Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G1470 Aethionema arabicum HOM05D005421 ORTHO05D007601 5.0e-141 505.0 370 100.0
BcaB01g03524 Brassica carinata HOM05D005421 ORTHO05D007601 3.5e-110 402.5 368 83.4
C03p27110 Brassica napus HOM05D005421 ORTHO05D007601 1.1e-108 397.5 368 82.6
BolC3t15092H Brassica oleracea HOM05D005421 ORTHO05D007601 1.1e-108 397.5 368 82.6
BcaC01g05387 Brassica carinata HOM05D005421 ORTHO05D007601 1.9e-108 396.7 368 82.3
THA.LOC104805907 Tarenaya hassleriana HOM05D005421 ORTHO05D007601 2.7e-107 392.9 370 81.4
THA.LOC104820733 Tarenaya hassleriana HOM05D005421 ORTHO05D007601 7.5e-105 384.8 218 88.5
Sp4g22980 Schrenkiella parvula HOM05D005421 ORTHO05D007601 1.2e-102 377.5 190 95.8
CARHR135760 Cardamine hirsuta HOM05D005421 ORTHO05D007601 2.0e-102 376.7 190 95.8
AL4G38520 Arabidopsis lyrata HOM05D005421 ORTHO05D007601 1.7e-101 373.6 190 94.7
AT2G40650 Arabidopsis thaliana HOM05D005421 ORTHO05D007601 1.7e-101 373.6 190 94.7
BraA03t11510Z Brassica rapa HOM05D005421 ORTHO05D007601 1.7e-101 373.6 190 94.7
Carub.0004s2294 Capsella rubella HOM05D005421 ORTHO05D007601 2.9e-101 372.9 190 94.7
Haze_04100 Corylus avellana HOM05D005421 ORTHO05D007601 5.0e-101 372.1 222 82.4
BcaC02g07328 Brassica carinata HOM05D005421 ORTHO05D007601 8.5e-101 371.3 368 73.4
Sabra13G0010600 Salix brachista HOM05D005421 ORTHO05D007601 3.2e-100 369.4 377 78.8
Manes.13G000084 Manihot esculenta HOM05D005421 ORTHO05D007601 5.5e-100 368.6 222 82.9
TWI12G1149 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 9.4e-100 367.9 372 78.2
Cfa006671 Carpinus fangiana HOM05D005421 ORTHO05D007601 1.2e-99 367.5 223 83.4
Cpa.g.sc48.125 Carica papaya HOM05D005421 ORTHO05D007601 2.1e-99 366.7 219 84.0
Potri.013G012000 Populus trichocarpa HOM05D005421 ORTHO05D007601 2.1e-99 366.7 221 81.9
CiPaw.07G025400 Carya illinoinensis HOM05D005421 ORTHO05D007601 6.1e-99 365.2 222 81.5
A04p31080 Brassica napus HOM05D005421 ORTHO05D007601 8.0e-99 364.8 217 85.3
QL03p018920 Quercus lobata HOM05D005421 ORTHO05D007601 8.0e-99 364.8 222 83.3
C04p68470 Brassica napus HOM05D005421 ORTHO05D007601 1.0e-98 364.4 375 73.1
A03p22860 Brassica napus HOM05D005421 ORTHO05D007601 8.8e-98 361.3 213 84.5
Glyma.20G238500 Glycine max HOM05D005421 ORTHO05D007601 1.2e-97 360.9 222 81.5
RcHm_v2.0_Chr3g0456541 Rosa chinensis HOM05D005421 ORTHO05D007601 1.2e-97 360.9 220 81.4
FAN05G0688 Fragaria x ananassa HOM05D005421 ORTHO05D007601 1.5e-97 360.5 220 80.9
Lalb_Chr02g0148011 Lupinus albus HOM05D005421 ORTHO05D007601 1.5e-97 360.5 221 82.4
Prupe.1G236900 Prunus persica HOM05D005421 ORTHO05D007601 1.5e-97 360.5 223 82.5
SGA_v2.0_scaffold4G01947 Striga asiatica HOM05D005421 ORTHO05D007601 1.5e-97 360.5 372 68.5
Thecc.06G040900 Theobroma cacao HOM05D005421 ORTHO05D007601 2.6e-97 359.8 223 83.0
FAN14G1909 Fragaria x ananassa HOM05D005421 ORTHO05D007601 3.4e-97 359.4 220 80.5
MD12G1209800 Malus domestica HOM05D005421 ORTHO05D007601 3.4e-97 359.4 374 77.5
