Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G16760 Aethionema arabicum HOM05D002888 ORTHO05D003321 6.6e-193 677.2 334 100.0
Sp6g33040 Schrenkiella parvula HOM05D002888 ORTHO05D003321 7.0e-110 401.4 343 62.4
A10p27190 Brassica napus HOM05D002888 ORTHO05D003321 3.0e-105 386.0 356 57.9
BraA10t44769Z Brassica rapa HOM05D002888 ORTHO05D003321 3.0e-105 386.0 356 57.9
BcaB08g37110 Brassica carinata HOM05D002888 ORTHO05D003321 8.8e-105 384.4 348 59.2
Carub.0006s0888 Capsella rubella HOM05D002888 ORTHO05D003321 8.8e-105 384.4 348 59.5
BcaC04g19306 Brassica carinata HOM05D002888 ORTHO05D003321 2.6e-104 382.9 356 56.5
Thhalv10013869m.g Eutrema salsugineum HOM05D002888 ORTHO05D003321 1.1e-102 377.5 342 59.1
AT5G10410 Arabidopsis thaliana HOM05D002888 ORTHO05D003321 2.0e-101 373.2 339 58.1
C09p67000 Brassica napus HOM05D002888 ORTHO05D003321 3.5e-101 372.5 346 56.6
BolC9t59473H Brassica oleracea HOM05D002888 ORTHO05D003321 3.5e-101 372.5 346 56.6
AL6G20910 Arabidopsis lyrata HOM05D002888 ORTHO05D003321 5.0e-100 368.6 297 63.6
CARHR202890 Cardamine hirsuta HOM05D002888 ORTHO05D003321 1.6e-98 363.6 357 53.8
Aa31LG3G16770 Aethionema arabicum HOM05D002888 ORTHO05D003321 8.8e-97 357.8 341 56.0
THA.LOC104798791 Tarenaya hassleriana HOM05D002888 ORTHO05D003321 1.5e-64 250.8 296 52.0
THA.LOC104801687 Tarenaya hassleriana HOM05D002888 ORTHO05D003321 2.4e-54 216.9 304 47.7
Carub.0002s0123 Capsella rubella HOM05D002888 ORTHO05D013752 7.3e-51 205.3 300 44.3
BcaC03g18331 Brassica carinata HOM05D002888 ORTHO05D013752 1.2e-50 204.5 294 45.6
C02p64060 Brassica napus HOM05D002888 ORTHO05D013752 1.2e-50 204.5 303 44.9
AL8G42940 Arabidopsis lyrata HOM05D002888 ORTHO05D013752 1.1e-49 201.4 295 44.1
Sp2g28450 Schrenkiella parvula HOM05D002888 ORTHO05D013752 1.5e-48 197.6 295 43.4
Thhalv10005617m.g Eutrema salsugineum HOM05D002888 ORTHO05D013752 1.7e-47 194.1 295 44.1
AT5G65370 Arabidopsis thaliana HOM05D002888 ORTHO05D013752 1.4e-46 191.0 295 44.1
A02p43910 Brassica napus HOM05D002888 ORTHO05D013752 7.1e-46 188.7 293 43.3
BraA02t09314Z Brassica rapa HOM05D002888 ORTHO05D013752 7.1e-46 188.7 293 43.3
A08p20560 Brassica napus HOM05D002888 ORTHO05D013752 4.8e-42 176.0 297 40.1
BcaB03g12525 Brassica carinata HOM05D002888 ORTHO05D013752 8.1e-42 175.3 296 40.9
BcaC07g38269 Brassica carinata HOM05D002888 ORTHO05D013752 3.8e-39 166.4 297 38.7
BraA08t34012Z Brassica rapa HOM05D002888 ORTHO05D013752 6.4e-39 165.6 279 39.8
