Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G1620 Aethionema arabicum HOM05D001476 ORTHO05D006149 0.0e+00 1714.5 907 100.0
Thhalv10020022m.g Eutrema salsugineum HOM05D001476 ORTHO05D006149 0.0e+00 1506.1 907 85.7
Carub.0003s0826 Capsella rubella HOM05D001476 ORTHO05D006149 0.0e+00 1498.4 907 84.3
AT3G09090 Arabidopsis thaliana HOM05D001476 ORTHO05D006149 0.0e+00 1485.3 907 84.0
CARHR083470 Cardamine hirsuta HOM05D001476 ORTHO05D006149 0.0e+00 1483.8 905 84.3
BcaC09g48009 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1464.9 907 83.4
AL3G20170 Arabidopsis lyrata HOM05D001476 ORTHO05D006149 0.0e+00 1463.7 913 83.1
BcaC09g48054 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1461.8 907 83.4
Sp3g07550 Schrenkiella parvula HOM05D001476 ORTHO05D006149 0.0e+00 1456.4 907 83.4
A05p39780 Brassica napus HOM05D001476 ORTHO05D006149 0.0e+00 1453.7 914 82.9
BolC1t05473H Brassica oleracea HOM05D001476 ORTHO05D006149 0.0e+00 1451.8 925 81.7
BraA05t22762Z Brassica rapa HOM05D001476 ORTHO05D006149 0.0e+00 1441.4 930 81.2
BraA01t04314Z Brassica rapa HOM05D001476 ORTHO05D006149 0.0e+00 1430.6 910 82.2
THA.LOC104816221 Tarenaya hassleriana HOM05D001476 ORTHO05D006149 0.0e+00 1415.2 935 78.8
C05p58820 Brassica napus HOM05D001476 ORTHO05D006149 0.0e+00 1414.4 914 81.5
BcaC05g29640 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1382.9 953 77.6
Cpa.g.sc56.111 Carica papaya HOM05D001476 ORTHO05D006149 0.0e+00 1224.9 911 71.1
Duzib128G0639 Durio zibethinus HOM05D001476 ORTHO05D006149 0.0e+00 1222.6 899 70.7
Thecc.05G022500 Theobroma cacao HOM05D001476 ORTHO05D006149 0.0e+00 1219.1 910 70.3
GSVIVG01034014001 Vitis vinifera HOM05D001476 ORTHO05D006149 0.0e+00 1219.1 912 70.5
Gohir.A09G163100 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1216.8 899 71.6
Gohir.D09G158600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1208.4 899 70.7
Gorai.006G180300 Gossypium raimondii HOM05D001476 ORTHO05D006149 0.0e+00 1206.0 913 70.2
Ciclev10011050m.g Citrus clementina HOM05D001476 ORTHO05D006149 0.0e+00 1204.1 902 70.5
Dinv35515 Davidia involucrata HOM05D001476 ORTHO05D006149 0.0e+00 1200.7 882 71.2
PGR031G2805 Punica granatum HOM05D001476 ORTHO05D006149 0.0e+00 1199.9 912 69.6
Actinidia13780 Actinidia chinensis HOM05D001476 ORTHO05D006149 0.0e+00 1198.7 886 71.6
CSS0024803 Camellia sinensis var. sinensis HOM05D001476 ORTHO05D006149 0.0e+00 1196.0 882 71.0
Manes.09G101900 Manihot esculenta HOM05D001476 ORTHO05D006149 0.0e+00 1196.0 930 68.5
Potri.006G096100 Populus trichocarpa HOM05D001476 ORTHO05D006149 0.0e+00 1195.3 910 69.7
TAR402G0001 Trochodendron aralioides HOM05D001476 ORTHO05D006149 0.0e+00 1193.7 920 68.2
Potri.016G110800 Populus trichocarpa HOM05D001476 ORTHO05D006149 0.0e+00 1191.8 909 69.5