MELO3C004206.2 Cucumis melo HOM05D005421 ORTHO05D007601 4.4e-97 359.0 223 78.9
Nitab4.5_0001971g0070 Nicotiana tabacum HOM05D005421 ORTHO05D007601 4.4e-97 359.0 381 74.3
Sed0018701 Sechium edule HOM05D005421 ORTHO05D007601 4.4e-97 359.0 223 78.9
PGSC0003DMG400024728 Solanum tuberosum HOM05D005421 ORTHO05D007601 5.7e-97 358.6 378 77.5
CAN.G1273.26 Capsicum annuum HOM05D005421 ORTHO05D007601 7.5e-97 358.2 221 77.8
MD04G1196900 Malus domestica HOM05D005421 ORTHO05D007601 7.5e-97 358.2 376 75.5
ClCG02G015170 Citrullus lanatus HOM05D005421 ORTHO05D007601 9.8e-97 357.8 223 78.5
FvH4_6g07010 Fragaria vesca HOM05D005421 ORTHO05D007601 9.8e-97 357.8 221 81.0
Nitab4.5_0002612g0040 Nicotiana tabacum HOM05D005421 ORTHO05D007601 9.8e-97 357.8 222 78.4
BolC4t28347H Brassica oleracea HOM05D005421 ORTHO05D007601 1.3e-96 357.5 424 69.1
CSS0007056 Camellia sinensis var. sinensis HOM05D005421 ORTHO05D007601 1.3e-96 357.5 222 79.7
CSS0046729 Camellia sinensis var. sinensis HOM05D005421 ORTHO05D007601 1.3e-96 357.5 222 79.7
PSO170G1114 Papaver somniferum HOM05D005421 ORTHO05D007601 1.3e-96 357.5 222 80.6
PSO407G0035 Papaver somniferum HOM05D005421 ORTHO05D007601 1.3e-96 357.5 222 80.6
Phvul.007G199400 Phaseolus vulgaris HOM05D005421 ORTHO05D007601 1.3e-96 357.5 222 80.6
ECA236G4663 Erigeron canadensis HOM05D005421 ORTHO05D007601 1.7e-96 357.1 221 80.1
CsaV3_2G006840 Cucumis sativus L. HOM05D005421 ORTHO05D007601 2.8e-96 356.3 223 78.0
Solyc01g100060.4 Solanum lycopersicum HOM05D005421 ORTHO05D007601 2.8e-96 356.3 222 79.3
Sopen01g043590 Solanum pennellii HOM05D005421 ORTHO05D007601 2.8e-96 356.3 222 79.3
Aqoxy2G02863 Aquilegia oxysepala HOM05D005421 ORTHO05D007601 1.1e-95 354.4 222 81.5
HanXRQChr01g0011821 Helianthus annuus HOM05D005421 ORTHO05D007601 1.1e-95 354.4 215 81.4
BcaB06g29166 Brassica carinata HOM05D005421 ORTHO05D007601 1.8e-95 353.6 190 88.9
CANSAT54G2596 Cannabis sativa HOM05D005421 ORTHO05D007601 1.8e-95 353.6 225 80.4
Glyma.10G149900 Glycine max HOM05D005421 ORTHO05D007601 1.8e-95 353.6 219 81.3
TWI56G0052 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 1.8e-95 353.6 390 74.6
Lj5g0011296 Lotus japonicus HOM05D005421 ORTHO05D007601 2.4e-95 353.2 222 80.6
Actinidia35540 Actinidia chinensis HOM05D005421 ORTHO05D007601 3.1e-95 352.8 222 78.4
Psat6g151720 Pisum sativum HOM05D005421 ORTHO05D007601 3.1e-95 352.8 222 81.1
Gohir.D10G110800 Gossypium hirsutum HOM05D005421 ORTHO05D007601 4.1e-95 352.4 380 70.5
Gorai.011G122100 Gossypium raimondii HOM05D005421 ORTHO05D007601 4.1e-95 352.4 380 70.5
Ciclev10001489m.g Citrus clementina HOM05D005421 ORTHO05D007601 5.4e-95 352.1 190 87.4
Cc02_g34540 Coffea canephora HOM05D005421 ORTHO05D007601 5.4e-95 352.1 223 80.7
BraA04t18563Z Brassica rapa HOM05D005421 ORTHO05D007601 7.0e-95 351.7 211 82.5
Gohir.A10G155100 Gossypium hirsutum HOM05D005421 ORTHO05D007601 7.0e-95 351.7 224 78.1
