Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G1010 Aethionema arabicum HOM05D006616 ORTHO05D008435 6.7e-252 873.6 466 100.0
AL4G39000 Arabidopsis lyrata HOM05D006616 ORTHO05D008435 8.3e-186 654.1 472 78.0
AT2G41020 Arabidopsis thaliana HOM05D006616 ORTHO05D008435 1.5e-182 643.3 473 77.6
Sp4g23340 Schrenkiella parvula HOM05D006616 ORTHO05D008435 3.3e-182 642.1 471 77.3
Thhalv10002504m.g Eutrema salsugineum HOM05D006616 ORTHO05D008435 8.9e-180 634.0 460 78.3
Carub.0004s2335 Capsella rubella HOM05D006616 ORTHO05D008435 1.6e-168 596.7 468 73.7
CARHR136140 Cardamine hirsuta HOM05D006616 ORTHO05D008435 1.9e-161 573.2 414 78.5
C04p68740 Brassica napus HOM05D006616 ORTHO05D008435 4.3e-158 562.0 470 72.6
BcaC02g12875 Brassica carinata HOM05D006616 ORTHO05D008435 5.6e-158 561.6 472 72.5
BraA04t18591Z Brassica rapa HOM05D006616 ORTHO05D002641 1.8e-156 556.6 466 72.3
A04p31340 Brassica napus HOM05D006616 ORTHO05D002641 4.4e-155 552.0 463 72.8
BolC4t28379H Brassica oleracea HOM05D006616 ORTHO05D008435 1.1e-153 547.4 463 71.9
THA.LOC104815412 Tarenaya hassleriana HOM05D006616 ORTHO05D008435 2.8e-149 532.7 477 66.5
Atru.chr1.1509 Acer truncatum HOM05D006616 ORTHO05D008435 2.8e-117 426.4 494 55.5
Dinv27270 Davidia involucrata HOM05D006616 ORTHO05D008435 6.9e-116 421.8 496 56.5
MSTRG.24176 Avicennia marina HOM05D006616 ORTHO05D008435 7.7e-115 418.3 447 58.4
Hma1.2p1_2178F.1_g316210 Hydrangea macrophylla HOM05D006616 ORTHO05D008435 7.7e-115 418.3 466 58.4
SGA_v2.0_scaffold25G11136 Striga asiatica HOM05D006616 ORTHO05D008435 2.9e-114 416.4 452 57.5
GSVIVG01025818001 Vitis vinifera HOM05D006616 ORTHO05D008435 1.1e-113 414.5 493 55.8
Rhsim11G0071400 Rhododendron simsii HOM05D006616 ORTHO05D008435 1.4e-113 414.1 468 57.1
HanXRQChr05g0149371 Helianthus annuus HOM05D006616 ORTHO05D008435 3.0e-111 406.4 455 56.7
Migut.N03264 Erythranthe guttata HOM05D006616 ORTHO05D008435 3.9e-111 406.0 467 56.1
ECA246G4188 Erigeron canadensis HOM05D006616 ORTHO05D008435 1.1e-110 404.4 457 56.5
CSS0027023 Camellia sinensis var. sinensis HOM05D006616 ORTHO05D008435 5.7e-110 402.1 458 57.2
TAR622G0026 Trochodendron aralioides HOM05D006616 ORTHO05D008435 9.7e-110 401.4 466 57.1
Sabra06G0021500 Salix brachista HOM05D006616 ORTHO05D008435 1.3e-109 401.0 451 56.5
SalBow2G2978 Salvia bowleyana HOM05D006616 ORTHO05D008435 1.3e-109 401.0 479 47.8
Ca_02795_v3 Cicer arietinum L. HOM05D006616 ORTHO05D008435 1.7e-109 400.6 459 55.8
Oeu038315.2 Olea europaea HOM05D006616 ORTHO05D008435 1.7e-109 400.6 501 53.3
Actinidia03423 Actinidia chinensis HOM05D006616 ORTHO05D008435 2.2e-109 400.2 468 56.0