Haze_20947 Corylus avellana HOM05D001476 ORTHO05D006149 0.0e+00 1191.0 942 67.3
Nn2g13602 Nelumbo nucifera HOM05D001476 ORTHO05D006149 0.0e+00 1189.9 917 68.2
TWI77G0827 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 0.0e+00 1184.5 910 68.6
Hma1.2p1_0763F.1_g214610 Hydrangea macrophylla HOM05D001476 ORTHO05D006149 0.0e+00 1183.7 915 68.9
PSO210G1670 Papaver somniferum HOM05D001476 ORTHO05D006149 0.0e+00 1180.2 886 69.6
TWI74G1595 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 0.0e+00 1179.5 910 68.9
Gorai.012G111700 Gossypium raimondii HOM05D001476 ORTHO05D006149 0.0e+00 1179.1 889 68.8
ClCG04G007260 Citrullus lanatus HOM05D001476 ORTHO05D006149 0.0e+00 1178.3 911 68.3
Eucgr.B02781 Eucalyptus grandis HOM05D001476 ORTHO05D006149 0.0e+00 1178.3 912 69.3
SGA_v2.0_scaffold22G09908 Striga asiatica HOM05D001476 ORTHO05D006149 0.0e+00 1178.3 903 69.0
PSO832G0213 Papaver somniferum HOM05D001476 ORTHO05D006149 0.0e+00 1175.6 883 70.3
CsaV3_4G025980 Cucumis sativus L. HOM05D001476 ORTHO05D006149 0.0e+00 1175.2 911 67.8
Gohir.D04G128600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1174.1 889 68.7
CiPaw.09G205700 Carya illinoinensis HOM05D001476 ORTHO05D006149 0.0e+00 1173.7 913 67.8
Nitab4.5_0000008g0700 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1173.7 913 68.2
ECA236G3430 Erigeron canadensis HOM05D001476 ORTHO05D006149 0.0e+00 1173.3 881 69.9
FvH4_6g12060 Fragaria vesca HOM05D001476 ORTHO05D006149 0.0e+00 1172.9 910 68.7
Prupe.6G270500 Prunus persica HOM05D001476 ORTHO05D006149 0.0e+00 1170.6 908 68.3
Atru.chr8.2151 Acer truncatum HOM05D001476 ORTHO05D006149 0.0e+00 1169.8 908 68.1
MELO3C003223.2 Cucumis melo HOM05D001476 ORTHO05D006149 0.0e+00 1169.8 917 67.6
Sed0007041 Sechium edule HOM05D001476 ORTHO05D006149 0.0e+00 1166.8 925 67.2
Migut.J00228 Erythranthe guttata HOM05D001476 ORTHO05D006149 0.0e+00 1166.4 910 67.9
Nitab4.5_0011723g0020 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1166.0 913 68.1
Nitab4.5_0004912g0100 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1164.8 911 67.7
SGA_v2.0_scaffold85G26765 Striga asiatica HOM05D001476 ORTHO05D006149 0.0e+00 1162.9 888 69.7
Sed0003764 Sechium edule HOM05D001476 ORTHO05D006149 0.0e+00 1158.7 902 67.7
Aqoxy1G00720 Aquilegia oxysepala HOM05D001476 ORTHO05D006149 0.0e+00 1157.9 914 66.8
Sopen10g034520 Solanum pennellii HOM05D001476 ORTHO05D006149 0.0e+00 1156.7 910 67.0
Sc24g0002110 Simmondsia chinensis HOM05D001476 ORTHO05D006149 0.0e+00 1151.7 932 65.8
CANSAT35G0098 Cannabis sativa HOM05D001476 ORTHO05D006149 0.0e+00 1151.0 912 66.4
HanXRQChr16g0507821 Helianthus annuus HOM05D001476 ORTHO05D006149 0.0e+00 1150.6 911 66.8
Lj3g0014893 Lotus japonicus HOM05D001476 ORTHO05D006149 0.0e+00 1147.1 904 66.8
CAN.G355.19 Capsicum annuum HOM05D001476 ORTHO05D006149 0.0e+00 1139.4 917 66.2