TWI53G0860 Tripterygium wilfordii HOM05D002888 ORTHO05D003321 4.6e-29 132.9 290 35.2
Cpa.g.sc55.58 Carica papaya HOM05D002888 ORTHO05D003321 1.3e-28 131.3 294 34.0
CiPaw.01G048400 Carya illinoinensis HOM05D002888 ORTHO05D003321 1.6e-26 124.4 294 31.3
Duzib147G0504 Durio zibethinus HOM05D002888 ORTHO05D003321 1.6e-26 124.4 294 33.0
Haze_15043 Corylus avellana HOM05D002888 ORTHO05D003321 2.1e-26 124.0 297 33.3
QL06p047786 Quercus lobata HOM05D002888 ORTHO05D003321 2.1e-26 124.0 295 31.2
RcHm_v2.0_Chr2g0112101 Rosa chinensis HOM05D002888 ORTHO05D003321 3.7e-26 123.2 302 31.8
CsaV3_4G009090 Cucumis sativus L. HOM05D002888 ORTHO05D003321 4.8e-26 122.9 308 31.5
A01p01010 Brassica napus HOM05D002888 ORTHO05D003321 1.4e-25 121.3 298 32.2
BraA01t00099Z Brassica rapa HOM05D002888 ORTHO05D003321 1.4e-25 121.3 298 32.2
CiPaw.02G022400 Carya illinoinensis HOM05D002888 ORTHO05D003321 1.4e-25 121.3 294 31.0
Gohir.A10G087400 Gossypium hirsutum HOM05D002888 ORTHO05D003321 1.4e-25 121.3 294 32.3
Duzib187G0880 Durio zibethinus HOM05D002888 ORTHO05D003321 1.8e-25 120.9 294 34.0
Duzib264G0538 Durio zibethinus HOM05D002888 ORTHO05D003321 4.0e-25 119.8 290 33.1
ClCG10G008340 Citrullus lanatus HOM05D002888 ORTHO05D003321 5.3e-25 119.4 301 31.6
Gorai.011G110500 Gossypium raimondii HOM05D002888 ORTHO05D003321 5.3e-25 119.4 294 32.0
C08p10160 Brassica napus HOM05D002888 ORTHO05D013752 6.9e-25 119.0 291 32.6
BolC8t48695H Brassica oleracea HOM05D002888 ORTHO05D013752 6.9e-25 119.0 291 32.6
Sp7g35770 Schrenkiella parvula HOM05D002888 ORTHO05D003321 6.9e-25 119.0 294 32.0
Thecc.01G093800 Theobroma cacao HOM05D002888 ORTHO05D003321 1.2e-24 118.2 294 33.0
C01p01130 Brassica napus HOM05D002888 ORTHO05D003321 1.5e-24 117.9 298 31.9
BolC1t00111H Brassica oleracea HOM05D002888 ORTHO05D003321 1.5e-24 117.9 298 31.9
MELO3C019004.2 Cucumis melo HOM05D002888 ORTHO05D003321 1.5e-24 117.9 300 32.0
FAN26G0322 Fragaria x ananassa HOM05D002888 ORTHO05D003321 3.4e-24 116.7 304 32.6
Gohir.D10G100800 Gossypium hirsutum HOM05D002888 ORTHO05D003321 3.4e-24 116.7 294 32.0
BcaNung00942 Brassica carinata HOM05D002888 ORTHO05D003321 4.5e-24 116.3 307 32.2
FAN28G2738 Fragaria x ananassa HOM05D002888 ORTHO05D003321 4.5e-24 116.3 304 32.6
AUR62027189 Chenopodium quinoa HOM05D002888 ORTHO05D003321 7.6e-24 115.5 298 29.9
FAN23G2029 Fragaria x ananassa HOM05D002888 ORTHO05D003321 7.6e-24 115.5 307 32.2
AL7G12440 Arabidopsis lyrata HOM05D002888 ORTHO05D003321 1.3e-23 114.8 293 30.0
AT4G40080 Arabidopsis thaliana HOM05D002888 ORTHO05D003321 1.3e-23 114.8 298 30.2