VMungo0720G0485 Vigna mungo HOM05D006616 ORTHO05D008435 6.3e-109 398.7 474 55.1
Potri.006G032200 Populus trichocarpa HOM05D006616 ORTHO05D008435 1.1e-108 397.9 453 55.0
Manes.09G002500 Manihot esculenta HOM05D006616 ORTHO05D008435 2.4e-108 396.7 454 55.7
PGR042G1816 Punica granatum HOM05D006616 ORTHO05D008435 7.0e-108 395.2 472 55.1
Eucgr.A02183 Eucalyptus grandis HOM05D006616 ORTHO05D008435 1.2e-107 394.4 451 56.5
Prupe.7G020500 Prunus persica HOM05D006616 ORTHO05D008435 2.0e-107 393.7 501 51.7
Lj5g0015037 Lotus japonicus HOM05D006616 ORTHO05D008435 4.5e-107 392.5 460 56.1
Peaxi162Scf00066g00130 Petunia axillaris HOM05D006616 ORTHO05D008435 4.5e-107 392.5 449 56.3
CANSAT78G0100 Cannabis sativa HOM05D006616 ORTHO05D008435 1.0e-106 391.3 484 53.9
MBI16_g32949_MAGBIO Magnolia biondii HOM05D006616 ORTHO05D008435 2.2e-106 390.2 489 52.6
arahy.Tifrunner.gnm1.ann1.QA0LD5 Arachis hypogaea HOM05D006616 ORTHO05D008435 5.0e-106 389.0 462 56.7
Lalb_Chr21g0316821 Lupinus albus HOM05D006616 ORTHO05D008435 8.5e-106 388.3 452 56.9
Phvul.007G243700 Phaseolus vulgaris HOM05D006616 ORTHO05D008435 1.9e-105 387.1 474 54.9
TWI74G0800 Tripterygium wilfordii HOM05D006616 ORTHO05D008435 1.9e-105 387.1 472 54.9
Cc10_g12770 Coffea canephora HOM05D006616 ORTHO05D008435 3.2e-105 386.3 465 54.2
Ah.13g077310 Amaranthus hybridus HOM05D006616 ORTHO05D008435 5.5e-105 385.6 466 54.3
Gohir.A11G305800 Gossypium hirsutum HOM05D006616 ORTHO05D008435 7.2e-105 385.2 450 54.7
Hund19065 Selenicereus undatus HOM05D006616 ORTHO05D008435 7.2e-105 385.2 466 55.4
CSS0040058 Camellia sinensis var. sinensis HOM05D006616 ORTHO05D008435 9.4e-105 384.8 445 56.9
arahy.Tifrunner.gnm1.ann1.958W0C Arachis hypogaea HOM05D006616 ORTHO05D008435 1.2e-104 384.4 462 56.3
Gohir.D11G321200 Gossypium hirsutum HOM05D006616 ORTHO05D008435 4.7e-104 382.5 443 54.4
PSO478G1375 Papaver somniferum HOM05D006616 ORTHO05D008435 6.1e-104 382.1 495 51.9
Psat6g087360 Pisum sativum HOM05D006616 ORTHO05D008435 8.0e-104 381.7 456 54.2
Nn3g18184 Nelumbo nucifera HOM05D006616 ORTHO05D008435 1.0e-103 381.3 467 55.5
MD00G1150000 Malus domestica HOM05D006616 ORTHO05D008435 1.4e-103 380.9 475 53.3
TPR.G13802 Trifolium pratense HOM05D006616 ORTHO05D008435 1.4e-103 380.9 458 54.4
Gorai.007G351400 Gossypium raimondii HOM05D006616 ORTHO05D008435 1.8e-103 380.6 450 53.6
Os01g0916300 Oryza sativa ssp. japonica HOM05D006616 ORTHO05D008435 5.2e-103 379.0 453 55.6
AUR62018417 Chenopodium quinoa HOM05D006616 ORTHO05D008435 6.7e-103 378.6 479 53.7
AUR62021025 Chenopodium quinoa HOM05D006616 ORTHO05D008435 5.7e-102 375.6 474 53.2
