Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG2G890 Aethionema arabicum HOM05D005554 ORTHO05D007823 0.0e+00 1464.5 775 100.0
Sp2g00970 Schrenkiella parvula HOM05D005554 ORTHO05D007823 0.0e+00 1283.1 778 88.2
Thhalv10023292m.g Eutrema salsugineum HOM05D005554 ORTHO05D007823 0.0e+00 1281.2 778 88.6
Carub.0002s0117 Capsella rubella HOM05D005554 ORTHO05D007823 0.0e+00 1278.5 778 88.2
AT1G63680 Arabidopsis thaliana HOM05D005554 ORTHO05D007823 0.0e+00 1269.2 779 87.3
CARHR047660 Cardamine hirsuta HOM05D005554 ORTHO05D007823 0.0e+00 1266.5 778 88.0
AL2G11550 Arabidopsis lyrata HOM05D005554 ORTHO05D007823 0.0e+00 1266.1 779 88.2
BcaB07g31556 Brassica carinata HOM05D005554 ORTHO05D007823 0.0e+00 1249.6 778 85.3
BcaC04g22690 Brassica carinata HOM05D005554 ORTHO05D007823 0.0e+00 1241.1 777 85.8
A09p13810 Brassica napus HOM05D005554 ORTHO05D007823 0.0e+00 1232.2 771 85.1
BraA09t37033Z Brassica rapa HOM05D005554 ORTHO05D007823 0.0e+00 1231.5 771 85.3
C09p16520 Brassica napus HOM05D005554 ORTHO05D007823 0.0e+00 1229.5 771 85.7
BolC9t54561H Brassica oleracea HOM05D005554 ORTHO05D007823 0.0e+00 1227.6 771 85.3
THA.LOC104823588 Tarenaya hassleriana HOM05D005554 ORTHO05D007823 0.0e+00 1209.5 787 80.3
Gohir.D12G231000 Gossypium hirsutum HOM05D005554 ORTHO05D007823 0.0e+00 1077.8 780 73.8
Duzib205G0518 Durio zibethinus HOM05D005554 ORTHO05D007823 5.3e-312 1073.9 783 73.4
Prupe.5G101100 Prunus persica HOM05D005554 ORTHO05D007823 5.3e-312 1073.5 743 74.6
Gohir.A12G229900 Gossypium hirsutum HOM05D005554 ORTHO05D007823 2.1e-311 1072.0 778 74.0
MD06G1085100 Malus domestica HOM05D005554 ORTHO05D007823 2.1e-311 1072.0 738 74.7
Gorai.008G247200 Gossypium raimondii HOM05D005554 ORTHO05D007823 2.7e-311 1071.6 780 73.8
Cpa.g.sc74.56 Carica papaya HOM05D005554 ORTHO05D007823 1.1e-310 1069.7 769 74.9
CsaV3_5G002730 Cucumis sativus L. HOM05D005554 ORTHO05D007823 6.8e-310 1067.0 787 73.7
Atru.chr9.2175 Acer truncatum HOM05D005554 ORTHO05D007823 2.0e-309 1065.4 766 71.9
QL12p032791 Quercus lobata HOM05D005554 ORTHO05D007823 7.6e-309 1063.5 779 72.1
Ciclev10018956m.g Citrus clementina HOM05D005554 ORTHO05D007823 1.3e-308 1062.8 765 72.7
Thecc.03G279900 Theobroma cacao HOM05D005554 ORTHO05D007823 1.3e-308 1062.8 781 71.6
CANSAT21G2493 Cannabis sativa HOM05D005554 ORTHO05D007823 2.2e-308 1062.0 788 71.6
CiPaw.12G092300 Carya illinoinensis HOM05D005554 ORTHO05D007823 3.8e-308 1061.2 779 74.1
Nn6g33413 Nelumbo nucifera HOM05D005554 ORTHO05D007823 3.8e-308 1061.2 777 71.0
Oeu064085.1 Olea europaea HOM05D005554 ORTHO05D007823 3.8e-308 1061.2 740 73.5
PGR031G2745 Punica granatum HOM05D005554 ORTHO05D007823 6.4e-308 1060.4 768 72.4
TWI15G0555 Tripterygium wilfordii HOM05D005554 ORTHO05D007823 1.1e-307 1059.7 782 71.5
TAR375G0921 Trochodendron aralioides HOM05D005554 ORTHO05D007823 2.4e-307 1058.5 758 71.6
Peaxi162Scf00119g01015 Petunia axillaris HOM05D005554 ORTHO05D007823 5.4e-307 1057.4 737 73.5
