Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG2G7300 Aethionema arabicum HOM05D004594 ORTHO05D005225 0.0e+00 2157.1 1355 100.0
CARHR145490 Cardamine hirsuta HOM05D004594 ORTHO05D005225 0.0e+00 1417.9 1369 70.5
Carub.0005s0198 Capsella rubella HOM05D004594 ORTHO05D005225 0.0e+00 1395.2 1368 68.1
Sp2g14100 Schrenkiella parvula HOM05D004594 ORTHO05D005225 0.0e+00 1364.4 1369 70.0
AL5G12800 Arabidopsis lyrata HOM05D004594 ORTHO05D005225 0.0e+00 1356.3 1366 68.7
AT2G03150 Arabidopsis thaliana HOM05D004594 ORTHO05D005225 0.0e+00 1327.4 1366 67.1
Thhalv10005550m.g Eutrema salsugineum HOM05D004594 ORTHO05D005225 0.0e+00 1273.8 1358 68.9
C09p31000 Brassica napus HOM05D004594 ORTHO05D005225 0.0e+00 1247.3 1348 68.0
BcaC04g21505 Brassica carinata HOM05D004594 ORTHO05D005225 0.0e+00 1240.7 1349 68.0
BolC9t55959H Brassica oleracea HOM05D004594 ORTHO05D005225 0.0e+00 1233.8 1349 68.1
A09p24110 Brassica napus HOM05D004594 ORTHO05D005225 0.0e+00 1232.2 1347 67.0
BraA09t38011Z Brassica rapa HOM05D004594 ORTHO05D005225 0.0e+00 1232.2 1347 67.0
BcaB07g30683 Brassica carinata HOM05D004594 ORTHO05D005225 0.0e+00 1227.2 1348 65.9
THA.LOC104824075 Tarenaya hassleriana HOM05D004594 ORTHO05D005225 0.0e+00 1144.8 1403 61.3
Ciclev10030522m.g Citrus clementina HOM05D004594 ORTHO05D005225 8.8e-236 821.6 1463 43.4
QL03p068116 Quercus lobata HOM05D004594 ORTHO05D005225 1.2e-224 784.6 1469 42.9
Gohir.D04G191200 Gossypium hirsutum HOM05D004594 ORTHO05D005225 5.0e-223 779.2 1229 47.1
Gorai.012G186600 Gossypium raimondii HOM05D004594 ORTHO05D005225 1.6e-221 774.2 1229 46.7
Duzib248G1210 Durio zibethinus HOM05D004594 ORTHO05D005225 1.0e-220 771.5 1440 42.7
CiPaw.05G132100 Carya illinoinensis HOM05D004594 ORTHO05D005225 2.0e-219 767.3 1255 45.7
CANSAT64G0453 Cannabis sativa HOM05D004594 ORTHO05D005225 1.3e-218 764.6 1439 44.0
Thecc.02G342500 Theobroma cacao HOM05D004594 ORTHO05D005225 1.1e-217 761.5 1472 42.5
Eucgr.G02485 Eucalyptus grandis HOM05D004594 ORTHO05D005225 4.5e-216 756.1 1461 41.5
Dinv02961 Davidia involucrata HOM05D004594 ORTHO05D005225 6.5e-215 752.3 1475 42.7
Manes.05G104800 Manihot esculenta HOM05D004594 ORTHO05D005225 8.0e-213 745.3 1459 42.8
Cfa008959 Carpinus fangiana HOM05D004594 ORTHO05D005225 4.0e-212 743.0 1457 43.0
FAN22G0563 Fragaria x ananassa HOM05D004594 ORTHO05D005225 1.3e-210 738.0 1416 42.6
TWI75G1472 Tripterygium wilfordii HOM05D004594 ORTHO05D005225 3.7e-210 736.5 1453 43.6
CiPaw.06G087400 Carya illinoinensis HOM05D004594 ORTHO05D005225 1.1e-209 734.9 1447 40.8
FAN17G1193 Fragaria x ananassa HOM05D004594 ORTHO05D005225 1.8e-209 734.2 1414 42.5
FAN07G2218 Fragaria x ananassa HOM05D004594 ORTHO05D005225 2.7e-208 730.3 1423 42.2
FvH4_4g31060 Fragaria vesca HOM05D004594 ORTHO05D005225 2.9e-207 726.9 1430 42.1
MD16G1069300 Malus domestica HOM05D004594 ORTHO05D005225 1.5e-206 724.5 1444 42.2
GSVIVG01019950001 Vitis vinifera HOM05D004594 ORTHO05D005225 1.2e-205 721.5 1469 43.5
Manes.01G034200 Manihot esculenta HOM05D004594 ORTHO05D005225 3.6e-205 719.9 1470 41.6
Potri.010G166100 Populus trichocarpa HOM05D004594 ORTHO05D005225 4.7e-205 719.5 1497 40.5
RcHm_v2.0_Chr4g0439441 Rosa chinensis HOM05D004594 ORTHO05D005225 1.8e-204 717.6 1455 40.8
TWI79G0308 Tripterygium wilfordii HOM05D004594 ORTHO05D005225 8.8e-204 715.3 1433 43.1
Ca_04825_v3 Cicer arietinum L. HOM05D004594 ORTHO05D005225 1.2e-203 714.9 1489 43.0
Haze_11988 Corylus avellana HOM05D004594 ORTHO05D005225 4.4e-203 713.0 1530 39.7
Phvul.003G045700 Phaseolus vulgaris HOM05D004594 ORTHO05D005225 3.7e-202 709.9 1487 39.9