Cc06_g01690 Coffea canephora HOM05D001476 ORTHO05D006149 0.0e+00 1138.6 910 64.2
SalBow5G4659 Salvia bowleyana HOM05D001476 ORTHO05D006149 0.0e+00 1137.1 924 65.5
FAN05G2912 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1134.8 910 67.5
PGSC0003DMG400011017 Solanum tuberosum HOM05D001476 ORTHO05D006149 0.0e+00 1133.6 912 66.4
Ca_23816_v3 Cicer arietinum L. HOM05D001476 ORTHO05D006149 0.0e+00 1132.9 899 65.7
DCAR_024038 Daucus carota HOM05D001476 ORTHO05D006149 0.0e+00 1131.7 918 66.0
Medtr4g014960 Medicago truncatula HOM05D001476 ORTHO05D006149 0.0e+00 1130.2 902 66.0
Peaxi162Scf00141g00813 Petunia axillaris HOM05D001476 ORTHO05D006149 0.0e+00 1130.2 865 68.4
Peaxi162Scf00009g02022 Petunia axillaris HOM05D001476 ORTHO05D006149 0.0e+00 1128.2 918 66.2
Solyc09g013130.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 0.0e+00 1126.7 921 65.6
Psat0s2261g0240 Pisum sativum HOM05D001476 ORTHO05D006149 0.0e+00 1126.3 906 66.0
Oeu004614.2 Olea europaea HOM05D001476 ORTHO05D006149 0.0e+00 1125.5 899 66.3
FAN02G1993 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1125.2 910 67.1
FAN09G2729 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1125.2 925 66.4
FAN14G1008 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1124.8 925 66.4
FAN14G2619 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1123.6 925 66.3
Sopen09g006990 Solanum pennellii HOM05D001476 ORTHO05D006149 0.0e+00 1119.8 921 65.5
EL10Ac5g11563 Beta vulgaris HOM05D001476 ORTHO05D006149 0.0e+00 1119.4 947 63.9
Cfa017258 Carpinus fangiana HOM05D001476 ORTHO05D002681 0.0e+00 1115.1 864 70.4
Nitab4.5_0000652g0160 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1113.6 867 68.1
HPP92_018041 Vanilla planifolia HOM05D001476 ORTHO05D006149 0.0e+00 1113.6 880 64.7
Glyma.03G076900 Glycine max HOM05D001476 ORTHO05D006149 0.0e+00 1110.1 904 65.0
Rhsim05G0205700 Rhododendron simsii HOM05D001476 ORTHO05D006149 0.0e+00 1109.0 882 66.6
Glyma.01G111300 Glycine max HOM05D001476 ORTHO05D006149 0.0e+00 1107.4 890 65.5
VMungo0331G0441 Vigna mungo HOM05D001476 ORTHO05D006149 0.0e+00 1100.9 890 65.2
TPR.G5272 Trifolium pratense HOM05D001476 ORTHO05D006149 0.0e+00 1094.7 909 64.8
MD04G1146700 Malus domestica HOM05D001476 ORTHO05D006149 0.0e+00 1094.0 916 65.3
MD12G1159900 Malus domestica HOM05D001476 ORTHO05D006149 0.0e+00 1090.5 937 64.1
Phvul.010G008300 Phaseolus vulgaris HOM05D001476 ORTHO05D006149 0.0e+00 1088.2 931 62.5
ATR0618G171 Amborella trichopoda HOM05D001476 ORTHO05D006149 0.0e+00 1085.9 864 65.6
PGSC0003DMG400020350 Solanum tuberosum HOM05D001476 ORTHO05D006149 0.0e+00 1078.2 1021 59.0
CDE04G3748 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 0.0e+00 1075.8 881 63.7
Lsat_1_v5_gn_8_99901 Lactuca sativa HOM05D001476 ORTHO05D006149 0.0e+00 1075.5 863 66.6