Cfa004368 Carpinus fangiana HOM05D002888 ORTHO05D003321 1.3e-23 114.8 297 32.3
FAN19G2862 Fragaria x ananassa HOM05D002888 ORTHO05D003321 1.3e-23 114.8 304 32.2
Atru.chr3.1322 Acer truncatum HOM05D002888 ORTHO05D003321 2.9e-23 113.6 266 33.1
BcaNung00940 Brassica carinata HOM05D002888 ORTHO05D003321 3.8e-23 113.2 298 31.2
Carub.0007s0207 Capsella rubella HOM05D002888 ORTHO05D003321 4.9e-23 112.8 298 30.5
A08p23140 Brassica napus HOM05D002888 ORTHO05D003321 8.4e-23 112.1 297 31.3
FvH4_1g20100 Fragaria vesca HOM05D002888 ORTHO05D003321 1.1e-22 111.7 281 32.7
Aqoxy6G00686 Aquilegia oxysepala HOM05D002888 ORTHO05D003321 1.4e-22 111.3 292 32.2
EL10Ac6g14804 Beta vulgaris HOM05D002888 ORTHO05D003321 1.4e-22 111.3 337 28.8
Thhalv10025543m.g Eutrema salsugineum HOM05D002888 ORTHO05D003321 2.5e-22 110.5 292 30.5
Sopen11g005150 Solanum pennellii HOM05D002888 ORTHO05D003321 2.5e-22 110.5 334 29.6
BraA08t34272Z Brassica rapa HOM05D002888 ORTHO05D003321 3.2e-22 110.2 297 31.0
Gohir.A11G051000 Gossypium hirsutum HOM05D002888 ORTHO05D003321 7.1e-22 109.0 293 31.7
CARHR279340 Cardamine hirsuta HOM05D002888 ORTHO05D003321 9.3e-22 108.6 120 49.2
Prupe.6G195400 Prunus persica HOM05D002888 ORTHO05D003321 1.2e-21 108.2 303 31.0
Sed0008018 Sechium edule HOM05D002888 ORTHO05D003321 1.2e-21 108.2 293 32.4
Solyc11g010370.1 Solanum lycopersicum HOM05D002888 ORTHO05D003321 2.1e-21 107.5 334 29.3
GSVIVG01007072001 Vitis vinifera HOM05D002888 ORTHO05D003321 6.0e-21 105.9 299 30.4
TPR.G30527 Trifolium pratense HOM05D000542 ORTHO05D003321 7.9e-21 105.5 279 31.5
Cc07_g14430 Coffea canephora HOM05D002888 ORTHO05D003321 1.0e-20 105.1 302 29.1
Dinv13633 Davidia involucrata HOM05D002888 ORTHO05D003321 2.3e-20 104.0 301 29.9
Medtr3g086670 Medicago truncatula HOM05D002888 ORTHO05D003321 3.9e-20 103.2 279 31.2
MD15G1316600 Malus domestica HOM05D002888 ORTHO05D003321 5.1e-20 102.8 305 29.8
BolC3t20115H Brassica oleracea HOM05D002888 ORTHO05D003321 6.7e-20 102.4 298 31.2
Nn5g29964 Nelumbo nucifera HOM05D002888 ORTHO05D003321 1.1e-19 101.7 300 29.0
Gohir.D11G054400 Gossypium hirsutum HOM05D002888 ORTHO05D003321 1.5e-19 101.3 291 29.9
Psat5g090920 Pisum sativum HOM05D002888 ORTHO05D003321 1.5e-19 101.3 302 30.8
Ca_16030_v3 Cicer arietinum L. HOM05D002888 ORTHO05D003321 3.3e-19 100.1 315 28.6
Oeu000873.1 Olea europaea HOM05D002888 ORTHO05D003321 3.3e-19 100.1 293 28.7
Ah.02g125790 Amaranthus hybridus HOM05D002888 ORTHO05D003321 4.3e-19 99.8 295 28.1
