Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G1610 Aethionema arabicum HOM05D007125 ORTHO05D008766 0.0e+00 1959.1 1014 100.0
AL3G20150 Arabidopsis lyrata HOM05D007125 ORTHO05D008766 0.0e+00 1343.6 1112 66.5
Thhalv10022253m.g Eutrema salsugineum HOM05D007125 ORTHO05D008766 0.0e+00 1329.3 1015 71.2
AT3G09080 Arabidopsis thaliana HOM05D007125 ORTHO05D008766 0.0e+00 1321.2 1110 66.4
BcaC09g48007 Brassica carinata HOM05D007125 ORTHO05D008766 0.0e+00 1299.6 1115 63.9
BraA01t04316Z Brassica rapa HOM05D007125 ORTHO05D008766 0.0e+00 1291.9 1112 63.8
BolC1t05475H Brassica oleracea HOM05D007125 ORTHO05D008766 0.0e+00 1288.1 1123 63.3
Carub.0003s0824 Capsella rubella HOM05D007125 ORTHO05D008766 0.0e+00 1279.2 1113 63.1
Sp3g07530 Schrenkiella parvula HOM05D007125 ORTHO05D008766 0.0e+00 1206.8 984 66.9
CARHR083450 Cardamine hirsuta HOM05D007125 ORTHO05D008766 0.0e+00 1117.4 953 63.8
THA.LOC104823281 Tarenaya hassleriana HOM05D007125 ORTHO05D008766 1.6e-298 1029.6 1142 53.7
Haze_20950 Corylus avellana HOM05D007125 ORTHO05D008766 7.3e-203 711.8 1212 40.1
Cpa.g.sc56.115 Carica papaya HOM05D007125 ORTHO05D008766 1.0e-196 691.4 821 48.1
Duzib093G0828 Durio zibethinus HOM05D007125 ORTHO05D008766 1.7e-196 690.6 1224 38.5
Thecc.05G022200 Theobroma cacao HOM05D007125 ORTHO05D008766 1.1e-195 688.0 1186 39.5
Potri.006G096400 Populus trichocarpa HOM05D007125 ORTHO05D008766 4.3e-195 686.0 1235 38.1
CiPaw.09G206100 Carya illinoinensis HOM05D007125 ORTHO05D008766 6.2e-194 682.2 1214 40.6
Ciclev10013588m.g Citrus clementina HOM05D007125 ORTHO05D008766 1.7e-191 674.1 937 43.5
TWI77G0961 Tripterygium wilfordii HOM05D007125 ORTHO05D008766 2.9e-191 673.3 1190 39.2
Dinv35513 Davidia involucrata HOM05D007125 ORTHO05D008766 1.3e-188 664.5 1240 37.7
Sabra06G0074100 Salix brachista HOM05D007125 ORTHO05D008766 2.5e-187 660.2 1228 37.1
TAR623G0133 Trochodendron aralioides HOM05D007125 ORTHO05D008766 4.8e-186 656.0 1274 36.7
COL.COLO4_14596 Corchorus olitorius HOM05D007125 ORTHO05D008766 6.9e-185 652.1 1186 38.5
GSVIVG01034011001 Vitis vinifera HOM05D007125 ORTHO05D008766 7.6e-184 648.7 932 43.8
Gohir.D09G158900 Gossypium hirsutum HOM05D007125 ORTHO05D008766 1.9e-179 634.0 965 40.9
Gorai.006G180600 Gossypium raimondii HOM05D007125 ORTHO05D008766 1.3e-178 631.3 965 40.8
CANSAT35G1716 Cannabis sativa HOM05D007125 ORTHO05D008766 3.7e-178 629.8 931 42.5
Aqoxy1G00714 Aquilegia oxysepala HOM05D007125 ORTHO05D008766 2.5e-171 607.1 853 43.0
Sed0001650 Sechium edule HOM05D007125 ORTHO05D008766 1.4e-169 601.3 934 41.0
vmacro20236 Vaccinium macrocarpon HOM05D007125 ORTHO05D008766 2.0e-168 597.4 870 42.4
PGR031G2086 Punica granatum HOM05D007125 ORTHO05D008766 1.7e-167 594.3 1177 36.5
CsaV3_4G025990 Cucumis sativus L. HOM05D007125 ORTHO05D008766 1.3e-164 584.7 1229 36.0
Actinidia29131 Actinidia chinensis HOM05D007125 ORTHO05D008766 3.9e-164 583.2 1212 35.9
Phvul.008G107900 Phaseolus vulgaris HOM05D007125 ORTHO05D008766 1.3e-162 578.2 1201 34.6