Lalb_Chr07g0193321 Lupinus albus HOM05D001476 ORTHO05D006149 2.3e-309 1065.4 951 61.5
Lj3A957T35 Lonicera japonica HOM05D001476 ORTHO05D006149 9.8e-308 1060.1 978 60.6
Zm00001eb063130 Zea mays HOM05D001476 ORTHO05D006149 1.8e-306 1055.8 902 61.5
unitig_699.g19385 Utricularia gibba HOM05D001476 ORTHO05D006149 2.4e-306 1055.4 906 62.7
arahy.Tifrunner.gnm1.ann1.VBIR99 Arachis hypogaea HOM05D001476 ORTHO05D006149 2.5e-303 1045.4 906 63.1
arahy.Tifrunner.gnm1.ann1.5UT5JQ Arachis hypogaea HOM05D001476 ORTHO05D006149 4.3e-303 1044.6 906 63.0
Duzib106G0695 Durio zibethinus HOM05D001476 ORTHO05D006149 1.2e-302 1043.1 899 61.3
Rhsim05G0205800 Rhododendron simsii HOM05D001476 ORTHO05D006149 2.6e-300 1035.4 956 58.6
Gohir.A04G088225 Gossypium hirsutum HOM05D001476 ORTHO05D006149 1.1e-298 1030.0 801 66.5
Os03g0825700 Oryza sativa ssp. japonica HOM05D001476 ORTHO05D006149 3.9e-296 1021.5 880 61.8
vmacro20235 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 1.3e-291 1006.5 832 64.3
CDE03G0023 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 2.4e-290 1002.3 879 58.8
Oeu044363.1 Olea europaea HOM05D001476 ORTHO05D006149 3.5e-281 971.8 888 58.9
Solyc10g085060.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 1.6e-273 946.4 761 65.0
Ah.11g045320 Amaranthus hybridus HOM05D001476 ORTHO05D006149 5.1e-272 941.4 916 58.5
Lsat_1_v5_gn_0_44361 Lactuca sativa HOM05D001476 ORTHO05D006149 1.4e-261 906.7 754 63.4
Pp3c20_710 Physcomitrium patens HOM05D001476 ORTHO05D006149 1.4e-258 896.7 887 53.6
Sabra16G0107400 Salix brachista HOM05D001476 ORTHO05D006149 1.4e-258 896.7 967 54.6
CAN.G1297.2 Capsicum annuum HOM05D001476 ORTHO05D006149 2.1e-257 892.9 542 80.1
MSTRG.5600 Avicennia marina HOM05D001476 ORTHO05D006149 4.6e-257 891.7 735 65.7
RcHm_v2.0_Chr3g0463911 Rosa chinensis HOM05D001476 ORTHO05D006149 1.1e-255 887.1 746 65.3
Sabra06G0073800 Salix brachista HOM05D001476 ORTHO05D002681 4.8e-254 881.7 915 56.5
TAR636G2437 Trochodendron aralioides HOM05D001476 ORTHO05D006149 1.3e-248 863.6 505 81.0
Mapoly0103s0063 Marchantia polymorpha HOM05D001476 ORTHO05D006149 3.7e-246 855.5 904 51.2
SMO145G0033 Selaginella moellendorffii HOM05D001476 ORTHO05D006149 1.3e-243 847.0 891 52.7
SEGI_02222 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 1.5e-228 797.0 716 60.1
AagrBONN_evm.TU.Sc2ySwM_369.563 Anthoceros agrestis HOM05D001476 ORTHO05D006149 1.3e-174 617.8 680 51.9
AUR62043525 Chenopodium quinoa HOM05D001476 ORTHO05D006149 3.0e-171 606.7 465 66.2
TPR.G6686 Trifolium pratense HOM05D001476 ORTHO05D006149 6.6e-171 605.5 371 77.6
COL.COLO4_14599 Corchorus olitorius HOM05D001476 ORTHO05D006149 1.6e-169 600.9 352 82.4
AUR62044509 Chenopodium quinoa HOM05D001476 ORTHO05D006149 9.2e-165 585.1 341 81.2
AUR62043103 Chenopodium quinoa HOM05D001476 ORTHO05D006149 2.4e-160 570.5 360 76.4