Cfa019948 Carpinus fangiana HOM05D006616 ORTHO05D008435 9.7e-102 374.8 484 53.9
Aqoxy3G00148 Aquilegia oxysepala HOM05D006616 ORTHO05D008435 1.7e-101 374.0 469 54.4
CiPaw.10G044000 Carya illinoinensis HOM05D006616 ORTHO05D008435 2.8e-101 373.2 505 52.3
Ciclev10011646m.g Citrus clementina HOM05D006616 ORTHO05D008435 2.8e-101 373.2 465 55.1
Medtr1g051155 Medicago truncatula HOM05D006616 ORTHO05D008435 2.8e-101 373.2 453 55.0
QL07p014063 Quercus lobata HOM05D006616 ORTHO05D008435 4.8e-101 372.5 495 52.1
CAN.G526.15 Capsicum annuum HOM05D006616 ORTHO05D008435 8.2e-101 371.7 463 54.2
Lj7A350T24 Lonicera japonica HOM05D006616 ORTHO05D008435 9.1e-100 368.2 516 45.0
CDE04G3611 Ceratophyllum demersum HOM05D006616 ORTHO05D008435 1.2e-99 367.9 447 54.6
Duzib128G1745 Durio zibethinus HOM05D006616 ORTHO05D008435 2.7e-99 366.7 471 51.0
RcHm_v2.0_Chr3g0494671 Rosa chinensis HOM05D006616 ORTHO05D008435 3.5e-99 366.3 465 53.1
Thecc.05G123900 Theobroma cacao HOM05D006616 ORTHO05D008435 4.5e-99 365.9 467 50.7
Glyma.02G162000 Glycine max HOM05D006616 ORTHO05D008435 7.7e-99 365.2 467 54.0
ATR0326G030 Amborella trichopoda HOM05D006616 ORTHO05D008435 2.2e-98 363.6 487 52.4
EL10Ac3g07308 Beta vulgaris HOM05D006616 ORTHO05D008435 2.5e-97 360.1 460 53.7
Zm00001eb364810 Zea mays HOM05D006616 ORTHO05D008435 7.2e-97 358.6 454 55.3
HPP92_023122 Vanilla planifolia HOM05D006616 ORTHO05D008435 3.6e-96 356.3 446 54.3
DCAR_014373 Daucus carota HOM05D006616 ORTHO05D008435 1.0e-95 354.8 447 53.5
Solyc11g005110.3 Solanum lycopersicum HOM05D006616 ORTHO05D008435 1.5e-94 350.9 463 52.7
Sopen11g001110 Solanum pennellii HOM05D006616 ORTHO05D008435 9.8e-94 348.2 463 52.3
CsaV3_3G040470 Cucumis sativus L. HOM05D006616 ORTHO05D008435 2.8e-93 346.7 517 44.1
unitig_52.g17546 Utricularia gibba HOM05D006616 ORTHO05D008435 3.8e-90 336.3 454 51.1
FAN26G1972 Fragaria x ananassa HOM05D006616 ORTHO05D008435 1.1e-89 334.7 462 51.5
FAN28G1824 Fragaria x ananassa HOM05D006616 ORTHO05D008435 4.2e-89 332.8 459 51.9
Sed0024074 Sechium edule HOM05D006616 ORTHO05D008435 7.2e-89 332.0 500 46.8
PSO017G2359 Papaver somniferum HOM05D006616 ORTHO05D008435 9.4e-89 331.6 388 55.7
FAN19G2668 Fragaria x ananassa HOM05D006616 ORTHO05D008435 6.8e-87 325.5 467 50.1
Lsat_1_v5_gn_6_110180 Lactuca sativa HOM05D006616 ORTHO05D008435 8.0e-80 302.0 445 49.2
Pp3c10_1890 Physcomitrium patens HOM05D006616 ORTHO05D008435 5.2e-79 299.3 563 41.4
Pp3c10_1896 Physcomitrium patens HOM05D006616 ORTHO05D008435 5.2e-79 299.3 563 41.4
Mapoly0043s0041 Marchantia polymorpha HOM05D006616 ORTHO05D008435 3.4e-78 296.6 546 42.1