Dinv38934 Davidia involucrata HOM05D005554 ORTHO05D007823 1.6e-306 1055.8 780 70.8
PGSC0003DMG402012338 Solanum tuberosum HOM05D005554 ORTHO05D007823 3.0e-305 1051.6 777 71.3
Cc08_g14820 Coffea canephora HOM05D005554 ORTHO05D007823 6.6e-305 1050.4 765 70.3
Aqoxy7G00299 Aquilegia oxysepala HOM05D005554 ORTHO05D007823 8.7e-305 1050.0 762 71.1
FAN04G0002 Fragaria x ananassa HOM05D005554 ORTHO05D007823 8.7e-305 1050.0 777 71.2
RcHm_v2.0_Chr7g0197491 Rosa chinensis HOM05D005554 ORTHO05D007823 8.7e-305 1050.0 789 71.0
MELO3C005683.2 Cucumis melo HOM05D005554 ORTHO05D007823 1.9e-304 1048.9 734 77.1
FAN18G3000 Fragaria x ananassa HOM05D005554 ORTHO05D007823 2.5e-304 1048.5 783 71.1
Sopen08g029470 Solanum pennellii HOM05D005554 ORTHO05D007823 3.3e-304 1048.1 780 71.2
FAN08G3292 Fragaria x ananassa HOM05D005554 ORTHO05D007823 9.6e-304 1046.6 781 71.2
Solyc08g081170.4 Solanum lycopersicum HOM05D005554 ORTHO05D007823 9.6e-304 1046.6 780 70.9
Eucgr.D01840 Eucalyptus grandis HOM05D005554 ORTHO05D007823 1.2e-303 1046.2 753 72.2
Sc01g0009640 Simmondsia chinensis HOM05D005554 ORTHO05D007823 2.1e-303 1045.4 744 75.3
Lalb_Chr05g0224711 Lupinus albus HOM05D005554 ORTHO05D007823 2.8e-303 1045.0 781 70.0
COL.COLO4_34475 Corchorus olitorius HOM05D005554 ORTHO05D007823 3.6e-303 1044.6 716 75.3
CSS0044545 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 6.2e-303 1043.9 762 71.0
FAN13G2706 Fragaria x ananassa HOM05D005554 ORTHO05D007823 5.2e-302 1040.8 776 71.0
Nitab4.5_0001615g0110 Nicotiana tabacum HOM05D005554 ORTHO05D007823 6.9e-302 1040.4 731 72.1
Migut.E01089 Erythranthe guttata HOM05D005554 ORTHO05D007823 2.0e-301 1038.9 770 70.0
PSO478G3044 Papaver somniferum HOM05D005554 ORTHO05D007823 3.4e-301 1038.1 766 70.1
PSO782G1990 Papaver somniferum HOM05D005554 ORTHO05D007823 1.4e-299 1032.7 765 70.1
Manes.02G019800 Manihot esculenta HOM05D005554 ORTHO05D007823 5.4e-299 1030.8 789 70.7
arahy.Tifrunner.gnm1.ann1.C4WXPV Arachis hypogaea HOM05D005554 ORTHO05D007823 9.3e-299 1030.0 771 72.5
Ah.10g034840 Amaranthus hybridus HOM05D005554 ORTHO05D007823 2.1e-298 1028.9 763 70.0
Lj2C185T6 Lonicera japonica HOM05D005554 ORTHO05D007823 2.7e-298 1028.5 770 69.1
arahy.Tifrunner.gnm1.ann1.CVD0A8 Arachis hypogaea HOM05D005554 ORTHO05D007823 2.3e-297 1025.4 771 72.2
MSTRG.13839 Avicennia marina HOM05D005554 ORTHO05D007823 3.0e-297 1025.0 780 67.9
DCAR_000617 Daucus carota HOM05D005554 ORTHO05D007823 5.1e-297 1024.2 778 68.6
SalBow1G4020 Salvia bowleyana HOM05D005554 ORTHO05D007823 8.7e-297 1023.5 725 71.4
Potri.001G103300 Populus trichocarpa HOM05D005554 ORTHO05D007823 1.5e-296 1022.7 781 69.0
AUR62003173 Chenopodium quinoa HOM05D005554 ORTHO05D007823 1.9e-296 1022.3 759 70.9
EL10Ac6g14928 Beta vulgaris HOM05D005554 ORTHO05D007823 1.6e-295 1019.2 759 72.5
Hma1.2p1_0377F.1_g139310 Hydrangea macrophylla HOM05D005554 ORTHO05D007823 6.9e-294 1013.8 727 72.1
