Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G80 Aethionema arabicum HOM05D006953 ORTHO05D008556 2.9e-41 171.4 84 100.0
AL3G24240 Arabidopsis lyrata HOM05D006953 ORTHO05D008556 5.8e-13 77.4 38 97.4
AT3G12587 Arabidopsis thaliana HOM05D006953 ORTHO05D008556 5.8e-13 77.4 38 97.4
Carub.0003s1193 Capsella rubella HOM05D006953 ORTHO05D008556 5.8e-13 77.4 38 97.4
THA.LOC104799351 Tarenaya hassleriana HOM05D006953 ORTHO05D008556 1.3e-12 76.3 38 94.7
CARHR087090 Cardamine hirsuta HOM05D006953 ORTHO05D008556 1.7e-12 75.9 38 94.7
Eucgr.K03148 Eucalyptus grandis HOM05D006953 ORTHO05D008556 3.8e-12 74.7 39 87.2
Thhalv10021851m.g Eutrema salsugineum HOM05D006953 ORTHO05D008556 6.4e-12 73.9 38 92.1
COL.COLO4_14982 Corchorus olitorius HOM05D006953 ORTHO05D008556 8.4e-12 73.6 40 85.0
Gohir.A13G019700 Gossypium hirsutum HOM05D006953 ORTHO05D008556 1.4e-11 72.8 62 61.3
vmacro20134 Vaccinium macrocarpon HOM05D006953 ORTHO05D008556 1.4e-11 72.8 55 69.1
BraA03t12923Z Brassica rapa HOM05D006953 ORTHO05D008556 1.9e-11 72.4 38 89.5
CAN.G97.41 Capsicum annuum HOM05D006953 ORTHO05D008556 1.9e-11 72.4 43 76.7
PSO339G5949 Papaver somniferum HOM05D006953 ORTHO05D008556 1.9e-11 72.4 38 89.5
TWI53G1308 Tripterygium wilfordii HOM05D006953 ORTHO05D008556 1.9e-11 72.4 38 89.5
PSO801G0549 Papaver somniferum HOM05D006953 ORTHO05D008556 2.4e-11 72.0 38 89.5
Actinidia13138 Actinidia chinensis HOM05D006953 ORTHO05D008556 3.2e-11 71.6 39 84.6
Hund17592 Selenicereus undatus HOM05D006953 ORTHO05D008556 3.2e-11 71.6 43 74.4
CANSAT56G0829 Cannabis sativa HOM05D006953 ORTHO05D008556 4.1e-11 71.2 38 86.8
CANSAT56G2326 Cannabis sativa HOM05D006953 ORTHO05D008556 4.1e-11 71.2 38 86.8
SGA_v2.0_scaffold27G11723 Striga asiatica HOM05D006953 ORTHO05D008556 4.1e-11 71.2 38 84.2
BcaC01g04017 Brassica carinata HOM05D006953 ORTHO05D008556 5.4e-11 70.9 38 86.8
BolC3t16848H Brassica oleracea HOM05D006953 ORTHO05D008556 5.4e-11 70.9 38 86.8
Migut.A00495 Erythranthe guttata HOM05D006953 ORTHO05D008556 5.4e-11 70.9 38 86.8
Manes.10G032302 Manihot esculenta HOM05D006953 ORTHO05D008556 5.4e-11 70.9 44 75.0
Cc06_g02830 Coffea canephora HOM05D006953 ORTHO05D008556 7.1e-11 70.5 38 86.8
Duzib114G0949 Durio zibethinus HOM05D006953 ORTHO05D008556 7.1e-11 70.5 38 86.8
Duzib128G1377 Durio zibethinus HOM05D006953 ORTHO05D008556 7.1e-11 70.5 38 86.8
Manes.09G090100 Manihot esculenta HOM05D006953 ORTHO05D008556 7.1e-11 70.5 38 86.8