Oeu031107.1 Olea europaea HOM05D002888 ORTHO05D003321 5.7e-19 99.4 296 28.0
TAR628G0527 Trochodendron aralioides HOM05D002888 ORTHO05D003321 9.6e-19 98.6 292 29.8
Aa31LG6G15130 Aethionema arabicum HOM05D002888 ORTHO05D003321 1.3e-18 98.2 296 28.4
CANSAT01G2511 Cannabis sativa HOM05D002888 ORTHO05D003321 1.6e-18 97.8 301 30.6
Ca_25141_v3 Cicer arietinum L. HOM05D002888 ORTHO05D003321 2.1e-18 97.4 305 30.2
Ca_30634_v3 Cicer arietinum L. HOM05D002888 ORTHO05D003321 2.1e-18 97.4 305 30.2
PGSC0003DMG400016215 Solanum tuberosum HOM05D002888 ORTHO05D003321 2.8e-18 97.1 334 26.9
CSS0026892 Camellia sinensis var. sinensis HOM05D002888 ORTHO05D003321 3.7e-18 96.7 305 30.2
Dinv42661 Davidia involucrata HOM05D002888 ORTHO05D003321 3.7e-18 96.7 310 29.4
Actinidia06530 Actinidia chinensis HOM05D002888 ORTHO05D003321 4.8e-18 96.3 300 28.7
COL.COLO4_27312 Corchorus olitorius HOM05D002888 ORTHO05D003321 6.3e-18 95.9 288 29.2
Glyma.18G014200 Glycine max HOM05D002888 ORTHO05D003321 6.3e-18 95.9 277 31.4
Lj2P538T22 Lonicera japonica HOM05D002888 ORTHO05D003321 8.2e-18 95.5 290 29.7
Nitab4.5_0001078g0140 Nicotiana tabacum HOM05D002888 ORTHO05D003321 8.2e-18 95.5 298 32.2
HanXRQChr14g0445001 Helianthus annuus HOM05D002888 ORTHO05D003321 1.1e-17 95.1 298 29.2
Nitab4.5_0007011g0010 Nicotiana tabacum HOM05D002888 ORTHO05D003321 1.1e-17 95.1 297 31.3
TWI74G0173 Tripterygium wilfordii HOM05D002888 ORTHO05D003321 1.1e-17 95.1 286 27.3
Glyma.11G242900 Glycine max HOM05D002888 ORTHO05D003321 1.4e-17 94.7 276 30.4
TPR.G6366 Trifolium pratense HOM05D002888 ORTHO05D003321 1.4e-17 94.7 322 28.6
Rhsim07G0206000 Rhododendron simsii HOM05D002888 ORTHO05D003321 1.8e-17 94.4 295 30.5
CDE03G0472 Ceratophyllum demersum HOM05D002888 ORTHO05D003321 2.4e-17 94.0 308 28.6
PSO675G6142 Papaver somniferum HOM05D002888 ORTHO05D003321 2.4e-17 94.0 347 25.6
Lsat_1_v5_gn_6_105921 Lactuca sativa HOM05D002888 ORTHO05D003321 3.1e-17 93.6 305 28.5
Rhsim07G0207000 Rhododendron simsii HOM05D002888 ORTHO05D003321 3.1e-17 93.6 293 30.7
CAN.G1173.10 Capsicum annuum HOM05D002888 ORTHO05D003321 4.1e-17 93.2 305 31.1
Lsat_1_v5_gn_2_65861 Lactuca sativa HOM05D002888 ORTHO05D003321 4.1e-17 93.2 294 27.9
Sc03g0000200 Simmondsia chinensis HOM05D002888 ORTHO05D003321 5.3e-17 92.8 296 28.7
Sc03g0000230 Simmondsia chinensis HOM05D002888 ORTHO05D003321 5.3e-17 92.8 296 28.7
Dinv20800 Davidia involucrata HOM05D002888 ORTHO05D003321 6.9e-17 92.4 301 30.2