Lj2A79T37 Lonicera japonica HOM05D007125 ORTHO05D008766 2.8e-162 577.0 970 40.3
Hma1.2p1_0763F.1_g214640 Hydrangea macrophylla HOM05D007125 ORTHO05D008766 3.7e-162 576.6 943 40.5
Manes.08G087700 Manihot esculenta HOM05D007125 ORTHO05D008766 1.9e-158 564.3 977 38.5
PSO384G0252 Papaver somniferum HOM05D007125 ORTHO05D008766 3.2e-158 563.5 960 38.2
ClCG04G007250 Citrullus lanatus HOM05D007125 ORTHO05D008766 1.1e-155 555.1 1234 34.1
MBI05_g03452_MAGBIO Magnolia biondii HOM05D007125 ORTHO05D008766 5.7e-155 552.7 828 40.3
Nn2g11366 Nelumbo nucifera HOM05D007125 ORTHO05D008766 1.3e-154 551.6 1203 34.3
arahy.Tifrunner.gnm1.ann1.A1GI61 Arachis hypogaea HOM05D007125 ORTHO05D008766 1.4e-153 548.1 980 38.0
DCAR_024035 Daucus carota HOM05D007125 ORTHO05D008766 3.4e-152 543.5 1264 33.2
Sopen09g007020 Solanum pennellii HOM05D007125 ORTHO05D008766 1.0e-151 542.0 843 41.2
arahy.Tifrunner.gnm1.ann1.8EY2MC Arachis hypogaea HOM05D007125 ORTHO05D008766 8.5e-151 538.9 1228 33.2
Lalb_Chr03g0042991 Lupinus albus HOM05D007125 ORTHO05D008766 1.4e-150 538.1 1075 36.5
Nitab4.5_0009193g0010 Nicotiana tabacum HOM05D007125 ORTHO05D008766 3.2e-150 537.0 829 41.1
Nitab4.5_0000008g0740 Nicotiana tabacum HOM05D007125 ORTHO05D008766 2.1e-149 534.3 826 40.9
Lj1g0008640 Lotus japonicus HOM05D007125 ORTHO05D008766 6.1e-149 532.7 930 38.5
Glyma.07G144800 Glycine max HOM05D007125 ORTHO05D008766 3.0e-148 530.4 873 39.1
Solyc09g013160.3 Solanum lycopersicum HOM05D007125 ORTHO05D008766 3.9e-148 530.0 842 40.5
ATR0618G048 Amborella trichopoda HOM05D007125 ORTHO05D008766 1.0e-143 515.4 944 36.9
Ca_09172_v3 Cicer arietinum L. HOM05D007125 ORTHO05D008766 3.9e-140 503.4 872 40.1
TPR.G1550 Trifolium pratense HOM05D007125 ORTHO05D008766 1.5e-139 501.5 722 43.2
Lsat_1_v5_gn_8_99881 Lactuca sativa HOM05D007125 ORTHO05D008766 4.8e-138 496.5 1113 34.1
Gohir.A09G163400 Gossypium hirsutum HOM05D007125 ORTHO05D008766 7.0e-137 492.7 763 40.0
VMungo1383G2599 Vigna mungo HOM05D007125 ORTHO05D008766 1.2e-136 491.9 982 36.4
Migut.J00225 Erythranthe guttata HOM05D007125 ORTHO05D008766 2.0e-136 491.1 975 35.8
Psat3g131480 Pisum sativum HOM05D007125 ORTHO05D008766 4.2e-134 483.4 1229 31.8
SalBow5G1282 Salvia bowleyana HOM05D007125 ORTHO05D008766 9.4e-134 482.3 1146 33.1
Atru.chr8.2198 Acer truncatum HOM05D007125 ORTHO05D008766 5.3e-129 466.5 822 39.2
Oeu044362.1 Olea europaea HOM05D007125 ORTHO05D008766 4.7e-125 453.4 771 38.4
MSTRG.19028 Avicennia marina HOM05D007125 ORTHO05D008766 2.8e-122 444.1 746 37.7
MELO3C003224.2 Cucumis melo HOM05D007125 ORTHO05D008766 1.8e-121 441.4 1229 31.7
ECA236G2625 Erigeron canadensis HOM05D007125 ORTHO05D008766 8.0e-117 426.0 974 33.1
PGSC0003DMG400020348 Solanum tuberosum HOM05D007125 ORTHO05D008766 4.4e-115 420.2 500 46.2
HanXRQChr04g0102021 Helianthus annuus HOM05D007125 ORTHO05D008766 1.1e-110 405.6 645 38.9
CDE04G1007 Ceratophyllum demersum HOM05D007125 ORTHO05D008766 5.2e-108 396.7 898 33.2