Nn1g01406 Nelumbo nucifera HOM05D006953 ORTHO05D008556 7.1e-11 70.5 61 65.6
TWI74G1054 Tripterygium wilfordii HOM05D006953 ORTHO05D008556 7.1e-11 70.5 38 86.8
BcaB04g21053 Brassica carinata HOM05D004065 ORTHO05D004806 9.2e-11 70.1 39 84.6
CiPaw.10G144400 Carya illinoinensis HOM05D006953 ORTHO05D008556 9.2e-11 70.1 38 84.2
Gohir.D10G225201 Gossypium hirsutum HOM05D006953 ORTHO05D008556 9.2e-11 70.1 39 82.1
Gorai.011G256200 Gossypium raimondii HOM05D006953 ORTHO05D008556 9.2e-11 70.1 39 82.1
GSVIVG01034200001 Vitis vinifera HOM05D006953 ORTHO05D008556 9.2e-11 70.1 41 80.5
Gohir.A10G216201 Gossypium hirsutum HOM05D006953 ORTHO05D008556 1.2e-10 69.7 39 79.5
Medtr7g099720 Medicago truncatula HOM05D006953 ORTHO05D008556 1.2e-10 69.7 39 79.5
Thecc.05G042200 Theobroma cacao HOM05D006953 ORTHO05D008556 1.2e-10 69.7 38 84.2
BNapus_Darmor_BZH_scaffold_149p00110 Brassica napus HOM05D006953 ORTHO05D008556 1.6e-10 69.3 38 86.8
C01p52590 Brassica napus HOM05D006953 ORTHO05D008556 1.6e-10 69.3 38 86.8
BolC1t05198H Brassica oleracea HOM05D006953 ORTHO05D008556 1.6e-10 69.3 38 86.8
BolC5t34201H Brassica oleracea HOM05D006953 ORTHO05D008556 1.6e-10 69.3 38 84.2
BraA01t04125Z Brassica rapa HOM05D006953 ORTHO05D008556 1.6e-10 69.3 38 86.8
Duzib106G0684 Durio zibethinus HOM05D006953 ORTHO05D008556 1.6e-10 69.3 38 84.2
Gohir.D13G020300 Gossypium hirsutum HOM05D006953 ORTHO05D008556 1.6e-10 69.3 38 84.2
Prupe.6G252200 Prunus persica HOM05D006953 ORTHO05D008556 1.6e-10 69.3 38 84.2
Thecc.10G046100 Theobroma cacao HOM05D006953 ORTHO05D008556 1.6e-10 69.3 38 84.2
MELO3C030371.2 Cucumis melo HOM05D006953 ORTHO05D008556 2.1e-10 68.9 80 47.5
Gohir.A09G157400 Gossypium hirsutum HOM05D006953 ORTHO05D008556 2.1e-10 68.9 38 84.2
Gohir.D09G152700 Gossypium hirsutum HOM05D006953 ORTHO05D008556 2.1e-10 68.9 38 84.2
Gorai.006G174200 Gossypium raimondii HOM05D006953 ORTHO05D008556 2.1e-10 68.9 38 84.2
Manes.08G128230 Manihot esculenta HOM05D006953 ORTHO05D008556 2.1e-10 68.9 38 84.2
Potri.008G053200 Populus trichocarpa HOM05D006953 ORTHO05D008556 2.1e-10 68.9 38 84.2
Potri.010G207100 Populus trichocarpa HOM05D006953 ORTHO05D008556 2.1e-10 68.9 38 84.2
PGR044G1841 Punica granatum HOM05D006953 ORTHO05D008556 2.1e-10 68.9 38 84.2
FAN09G0966 Fragaria x ananassa HOM05D006953 ORTHO05D008556 2.7e-10 68.6 51 68.6
Glyma.13G258200 Glycine max HOM05D006953 ORTHO05D008556 2.7e-10 68.6 38 89.5
Nn6g34196 Nelumbo nucifera HOM05D006953 ORTHO05D008556 2.7e-10 68.6 40 80.0
