520 ORTHO05D003332 1.9e-10 72.0 68 47.1
Thecc.03G274800 Theobroma cacao HOM05D003520 ORTHO05D003332 1.9e-10 72.0 617 24.6
HanXRQChr03g0084491 Helianthus annuus HOM05D003520 ORTHO05D003332 2.5e-10 71.6 80 47.5
Manes.14G027100 Manihot esculenta HOM05D003520 ORTHO05D003332 4.3e-10 70.9 302 26.5
CSS0014139 Camellia sinensis var. sinensis HOM05D003520 ORTHO05D003332 9.5e-10 69.7 64 51.6
PGR142G4230 Punica granatum HOM05D003520 ORTHO05D003332 9.5e-10 69.7 115 39.1
Atru.chr1.477_Atru.chr1.478 Acer truncatum HOM05D003520 ORTHO05D003332 1.2e-09 69.3 641 22.6
vmacro13942 Vaccinium macrocarpon HOM05D003520 ORTHO05D003332 1.2e-09 69.3 69 47.8
Cc02_g03140 Coffea canephora HOM05D003520 ORTHO05D003332 2.8e-09 68.2 103 36.9
Duzib205G1602 Durio zibethinus HOM05D003520 ORTHO05D003332 4.7e-09 67.4 535 25.2
arahy.Tifrunner.gnm1.ann1.D6ZH50 Arachis hypogaea HOM05D003520 ORTHO05D003332 6.1e-09 67.0 659 22.5
Rhsim07G0092500 Rhododendron simsii HOM05D003520 ORTHO05D003332 6.1e-09 67.0 69 47.8
PSO478G3392 Papaver somniferum HOM05D003520 ORTHO05D003332 8.0e-09 66.6 97 41.2
Prupe.5G094800 Prunus persica HOM05D003520 ORTHO05D003332 8.0e-09 66.6 692 23.4
Psat7g035760 Pisum sativum HOM05D003520 ORTHO05D003332 1.0e-08 66.2 74 48.6
Phvul.002G287000 Phaseolus vulgaris HOM05D003520 ORTHO05D003332 1.4e-08 65.9 295 27.8
MELO3C006898.2 Cucumis melo HOM05D003520 ORTHO05D003332 1.8e-08 65.5 156 34.0
RcHm_v2.0_Chr1g0377031 Rosa chinensis HOM05D016299 ORTHO05D003332 1.8e-08 65.5 131 36.6
ECA240G0038 Erigeron canadensis HOM05D003520 ORTHO05D003332 2.3e-08 65.1 56 55.4
PSO782G5503 Papaver somniferum HOM05D003520 ORTHO05D003332 2.3e-08 65.1 97 40.2
SGA_v2.0_scaffold385G50464 Striga asiatica HOM05D003520 ORTHO05D003332 2.3e-08 65.1 59 50.8
CiPaw.11G138700 Carya illinoinensis HOM05D003520 ORTHO05D003332 3.1e-08 64.7 637 23.4
HanXRQChr09g0253501 Helianthus annuus HOM05D003520 ORTHO05D003332 3.1e-08 64.7 79 41.8
Lsat_1_v5_gn_6_86801 Lactuca sativa HOM05D003520 ORTHO05D003332 3.1e-08 64.7 73 43.8
Lj2C195G2 Lonicera japonica HOM05D003520 ORTHO05D003332 3.1e-08 64.7 94 41.5
FAN08G2904 Fragaria x ananassa HOM05D003520 ORTHO05D003332 4.0e-08 64.3 707 21.5
AUR62017242 Chenopodium quinoa HOM05D003520 ORTHO05D003332 5.2e-08 63.9 324 27.8
FAN01G0032 Fragaria x ananassa HOM05D016299 ORTHO05D003332 5.2e-08 63.9 127 38.6
FAN10G1120 Fragaria x ananassa HOM05D016299 ORTHO05D003332 6.8e-08 63.5 130 35.4
AUR62010600 Chenopodium quinoa HOM05D003520 ORTHO05D003332 8.9e-08 63.2 331 27.2
FAN03G2536 Fragaria x ananassa HOM05D016299 ORTHO05D003332 8.9e-08 63.2 123 37.4