Lsat_1_v5_gn_7_73220 Lactuca sativa HOM05D005421 ORTHO05D007601 7.0e-95 351.7 221 79.2
Migut.B01005 Erythranthe guttata HOM05D005421 ORTHO05D007601 9.1e-95 351.3 225 79.1
PGR031G1007 Punica granatum HOM05D005421 ORTHO05D007601 1.2e-94 350.9 223 78.0
FAN02G3486 Fragaria x ananassa HOM05D005421 ORTHO05D007601 2.0e-94 350.1 234 77.4
TAR636G1951 Trochodendron aralioides HOM05D005421 ORTHO05D007601 2.7e-94 349.7 222 79.3
GSVIVG01031188001 Vitis vinifera HOM05D005421 ORTHO05D007601 3.5e-94 349.4 222 78.4
Atru.chr2.115 Acer truncatum HOM05D005421 ORTHO05D007601 4.5e-94 349.0 222 79.7
Ca_10154_v3 Cicer arietinum L. HOM05D005421 ORTHO05D007601 4.5e-94 349.0 222 80.2
Ca_29832_v3 Cicer arietinum L. HOM05D005421 ORTHO05D007601 4.5e-94 349.0 222 80.2
Peaxi162Scf00037g01816 Petunia axillaris HOM05D005421 ORTHO05D007601 5.9e-94 348.6 222 79.3
SalBow1G5723 Salvia bowleyana HOM05D005421 ORTHO05D007601 7.7e-94 348.2 223 78.5
Eucgr.H03270 Eucalyptus grandis HOM05D005421 ORTHO05D007601 1.7e-93 347.1 389 73.8
Medtr1g083720 Medicago truncatula HOM05D005421 ORTHO05D007601 6.6e-93 345.1 190 84.7
HPP92_020212 Vanilla planifolia HOM05D005421 ORTHO05D007601 6.6e-93 345.1 213 81.7
HPP92_020232 Vanilla planifolia HOM05D005421 ORTHO05D007601 6.6e-93 345.1 213 81.7
MBI18_g04564_MAGBIO Magnolia biondii HOM05D005421 ORTHO05D007601 1.5e-92 344.0 222 78.4
AUR62005243 Chenopodium quinoa HOM05D005421 ORTHO05D007601 1.9e-92 343.6 190 85.8
Ah.04g161240 Amaranthus hybridus HOM05D005421 ORTHO05D007601 2.5e-92 343.2 190 84.7
DCAR_004503 Daucus carota HOM05D005421 ORTHO05D007601 3.3e-92 342.8 219 76.7
VMungo0720G1843 Vigna mungo HOM05D005421 ORTHO05D007601 3.3e-92 342.8 188 85.1
Lalb_Chr21g0310441 Lupinus albus HOM05D005421 ORTHO05D007601 5.6e-92 342.0 188 83.5
EL10Ac4g09870 Beta vulgaris HOM05D005421 ORTHO05D007601 9.5e-92 341.3 190 84.7
Dinv30846 Davidia involucrata HOM05D005421 ORTHO05D007601 9.5e-92 341.3 221 79.2
Duzib150G0691 Durio zibethinus HOM05D005421 ORTHO05D007601 4.7e-91 339.0 221 78.7
Hund07118 Selenicereus undatus HOM05D005421 ORTHO05D007601 4.7e-91 339.0 190 83.7
Sc16g0008670 Simmondsia chinensis HOM05D005421 ORTHO05D007601 6.1e-91 338.6 190 84.2
COL.COLO4_26689 Corchorus olitorius HOM05D005421 ORTHO05D007601 1.4e-90 337.4 397 58.2
Zm00001eb095730 Zea mays HOM05D005421 ORTHO05D007601 2.3e-90 336.7 190 83.7
CDE02G0330 Ceratophyllum demersum HOM05D005421 ORTHO05D007601 8.9e-90 334.7 222 75.2
Oeu045895.1 Olea europaea HOM05D005421 ORTHO05D007601 1.5e-89 334.0 399 59.9
Os09g0103600 Oryza sativa ssp. japonica HOM05D005421 ORTHO05D007601 4.4e-89 332.4 190 82.1
Nitab4.5_0003248g0020 Nicotiana tabacum HOM05D005421 ORTHO05D007601 1.7e-88 330.5 212 75.5
vmacro01533 Vaccinium macrocarpon HOM05D005421 ORTHO05D007601 1.4e-87 327.4 274 65.0
Mapoly0138s0022 Marchantia polymorpha HOM05D005421 ORTHO05D007601 3.2e-87 326.2 190 81.6
Rhsim11G0092200 Rhododendron simsii HOM05D005421 ORTHO05D007601 4.1e-87 325.9 271 65.3