Oeu002153.1 Olea europaea HOM05D002888 ORTHO05D003321 6.9e-17 92.4 294 27.6
Cfa017907 Carpinus fangiana HOM05D002888 ORTHO05D003321 9.0e-17 92.0 304 28.6
HanXRQChr10g0314731 Helianthus annuus HOM05D002888 ORTHO05D003321 9.0e-17 92.0 287 27.2
MBI06_g18771_MAGBIO Magnolia biondii HOM05D002888 ORTHO05D003321 1.2e-16 91.7 281 29.9
MD08G1190800 Malus domestica HOM05D002888 ORTHO05D003321 1.5e-16 91.3 294 26.5
PGR102G0243 Punica granatum HOM05D002888 ORTHO05D003321 1.5e-16 91.3 295 26.8
Medtr3g099670 Medicago truncatula HOM05D002888 ORTHO05D003321 2.0e-16 90.9 301 28.9
PGSC0003DMG400002134 Solanum tuberosum HOM05D002888 ORTHO05D003321 3.4e-16 90.1 299 29.8
Sed0014089 Sechium edule HOM05D002888 ORTHO05D003321 4.5e-16 89.7 300 29.3
DCAR_003463 Daucus carota HOM05D002888 ORTHO05D003321 7.6e-16 89.0 277 30.0
Ciclev10001701m.g Citrus clementina HOM05D002888 ORTHO05D003321 2.9e-15 87.0 315 27.0
VMungo0647G1937 Vigna mungo HOM05D002888 ORTHO05D003321 2.9e-15 87.0 320 27.5
Lj4C94T8 Lonicera japonica HOM05D002888 ORTHO05D003321 8.5e-15 85.5 297 27.3
Sopen00g013050 Solanum pennellii HOM05D002888 ORTHO05D003321 8.5e-15 85.5 299 29.4
Dinv44817 Davidia involucrata HOM05D002888 ORTHO05D003321 1.1e-14 85.1 305 29.8
Sc01g0000910 Simmondsia chinensis HOM05D002888 ORTHO05D003321 2.5e-14 84.0 281 30.6
Haze_18244 Corylus avellana HOM05D002888 ORTHO05D003321 3.2e-14 83.6 304 27.3
HanXRQChr05g0163241 Helianthus annuus HOM05D002888 ORTHO05D003321 3.2e-14 83.6 296 29.4
Migut.H02319 Erythranthe guttata HOM05D002888 ORTHO05D003321 5.5e-14 82.8 297 29.0
Medtr8g089850 Medicago truncatula HOM05D002888 ORTHO05D003321 5.5e-14 82.8 272 29.0
Phvul.008G178200 Phaseolus vulgaris HOM05D002888 ORTHO05D003321 7.2e-14 82.4 301 27.9
Solyc04g074830.1 Solanum lycopersicum HOM05D002888 ORTHO05D003321 7.2e-14 82.4 299 28.8
Ca_17774_v3 Cicer arietinum L. HOM05D002888 ORTHO05D003321 9.3e-14 82.0 310 30.6
Hma1.2p1_0045F.1_g026590 Hydrangea macrophylla HOM05D002888 ORTHO05D003321 9.3e-14 82.0 300 27.7
MD15G1378100 Malus domestica HOM05D002888 ORTHO05D003321 1.6e-13 81.3 327 25.1
vmacro04702 Vaccinium macrocarpon HOM05D002888 ORTHO05D003321 1.6e-13 81.3 335 26.3
MSTRG.23365 Avicennia marina HOM05D002888 ORTHO05D003321 2.7e-13 80.5 301 26.9
CsaV3_2G029960 Cucumis sativus L. HOM05D002888 ORTHO05D003321 2.7e-13 80.5 305 28.5
Nitab4.5_0004715g0010 Nicotiana tabacum HOM05D002888 ORTHO05D003321 2.7e-13 80.5 222 28.4
vmacro22669 Vaccinium macrocarpon HOM05D002888 ORTHO05D003321 4.6e-13 79.7 240 28.3