FAN03G3032 Fragaria x ananassa HOM05D016299 ORTHO05D003332 8.9e-08 63.2 123 37.4
Hma1.2p1_0514F.1_g169820 Hydrangea macrophylla HOM05D003520 ORTHO05D003332 8.9e-08 63.2 70 44.3
Lj2g0020727 Lotus japonicus HOM05D003520 ORTHO05D003332 8.9e-08 63.2 202 32.7
Migut.E01117 Erythranthe guttata HOM05D003520 ORTHO05D003332 1.2e-07 62.8 74 43.2
Lj8C25T11 Lonicera japonica HOM05D003520 ORTHO05D003332 1.2e-07 62.8 116 33.6
MD14G1098200 Malus domestica HOM05D003520 ORTHO05D003332 1.2e-07 62.8 349 29.5
TPR.G12816 Trifolium pratense HOM05D003520 ORTHO05D003332 1.5e-07 62.4 685 23.8
FvH4_7g29290 Fragaria vesca HOM05D016299 ORTHO05D003332 3.4e-07 61.2 171 32.2
FAN06G4083 Fragaria x ananassa HOM05D016299 ORTHO05D003332 3.4e-07 61.2 171 32.2
FAN06G4500 Fragaria x ananassa HOM05D016299 ORTHO05D003332 3.4e-07 61.2 171 32.2
ClCG01G002970 Citrullus lanatus HOM05D003520 ORTHO05D003332 5.8e-07 60.5 711 22.9
HanXRQChr15g0495611 Helianthus annuus HOM05D003520 ORTHO05D003332 5.8e-07 60.5 94 37.2
Cfa012135 Carpinus fangiana HOM05D003520 ORTHO05D003332 7.5e-07 60.1 620 23.1
Glyma.05G205100 Glycine max HOM05D003520 ORTHO05D003332 9.8e-07 59.7 380 23.2
GSVIVG01019812001 Vitis vinifera HOM05D000016 ORTHO05D000109 9.8e-07 59.7 190 31.1
SGA_v2.0_scaffold144G35962 Striga asiatica HOM05D003520 ORTHO05D003332 1.3e-06 59.3 187 28.3
MBI17_g21053_MAGBIO Magnolia biondii HOM05D003520 ORTHO05D003332 1.7e-06 58.9 59 44.1
Nn6g33544 Nelumbo nucifera HOM05D003520 ORTHO05D003332 1.7e-06 58.9 124 30.6
Nitab4.5_0001508g0010 Nicotiana tabacum HOM05D012625 ORTHO05D003332 1.7e-06 58.9 52 51.9
GSVIVG01010547001 Vitis vinifera HOM05D003520 ORTHO05D003332 1.7e-06 58.9 308 26.9
EL10Ac5g12763 Beta vulgaris HOM05D003520 ORTHO05D003332 2.2e-06 58.5 64 40.6
Gohir.D11G021400 Gossypium hirsutum HOM05D003520 ORTHO05D003332 2.2e-06 58.5 609 23.8
Zm00001eb048990 Zea mays HOM05D003520 ORTHO05D003332 2.2e-06 58.5 62 41.9
ClCG05G007960 Citrullus lanatus HOM05D003520 ORTHO05D003332 2.9e-06 58.2 662 24.8
Lalb_Chr16g0389811 Lupinus albus HOM05D003520 ORTHO05D003332 2.9e-06 58.2 121 35.5
MELO3C005647.2 Cucumis melo HOM05D003520 ORTHO05D003332 4.9e-06 57.4 103 37.9
Zm00001eb338110 Zea mays HOM05D003520 ORTHO05D003332 4.9e-06 57.4 62 40.3
Zm00001eb376080 Zea mays HOM05D003520 ORTHO05D003332 4.9e-06 57.4 62 40.3
Gohir.A11G021700 Gossypium hirsutum HOM05D003520 ORTHO05D003332 6.4e-06 57.0 248 28.2
Gorai.007G022700 Gossypium raimondii HOM05D003520 ORTHO05D003332 6.4e-06 57.0 612 23.4


User provided reference genes

Program Settings