AagrBONN_evm.TU.Sc2ySwM_117.208 Anthoceros agrestis HOM05D005421 ORTHO05D007601 1.9e-84 317.0 190 78.4
AUR62000721 Chenopodium quinoa HOM05D005421 ORTHO05D007601 3.3e-84 316.2 167 88.0
Pp3c1_35390 Physcomitrium patens HOM05D005421 ORTHO05D007601 4.3e-84 315.8 223 72.2
CBR_g27792 Chara braunii HOM05D005421 ORTHO05D007601 9.5e-84 314.7 190 77.9
SMO361G0640 Selaginella moellendorffii HOM05D005421 ORTHO05D007601 2.3e-82 310.1 190 76.8
arahy.Tifrunner.gnm1.ann1.1MC3I0 Arachis hypogaea HOM05D005421 ORTHO05D007601 8.9e-82 308.1 266 59.8
COL.COLO4_07356 Corchorus olitorius HOM05D005421 ORTHO05D007601 2.0e-81 307.0 176 80.1
arahy.Tifrunner.gnm1.ann1.MB2RBZ Arachis hypogaea HOM05D005421 ORTHO05D007601 2.6e-81 306.6 206 71.4
TWI38G1969 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 1.3e-80 304.3 377 49.6
Dinv24409 Davidia involucrata HOM05D005421 ORTHO05D007601 1.6e-78 297.4 218 72.0
FAN09G4258 Fragaria x ananassa HOM05D000389 ORTHO05D000287 2.3e-77 293.5 185 76.8
Nn4g25707 Nelumbo nucifera HOM05D005421 ORTHO05D007601 8.3e-72 275.0 222 68.5
Cre12.g503400 Chlamydomonas reinhardtii HOM05D005421 ORTHO05D007601 3.0e-69 266.5 190 63.2
Peaxi162Scf00404g00814 Petunia axillaris HOM05D005421 ORTHO05D007601 1.1e-66 258.1 222 63.1
MCO01G394 Micromonas commoda HOM05D005421 ORTHO05D007601 1.3e-56 224.6 185 56.8
Haze_27467 Corylus avellana HOM05D005421 ORTHO05D007601 1.7e-53 214.2 184 54.9
Potri.005G021600 Populus trichocarpa HOM05D005421 ORTHO05D007601 3.1e-50 203.4 170 64.1
PRCOL_00004539 Prasinoderma coloniale HOM05D005421 ORTHO05D007601 4.0e-50 203.0 211 51.2
Lj9C202T10 Lonicera japonica HOM05D005421 ORTHO05D007601 3.3e-44 183.3 97 83.5
SEGI_13779 Sequoiadendron giganteum HOM05D005421 ORTHO05D007601 2.2e-40 170.6 94 81.9
Prupe.6G317400 Prunus persica HOM05D005421 ORTHO05D007601 1.2e-38 164.9 124 69.4
Lj9A202T65 Lonicera japonica HOM05D005421 ORTHO05D007601 1.3e-37 161.4 127 69.3
SEGI_07889 Sequoiadendron giganteum HOM05D005421 ORTHO05D007601 5.0e-24 116.3 150 48.0
ATR0469G001 Amborella trichopoda HOM05D005421 ORTHO05D007601 7.9e-22 109.0 70 72.9
ATR1164G001 Amborella trichopoda HOM05D005421 ORTHO05D007601 7.9e-22 109.0 70 72.9
TAR362G1077 Trochodendron aralioides HOM05D005421 ORTHO05D026565 6.9e-18 95.9 85 68.2
BcaB06g29163 Brassica carinata HOM05D005421 ORTHO05D031077 7.2e-15 85.9 207 66.7
RcHm_v2.0_Chr7g0209371 Rosa chinensis HOM05D005421 ORTHO05D007601 2.7e-14 84.0 53 67.9
BcaB06g27834 Brassica carinata HOM05D005421 ORTHO05D031867 2.3e-13 80.9 69 63.8
Lj3g0025046 Lotus japonicus HOM05D005421 ORTHO05D026565 4.3e-12 76.6 60 63.3
Dinv05263 Davidia involucrata HOM05D002902 ORTHO05D008934 1.2e-09 68.6 43 69.8
BcaB06g29165 Brassica carinata HOM05D011401 ORTHO05D018605 1.0e-08 65.5 131 37.4
ATR0693G223 Amborella trichopoda HOM05D005421 ORTHO05D031077 7.2e-07 59.3 29 93.1


User provided reference genes

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