Os07g0620500 Oryza sativa ssp. japonica HOM05D006953 ORTHO05D008556 2.7e-10 68.6 40 77.5
PSO384G5050 Papaver somniferum HOM05D006953 ORTHO05D008556 2.7e-10 68.6 38 84.2
Duzib106G1537 Durio zibethinus HOM05D006953 ORTHO05D008556 3.5e-10 68.2 38 81.6
FAN14G5692 Fragaria x ananassa HOM05D006953 ORTHO05D008556 3.5e-10 68.2 35 88.6
Actinidia02894 Actinidia chinensis HOM05D005343 ORTHO05D008556 4.6e-10 67.8 39 79.5
CSS0025790 Camellia sinensis var. sinensis HOM05D006953 ORTHO05D008556 4.6e-10 67.8 40 82.5
BcaB01g06189 Brassica carinata HOM05D001365 ORTHO05D001291 7.8e-10 67.0 61 57.4
Glyma.03G171300 Glycine max HOM05D006953 ORTHO05D008556 7.8e-10 67.0 38 78.9
Glyma.19G172400 Glycine max HOM05D006953 ORTHO05D008556 7.8e-10 67.0 38 78.9
Phvul.005G001900 Phaseolus vulgaris HOM05D006953 ORTHO05D008556 7.8e-10 67.0 38 78.9
Potri.008G053300 Populus trichocarpa HOM05D006953 ORTHO05D008556 7.8e-10 67.0 38 81.6
THA.LOC104816283 Tarenaya hassleriana HOM05D006953 ORTHO05D008556 7.8e-10 67.0 38 81.6
COL.COLO4_14834 Corchorus olitorius HOM05D000248 ORTHO05D000146 1.0e-09 66.6 38 81.6
MD04G1125200 Malus domestica HOM05D006953 ORTHO05D008556 1.0e-09 66.6 50 62.0
ECA232G3005 Erigeron canadensis HOM05D006953 ORTHO05D008556 1.3e-09 66.2 37 86.5
Gohir.A01G223600 Gossypium hirsutum HOM05D006953 ORTHO05D008556 1.3e-09 66.2 35 85.7
Gohir.D01G212800 Gossypium hirsutum HOM05D006953 ORTHO05D008556 1.3e-09 66.2 35 85.7
Gorai.002G258800 Gossypium raimondii HOM05D006953 ORTHO05D008556 1.3e-09 66.2 35 85.7
PGR142G3972 Punica granatum HOM05D006953 ORTHO05D008556 1.3e-09 66.2 38 78.9
BcaB01g06171 Brassica carinata HOM05D001365 ORTHO05D001291 1.7e-09 65.9 36 80.6
A03p00780 Brassica napus HOM05D006953 ORTHO05D008556 1.7e-09 65.9 36 80.6
C03p01030 Brassica napus HOM05D006953 ORTHO05D008556 1.7e-09 65.9 36 80.6
BolC3t12664H Brassica oleracea HOM05D006953 ORTHO05D008556 1.7e-09 65.9 36 80.6
BraA03t09462Z Brassica rapa HOM05D001365 ORTHO05D001291 1.7e-09 65.9 36 80.6
Phvul.006G203200 Phaseolus vulgaris HOM05D006953 ORTHO05D008556 1.7e-09 65.9 38 86.8
Thhalv10021844m.g Eutrema salsugineum HOM05D006953 ORTHO05D008556 2.3e-09 65.5 36 80.6
CARHR083870 Cardamine hirsuta HOM05D006953 ORTHO05D008556 3.0e-09 65.1 65 52.3
AL3G20640 Arabidopsis lyrata HOM05D006953 ORTHO05D008556 3.9e-09 64.7 35 82.9
AT3G09455 Arabidopsis thaliana HOM05D006953 ORTHO05D008556 3.9e-09 64.7 35 82.9
BolC9t60140H Brassica oleracea HOM05D006953 ORTHO05D008556 3.9e-09 64.7 38 76.3