SHI12782 Sapria himalayana HOM05D001476 ORTHO05D006149 2.2e-158 563.9 580 55.9
AUR62043102 Chenopodium quinoa HOM05D001476 ORTHO05D006149 8.1e-145 518.8 556 56.8
vmacro17486 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 2.3e-139 500.7 415 63.4
CBR_g8542 Chara braunii HOM05D001476 ORTHO05D006149 3.8e-134 483.4 713 41.9
MCO10G178 Micromonas commoda HOM05D001476 ORTHO05D006149 4.2e-133 479.9 896 37.5
Cre04.g214097 Chlamydomonas reinhardtii HOM05D001476 ORTHO05D006149 2.8e-129 467.2 988 34.5
SHI12784 Sapria himalayana HOM05D001476 ORTHO05D006149 7.4e-122 442.6 300 71.0
BcaC09g47968 Brassica carinata HOM05D001476 ORTHO05D006149 6.3e-121 439.5 292 77.1
AUR62043524 Chenopodium quinoa HOM05D001476 ORTHO05D006149 5.0e-102 376.7 468 53.8
PRCOL_00002974 Prasinoderma coloniale HOM05D001476 ORTHO05D006149 9.4e-101 372.5 1037 31.2
COL.COLO4_14600 Corchorus olitorius HOM05D001476 ORTHO05D006149 1.6e-100 371.7 549 46.3
Actinidia29132 Actinidia chinensis HOM05D001476 ORTHO05D006149 3.1e-80 304.3 611 36.5
RcHm_v2.0_Chr3g0463901 Rosa chinensis HOM05D001476 ORTHO05D006149 3.2e-72 277.7 165 80.0
TAR636G0462 Trochodendron aralioides HOM05D001476 ORTHO05D006149 5.0e-70 270.4 365 50.4
BolC5t34534H Brassica oleracea HOM05D001476 ORTHO05D002681 7.5e-58 229.9 148 87.8
Dinv37085 Davidia involucrata HOM05D001476 ORTHO05D002681 1.7e-46 192.2 327 39.1
Hund31411 Selenicereus undatus HOM05D001476 ORTHO05D006149 8.1e-44 183.3 104 83.7
vmacro17485 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 7.3e-37 160.2 107 72.9
SEGI_09667 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 5.8e-34 150.6 107 64.5
MSTRG.19033 Avicennia marina HOM05D001476 ORTHO05D031643 1.0e-30 139.8 83 75.9
FAN23G1187 Fragaria x ananassa HOM05D001476 ORTHO05D031643 4.3e-21 107.8 86 65.1
TAR629G0215 Trochodendron aralioides HOM05D000393 ORTHO05D000275 3.2e-16 91.7 54 72.2
Rhsim09G0090000 Rhododendron simsii HOM05D001476 ORTHO05D034934 1.6e-15 89.4 77 58.4
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 5.1e-14 84.3 82 53.7
FAN19G0609 Fragaria x ananassa HOM05D014108 ORTHO05D015280 2.5e-13 82.0 94 52.1
GSVIVG01021923001 Vitis vinifera HOM05D001476 ORTHO05D006149 6.9e-11 73.9 66 53.0
TAR626G1231 Trochodendron aralioides HOM05D000393 ORTHO05D000275 1.2e-10 73.2 68 48.5
TAR369G0367 Trochodendron aralioides HOM05D001309 ORTHO05D000385 4.5e-10 71.2 41 70.7
TAR636G0366 Trochodendron aralioides HOM05D001476 ORTHO05D006149 5.9e-10 70.9 53 73.6
TWI53G1805 Tripterygium wilfordii HOM05D001476 ORTHO05D031643 1.6e-07 62.8 52 59.6
Rhsim05G0112000 Rhododendron simsii HOM05D047264 ORTHO05D021376 2.7e-07 62.0 56 57.1
MELO3C011527.2 Cucumis melo HOM05D001476 ORTHO05D034934 4.6e-07 61.2 40 67.5


User provided reference genes

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