ClCG00G002660 Citrullus lanatus HOM05D002888 ORTHO05D003321 6.1e-13 79.3 304 29.9
ClCG08G011370 Citrullus lanatus HOM05D002888 ORTHO05D003321 6.1e-13 79.3 304 29.9
Gorai.007G059500 Gossypium raimondii HOM05D002888 ORTHO05D003321 7.9e-13 79.0 283 27.2
PGR042G3189 Punica granatum HOM05D002888 ORTHO05D003321 1.0e-12 78.6 294 26.2
Cc10_g06560 Coffea canephora HOM05D002888 ORTHO05D003321 1.3e-12 78.2 305 26.9
Peaxi162Scf00139g00057 Petunia axillaris HOM05D002888 ORTHO05D003321 1.3e-12 78.2 304 29.6
DCAR_019303 Daucus carota HOM05D002888 ORTHO05D003321 1.8e-12 77.8 301 25.9
PSO541G2212 Papaver somniferum HOM05D002888 ORTHO05D003321 1.8e-12 77.8 287 26.1
Lalb_Chr07g0185361 Lupinus albus HOM05D002888 ORTHO05D003321 2.3e-12 77.4 304 28.0
Gorai.009G232900 Gossypium raimondii HOM05D002888 ORTHO05D003321 6.7e-12 75.9 305 27.5
MELO3C011054.2 Cucumis melo HOM05D002888 ORTHO05D003321 1.1e-11 75.1 307 28.0
Gohir.D05G225400 Gossypium hirsutum HOM05D002888 ORTHO05D003321 1.5e-11 74.7 305 27.5
Lj4g0004924 Lotus japonicus HOM05D002888 ORTHO05D003321 1.5e-11 74.7 279 27.6
Gohir.A05G222700 Gossypium hirsutum HOM05D002888 ORTHO05D003321 1.9e-11 74.3 305 26.9
COL.COLO4_11980 Corchorus olitorius HOM05D002888 ORTHO05D003321 3.3e-11 73.6 277 29.6
Gohir.A06G032800 Gossypium hirsutum HOM05D002888 ORTHO05D003321 1.6e-10 71.2 295 24.7
Gorai.010G037200 Gossypium raimondii HOM05D002888 ORTHO05D003321 2.8e-10 70.5 295 25.4
Sabra05G0121900 Salix brachista HOM05D002888 ORTHO05D003321 6.3e-10 69.3 305 26.9
CAN.G905.1 Capsicum annuum HOM05D002888 ORTHO05D003321 6.9e-09 65.9 166 32.5
Potri.005G160800 Populus trichocarpa HOM05D002888 ORTHO05D003321 1.5e-08 64.7 304 27.3
Eucgr.B00050 Eucalyptus grandis HOM05D002888 ORTHO05D003321 2.0e-08 64.3 302 25.2
Ah.13g070700 Amaranthus hybridus HOM05D002888 ORTHO05D003321 3.4e-08 63.5 276 26.8
CARHR246530 Cardamine hirsuta HOM05D002888 ORTHO05D003321 4.5e-08 63.2 134 34.3
EL10Ac1g01114 Beta vulgaris HOM05D002888 ORTHO05D003321 3.8e-07 60.1 286 25.9
Actinidia01866 Actinidia chinensis HOM05D002888 ORTHO05D003321 5.0e-07 59.7 166 31.9
SalBow6G3166 Salvia bowleyana HOM05D000291 ORTHO05D001358 8.5e-07 58.9 283 23.7
Actinidia02765 Actinidia chinensis HOM05D002888 ORTHO05D003321 1.4e-06 58.2 225 27.1
CARHR246540 Cardamine hirsuta HOM05D002888 ORTHO05D003321 7.2e-06 55.8 158 27.8
Duzib116G0178 Durio zibethinus HOM05D002888 ORTHO05D003321 9.4e-06 55.5 228 24.1


User provided reference genes

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