CAN.G774.53 Capsicum annuum HOM05D005554 ORTHO05D007823 1.2e-293 1013.1 710 74.5
Nitab4.5_0010813g0010 Nicotiana tabacum HOM05D005554 ORTHO05D007823 1.5e-293 1012.7 775 68.9
Hund14815 Selenicereus undatus HOM05D005554 ORTHO05D007823 4.9e-292 1007.7 777 67.6
Glyma.05G208600 Glycine max HOM05D005554 ORTHO05D007823 6.4e-292 1007.3 742 71.4
Glyma.05G208921 Glycine max HOM05D005554 ORTHO05D007823 6.4e-292 1007.3 742 71.4
Phvul.002G290300 Phaseolus vulgaris HOM05D005554 ORTHO05D007823 8.4e-292 1006.9 753 70.9
VMungo0251G0638 Vigna mungo HOM05D005554 ORTHO05D007823 2.4e-291 1005.4 794 68.4
Glyma.08G015200 Glycine max HOM05D005554 ORTHO05D007823 3.2e-291 1005.0 792 68.7
Actinidia14567 Actinidia chinensis HOM05D005554 ORTHO05D007823 9.3e-291 1003.4 703 72.3
Ca_17525_v3 Cicer arietinum L. HOM05D005554 ORTHO05D007823 2.3e-289 998.8 754 68.8
Psat7g032760 Pisum sativum HOM05D005554 ORTHO05D007823 6.7e-289 997.3 758 68.7
Lj4g0004686 Lotus japonicus HOM05D005554 ORTHO05D007823 2.5e-288 995.3 777 68.1
Sabra01G0078000 Salix brachista HOM05D005554 ORTHO05D007823 9.9e-285 983.4 820 65.6
unitig_26.g9706 Utricularia gibba HOM05D005554 ORTHO05D007823 6.4e-284 980.7 746 68.1
TPR.G12960 Trifolium pratense HOM05D005554 ORTHO05D007823 1.1e-283 979.9 753 68.5
Medtr8g098345 Medicago truncatula HOM05D005554 ORTHO05D007823 1.5e-280 969.5 744 69.0
ECA246G2370 Erigeron canadensis HOM05D005554 ORTHO05D007823 3.7e-279 964.9 732 69.1
AUR62007990 Chenopodium quinoa HOM05D005554 ORTHO05D007823 1.8e-278 962.6 707 71.6
ClCG01G002630 Citrullus lanatus HOM05D005554 ORTHO05D007823 3.1e-278 961.8 692 72.1
Lsat_1_v5_gn_3_6620 Lactuca sativa HOM05D005554 ORTHO05D007823 4.9e-276 954.5 751 67.4
ATR0680G162 Amborella trichopoda HOM05D005554 ORTHO05D007823 6.5e-276 954.1 753 64.9
HanXRQChr06g0165871 Helianthus annuus HOM05D005554 ORTHO05D007823 6.0e-274 947.6 748 67.1
MBI18_g45367_MAGBIO Magnolia biondii HOM05D005554 ORTHO05D007823 2.3e-273 945.7 656 73.8
Haze_08788 Corylus avellana HOM05D005554 ORTHO05D007823 6.7e-273 944.1 780 68.6
CDE05G1777 Ceratophyllum demersum HOM05D005554 ORTHO05D007823 2.8e-271 938.7 786 63.6
FvH4_5g02610 Fragaria vesca HOM05D005554 ORTHO05D007823 3.7e-271 938.3 729 69.1
Sed0016596 Sechium edule HOM05D005554 ORTHO05D007823 8.2e-271 937.2 684 71.3
vmacro11364 Vaccinium macrocarpon HOM05D005554 ORTHO05D007823 5.0e-268 927.9 802 62.2
SGA_v2.0_scaffold144G35937 Striga asiatica HOM05D005554 ORTHO05D007823 5.1e-257 891.3 729 65.4
Gohir.A03G016800 Gossypium hirsutum HOM05D005554 ORTHO05D007823 7.0e-230 801.2 543 73.5
Gorai.003G158300 Gossypium raimondii HOM05D005554 ORTHO05D007823 2.0e-229 799.7 543 73.3
Cfa012222 Carpinus fangiana HOM05D005554 ORTHO05D007823 2.8e-226 789.3 638 70.8
AagrBONN_evm.TU.Sc2ySwM_228.1600 Anthoceros agrestis HOM05D005554 ORTHO05D007823 1.8e-222 776.5 730 56.2
Mapoly0091s0082 Marchantia polymorpha HOM05D005554 ORTHO05D007823 1.6e-221 773.5 749 55.7