Pp3c9_8840 Physcomitrium patens HOM05D007125 ORTHO05D008766 3.7e-98 364.0 1000 29.9
Mapoly0113s0048 Marchantia polymorpha HOM05D007125 ORTHO05D008766 5.1e-95 353.6 1059 29.2
SMO358G0023 Selaginella moellendorffii HOM05D007125 ORTHO05D008766 2.2e-90 338.2 953 29.9
CSS0003995 Camellia sinensis var. sinensis HOM05D007125 ORTHO05D008766 8.3e-90 336.3 487 42.9
AagrBONN_evm.TU.Sc2ySwM_228.1352 Anthoceros agrestis HOM05D007125 ORTHO05D008766 6.2e-85 320.1 1000 29.2
Pp3c3_16960 Physcomitrium patens HOM05D007125 ORTHO05D008766 1.5e-78 298.9 762 29.5
Sc01g0006770 Simmondsia chinensis HOM05D007125 ORTHO05D008766 1.5e-75 288.9 518 38.6
Medtr7g066770 Medicago truncatula HOM05D007125 ORTHO05D008766 2.8e-69 268.1 475 37.7
BolC1t05511H Brassica oleracea HOM05D007125 ORTHO05D008766 3.3e-54 218.0 184 64.1
Medtr7g066750 Medicago truncatula HOM05D007125 ORTHO05D008766 6.7e-47 193.7 320 38.1
CARHR083440 Cardamine hirsuta HOM05D007125 ORTHO05D008766 1.9e-46 192.2 156 66.7
Cre01.g034600 Chlamydomonas reinhardtii HOM05D007125 ORTHO05D008766 2.7e-40 171.8 545 28.6
arahy.Tifrunner.gnm1.ann1.IUS8SN Arachis hypogaea HOM05D007125 ORTHO05D008766 3.9e-39 167.9 240 42.5
HanXRQChr04g0102011 Helianthus annuus HOM05D007125 ORTHO05D008766 3.9e-39 167.9 294 37.4
arahy.Tifrunner.gnm1.ann1.KE62B1 Arachis hypogaea HOM05D007125 ORTHO05D008766 6.7e-39 167.2 256 39.5
arahy.Tifrunner.gnm1.ann1.KIE2XR Arachis hypogaea HOM05D007125 ORTHO05D008766 7.4e-38 163.7 256 39.1
Sc01g0006790 Simmondsia chinensis HOM05D007125 ORTHO05D008766 8.2e-29 133.7 234 37.6
SEGI_28201 Sequoiadendron giganteum HOM05D007125 ORTHO05D008766 4.1e-28 131.3 324 33.3
unitig_27.g24821 Utricularia gibba HOM05D007125 ORTHO05D008766 8.5e-26 123.6 193 38.3
BcaC09g47967 Brassica carinata HOM05D007125 ORTHO05D008766 8.0e-24 117.1 76 77.6
Lalb_Chr03g0042981 Lupinus albus HOM05D007125 ORTHO05D008766 6.7e-23 114.0 89 64.0
VMungo1383G1324 Vigna mungo HOM05D007125 ORTHO05D008766 2.0e-22 112.5 88 62.5
Actinidia13779 Actinidia chinensis HOM05D007125 ORTHO05D008766 4.4e-22 111.3 99 59.6
CSS0006466 Camellia sinensis var. sinensis HOM05D007125 ORTHO05D008766 3.7e-21 108.2 89 66.3
MCO08G172 Micromonas commoda HOM05D007125 ORTHO05D008766 1.7e-18 99.4 570 23.2
Sc01g0006780 Simmondsia chinensis HOM05D007125 ORTHO05D008766 1.1e-17 96.7 114 50.0
MBI11_g31733_MAGBIO Magnolia biondii HOM05D007125 ORTHO05D008766 4.8e-13 81.3 84 46.4
unitig_27.g24820 Utricularia gibba HOM05D007125 ORTHO05D008766 1.1e-09 70.1 79 51.9
TPR.G1592 Trifolium pratense HOM05D007125 ORTHO05D008766 3.6e-08 65.1 110 35.5
MSTRG.19029 Avicennia marina HOM05D007125 ORTHO05D008766 4.7e-08 64.7 57 59.6
MBI05_g03454_MAGBIO Magnolia biondii HOM05D007125 ORTHO05D008766 6.8e-07 60.8 186 26.3
DCAR_012445 Daucus carota HOM05D002999 ORTHO05D003137 8.8e-07 60.5 154 28.6
SalBow2G1504 Salvia bowleyana HOM05D005544 ORTHO05D007303 9.8e-06 57.0 218 25.2


User provided reference genes

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