Carub.0003s0856 Capsella rubella HOM05D006953 ORTHO05D008556 3.9e-09 64.7 35 82.9
Ciclev10033290m.g Citrus clementina HOM05D006953 ORTHO05D008556 3.9e-09 64.7 38 78.9
CANSAT35G0750 Cannabis sativa HOM05D006953 ORTHO05D008556 5.1e-09 64.3 38 78.9
Mapoly0086s0029 Marchantia polymorpha HOM05D006953 ORTHO05D008556 5.1e-09 64.3 38 76.3
Nn3g21523 Nelumbo nucifera HOM05D006953 ORTHO05D008556 5.1e-09 64.3 35 74.3
TWI15G0277 Tripterygium wilfordii HOM05D006953 ORTHO05D008556 6.6e-09 63.9 38 76.3
C04p60710 Brassica napus HOM05D006953 ORTHO05D008556 8.7e-09 63.5 35 80.0
AL6G11750 Arabidopsis lyrata HOM05D006953 ORTHO05D008556 1.1e-08 63.2 35 77.1
arahy.Tifrunner.gnm1.ann1.NW0172 Arachis hypogaea HOM05D003758 ORTHO05D008556 1.1e-08 63.2 37 75.7
FAN01G1395 Fragaria x ananassa HOM05D006953 ORTHO05D008556 1.1e-08 63.2 48 66.7
FAN01G2049 Fragaria x ananassa HOM05D006953 ORTHO05D008556 1.1e-08 63.2 48 66.7
FAN06G2124 Fragaria x ananassa HOM05D006953 ORTHO05D008556 1.1e-08 63.2 48 66.7
FAN06G2412 Fragaria x ananassa HOM05D006953 ORTHO05D008556 1.1e-08 63.2 48 66.7
AT5G02502 Arabidopsis thaliana HOM05D006953 ORTHO05D008556 1.5e-08 62.8 35 77.1
Os03g0392050 Oryza sativa ssp. japonica HOM05D006953 ORTHO05D008556 1.5e-08 62.8 38 76.3
RcHm_v2.0_Chr1g0366451 Rosa chinensis HOM05D006953 ORTHO05D008556 1.5e-08 62.8 35 82.9
BolC4t27560H Brassica oleracea HOM05D006953 ORTHO05D008556 2.5e-08 62.0 35 77.1
MD07G1195400 Malus domestica HOM05D006953 ORTHO05D008556 2.5e-08 62.0 39 74.4
EL10Ac8g18952 Beta vulgaris HOM05D006953 ORTHO05D008556 3.3e-08 61.6 33 78.8
ECA236G4263 Erigeron canadensis HOM05D006953 ORTHO05D008556 3.3e-08 61.6 53 60.4
FAN10G2372 Fragaria x ananassa HOM05D006953 ORTHO05D008556 3.3e-08 61.6 38 76.3
FAN03G0258 Fragaria x ananassa HOM05D006953 ORTHO05D008556 4.3e-08 61.2 38 76.3
Glyma.15G057100 Glycine max HOM05D006953 ORTHO05D008556 4.3e-08 61.2 35 82.9
TWI63G1588 Tripterygium wilfordii HOM05D006953 ORTHO05D008556 1.2e-07 59.7 38 71.1
Pp3c21_16500 Physcomitrium patens HOM05D006953 ORTHO05D008556 2.8e-07 58.5 38 68.4
BraA10t45347Z Brassica rapa HOM05D006953 ORTHO05D008556 3.6e-07 58.2 35 74.3
SEGI_27928 Sequoiadendron giganteum HOM05D006953 ORTHO05D008556 3.6e-07 58.2 39 66.7
BraA09t36404Z Brassica rapa HOM05D006953 ORTHO05D008556 1.1e-06 56.6 30 83.3
MD01G1125600 Malus domestica HOM05D006953 ORTHO05D008556 6.9e-06 53.9 42 57.1


User provided reference genes

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