Os10g0548900 Oryza sativa ssp. japonica HOM05D005554 ORTHO05D007823 2.9e-220 769.2 722 57.2
Pp3c24_18820 Physcomitrium patens HOM05D005554 ORTHO05D007823 4.0e-217 758.8 740 53.2
Zm00001eb391750 Zea mays HOM05D005554 ORTHO05D007823 7.0e-214 748.0 719 56.3
HPP92_014728 Vanilla planifolia HOM05D005554 ORTHO05D007823 4.1e-206 722.2 570 61.8
SMO147G0132 Selaginella moellendorffii HOM05D005554 ORTHO05D007823 1.1e-203 714.1 531 64.4
CBR_g32224 Chara braunii HOM05D005554 ORTHO05D007823 1.2e-194 684.1 529 63.1
Pp3c23_15810 Physcomitrium patens HOM05D005554 ORTHO05D007823 4.6e-181 639.0 518 60.4
Gohir.D03G151100 Gossypium hirsutum HOM05D005554 ORTHO05D007823 8.4e-175 618.2 414 73.4
GSVIVG01019746001 Vitis vinifera HOM05D005554 ORTHO05D007823 4.8e-162 575.9 403 72.0
HPP92_020853 Vanilla planifolia HOM05D005554 ORTHO05D007823 5.7e-155 552.4 414 64.3
Lj2C0T8 Lonicera japonica HOM05D005554 ORTHO05D007823 3.7e-138 496.5 343 72.9
HPP92_008494 Vanilla planifolia HOM05D005554 ORTHO05D007823 1.4e-129 468.0 269 83.3
MCO12G378 Micromonas commoda HOM05D005554 ORTHO05D007823 1.2e-96 358.6 492 42.9
PRCOL_00002248 Prasinoderma coloniale HOM05D005554 ORTHO05D007823 4.4e-91 340.1 682 34.0
CAN.G20.10 Capsicum annuum HOM05D005554 ORTHO05D007823 5.4e-89 333.2 278 62.9
HPP92_008493 Vanilla planifolia HOM05D005554 ORTHO05D007823 3.5e-88 330.5 263 61.6
Oeu007749.1 Olea europaea HOM05D005554 ORTHO05D007823 3.1e-84 317.4 607 39.4
Lj2C0T9 Lonicera japonica HOM05D005554 ORTHO05D007823 3.9e-71 273.9 286 55.2
Cre12.g519900 Chlamydomonas reinhardtii HOM05D005554 ORTHO05D007823 1.3e-66 258.8 585 32.6
Actinidia02000 Actinidia chinensis HOM05D005554 ORTHO05D007823 9.3e-65 252.7 351 45.3
BcaB04g18522 Brassica carinata HOM05D005554 ORTHO05D021652 1.3e-45 189.1 121 80.2
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 6.3e-45 186.8 151 68.2
SEGI_34096 Sequoiadendron giganteum HOM05D005554 ORTHO05D007823 4.3e-38 164.1 99 75.8
CSS0006848 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 1.5e-35 155.6 83 84.3
BcaB06g26524 Brassica carinata HOM05D005554 ORTHO05D021652 2.9e-26 124.8 159 47.2
MD14G1106300 Malus domestica HOM05D005554 ORTHO05D007823 4.4e-22 110.9 54 88.9
MD14G1106100 Malus domestica HOM05D005554 ORTHO05D026402 1.1e-17 96.3 95 54.7
HPP92_008492 Vanilla planifolia HOM05D005554 ORTHO05D026402 2.5e-17 95.1 132 46.2
Sabra03G0091300 Salix brachista HOM05D008679 ORTHO05D010804 1.0e-15 89.7 103 48.5
BcaB07g30213 Brassica carinata HOM05D005554 ORTHO05D021652 1.5e-14 85.9 75 66.7
MD14G1106200 Malus domestica HOM05D005554 ORTHO05D007823 2.9e-10 71.6 41 78.0
Actinidia02001 Actinidia chinensis HOM05D005554 ORTHO05D026402 1.1e-09 69.7 68 54.4
Pp3c5_9920 Physcomitrium patens HOM05D005554 ORTHO05D007823 1.6e-08 65.9 82 43.9
Pp3c3_2590 Physcomitrium patens HOM05D005554 ORTHO05D313840 2.0e-06 58.9 81 42.0


User provided reference genes

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