Nitab4.5_0001168g0150 Nicotiana tabacum HOM05D006616 ORTHO05D008435 1.7e-74 284.3 459 42.7
Haze_20291 Corylus avellana HOM05D006616 ORTHO05D008435 5.8e-70 269.2 353 55.8
FvH4_1g29230 Fragaria vesca HOM05D006616 ORTHO05D008435 3.2e-68 263.5 451 47.2
ClCG10G015990 Citrullus lanatus HOM05D006616 ORTHO05D008435 4.6e-67 259.6 480 43.5
MELO3C009780.2 Cucumis melo HOM05D006616 ORTHO05D008435 3.5e-59 233.4 501 37.9
Nitab4.5_0003863g0020 Nicotiana tabacum HOM05D006616 ORTHO05D008435 1.9e-49 201.1 254 48.8
AagrBONN_evm.TU.Sc2ySwM_228.200 Anthoceros agrestis HOM05D006616 ORTHO05D008435 5.4e-44 183.0 288 39.9
Cpa.g.sc33.190 Carica papaya HOM05D006616 ORTHO05D008435 1.0e-42 178.7 227 48.5
Sc13g0000840 Simmondsia chinensis HOM05D006616 ORTHO05D008435 9.6e-41 172.2 216 47.7
SEGI_15760 Sequoiadendron giganteum HOM05D006616 ORTHO05D008435 1.8e-39 167.9 121 71.9
Hma1.2p1_2178F.1_g316200 Hydrangea macrophylla HOM05D006616 ORTHO05D008435 9.9e-38 162.2 272 39.7
SEGI_28853 Sequoiadendron giganteum HOM05D006616 ORTHO05D008435 6.0e-35 152.9 360 38.9
SMO339G0010 Selaginella moellendorffii HOM05D006616 ORTHO05D008435 1.8e-31 141.4 99 73.7
vmacro00862 Vaccinium macrocarpon HOM05D006616 ORTHO05D008435 4.5e-30 136.7 127 63.0
FAN23G2418 Fragaria x ananassa HOM05D006616 ORTHO05D008435 4.2e-28 130.2 83 80.7
Actinidia25416 Actinidia chinensis HOM05D006616 ORTHO05D008435 1.2e-27 128.6 224 39.3
Nitab4.5_0003863g0030 Nicotiana tabacum HOM05D006616 ORTHO05D008435 1.2e-27 128.6 192 42.7
CBR_g8767 Chara braunii HOM05D006616 ORTHO05D008435 3.3e-25 120.6 412 33.3
COL.COLO4_33517 Corchorus olitorius HOM05D006616 ORTHO05D008435 1.1e-23 115.5 147 42.2
Migut.C01363 Erythranthe guttata HOM05D006616 ORTHO05D008435 4.0e-23 113.6 163 44.8
SHI24850 Sapria himalayana HOM05D006616 ORTHO05D008435 5.3e-23 113.2 152 45.4
Psat7g065560 Pisum sativum HOM05D006616 ORTHO05D008435 1.3e-18 98.6 143 42.0
Psat1g016240 Pisum sativum HOM05D006616 ORTHO05D008435 3.0e-18 97.4 143 41.3
MCO09G511 Micromonas commoda HOM05D006616 ORTHO05D008435 2.1e-16 91.3 375 35.7
Cre12.g527600 Chlamydomonas reinhardtii HOM05D006616 ORTHO05D008435 6.9e-15 86.3 93 46.2
BcaC02g07966 Brassica carinata HOM05D001681 ORTHO05D001589 1.2e-14 85.5 50 82.0
PSO478G1191 Papaver somniferum HOM05D006616 ORTHO05D008435 5.9e-14 83.2 191 38.7
vmacro00863 Vaccinium macrocarpon HOM05D006616 ORTHO05D008435 7.2e-12 76.3 90 48.9
MBI16_g47221_MAGBIO Magnolia biondii HOM05D006616 ORTHO05D008435 9.7e-09 65.9 158 34.2
Actinidia29490 Actinidia chinensis HOM05D006616 ORTHO05D008435 4.5e-06 57.0 100 39.0


User provided reference genes

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