C02p51140 Brassica napus HOM05D004594 ORTHO05D005225 1.8e-201 707.6 1080 46.8
DCAR_013185 Daucus carota HOM05D004594 ORTHO05D005225 2.0e-200 704.1 1505 42.7
ClCG09G021930 Citrullus lanatus HOM05D004594 ORTHO05D005225 3.5e-200 703.4 1269 44.4
Psat2g116320 Pisum sativum HOM05D004594 ORTHO05D005225 1.0e-199 701.8 1479 41.5
VMungo1215G3128 Vigna mungo HOM05D004594 ORTHO05D005225 1.0e-199 701.8 1481 40.9
Lj2g0016635 Lotus japonicus HOM05D004594 ORTHO05D005225 2.9e-199 700.3 1269 44.5
Atru.chr11.1750 Acer truncatum HOM05D004594 ORTHO05D005225 1.5e-198 698.0 734 58.9
Prupe.1G277900 Prunus persica HOM05D004594 ORTHO05D005225 1.5e-198 698.0 1462 42.5
Glyma.01G051400 Glycine max HOM05D004594 ORTHO05D005225 7.2e-198 695.7 1457 42.4
FAN12G0764 Fragaria x ananassa HOM05D004594 ORTHO05D005225 8.0e-197 692.2 1455 40.8
Glyma.02G109900 Glycine max HOM05D004594 ORTHO05D005225 1.8e-196 691.0 1506 42.4
TPR.G34709 Trifolium pratense HOM05D004594 ORTHO05D005225 1.2e-195 688.3 1293 44.2
Sed0022637 Sechium edule HOM05D004594 ORTHO05D005225 1.5e-195 688.0 1226 44.4
Actinidia11790 Actinidia chinensis HOM05D004594 ORTHO05D005225 4.4e-195 686.4 1476 40.4
PGR119G1944 Punica granatum HOM05D004594 ORTHO05D005225 5.7e-195 686.0 1213 43.6
Hund25219 Selenicereus undatus HOM05D004594 ORTHO05D005225 5.9e-192 676.0 1230 43.4
CsaV3_5G025180 Cucumis sativus L. HOM05D004594 ORTHO05D005225 3.8e-191 673.3 1501 41.0
arahy.Tifrunner.gnm1.ann1.8R27D6 Arachis hypogaea HOM05D004594 ORTHO05D005225 7.3e-190 669.1 1525 40.6
EL10Ac3g06731 Beta vulgaris HOM05D004594 ORTHO05D005225 1.6e-189 667.9 1461 39.8
AUR62035898 Chenopodium quinoa HOM05D004594 ORTHO05D005225 1.6e-189 667.9 1451 39.4
Peaxi162Scf00329g00617 Petunia axillaris HOM05D004594 ORTHO05D005225 1.4e-188 664.8 1150 45.4
Sopen04g003850 Solanum pennellii HOM05D004594 ORTHO05D005225 4.4e-187 659.8 1448 39.0
Nitab4.5_0000129g0280 Nicotiana tabacum HOM05D004594 ORTHO05D005225 1.3e-186 658.3 1277 42.5
Sabra10G0126400 Salix brachista HOM05D004594 ORTHO05D005225 2.9e-186 657.1 1544 39.4
Sc11g0002090 Simmondsia chinensis HOM05D004594 ORTHO05D005225 8.3e-186 655.6 1207 43.1
MELO3C002967.2 Cucumis melo HOM05D004594 ORTHO05D005225 9.2e-185 652.1 1475 40.3
TAR371G0293 Trochodendron aralioides HOM05D004594 ORTHO05D005225 6.0e-184 649.4 1465 38.4
Rhsim09G0077000 Rhododendron simsii HOM05D004594 ORTHO05D005225 6.6e-183 646.0 1315 39.3
Nn1g04524 Nelumbo nucifera HOM05D004594 ORTHO05D005225 1.1e-182 645.2 1493 39.8
Nitab4.5_0001419g0070 Nicotiana tabacum HOM05D004594 ORTHO05D005225 4.7e-181 639.8 1317 40.1
Lalb_Chr10g0098431 Lupinus albus HOM05D004594 ORTHO05D005225 2.3e-180 637.5 1530 40.7
AUR62035342 Chenopodium quinoa HOM05D004594 ORTHO05D005225 1.4e-177 628.2 1187 41.8
Cc00_g08470 Coffea canephora HOM05D004594 ORTHO05D005225 7.0e-177 625.9 1341 40.3
CAN.G194.5 Capsicum annuum HOM05D004594 ORTHO05D005225 8.6e-175 619.0 1413 39.3
Migut.E00588 Erythranthe guttata HOM05D004594 ORTHO05D005225 1.2e-173 615.1 1210 42.7
Lsat_1_v5_gn_3_33900 Lactuca sativa HOM05D004594 ORTHO05D005225 1.4e-172 611.7 1175 42.6
Aqoxy3G03454 Aquilegia oxysepala HOM05D004594 ORTHO05D005225 1.2e-168 598.6 1202 39.4
ECA246G2651 Erigeron canadensis HOM05D004594 ORTHO05D005225 1.3e-167 595.1 1448 41.0
Ah.13g075020 Amaranthus hybridus HOM05D004594 ORTHO05D005225 8.6e-167 592.4 1454 37.6
SGA_v2.0_scaffold140G35452 Striga asiatica HOM05D004594 ORTHO05D005225 3.4e-163 580.5 1173 40.8
arahy.Tifrunner.gnm1.ann1.KB2NSX Arachis hypogaea HOM05D004594 ORTHO05D005225 7.6e-163 579.3 1659 36.4
Solyc04g008680.4 Solanum lycopersicum HOM05D004594 ORTHO05D005225 1.7e-162 578.2 1354 39.3
PSO013G0146 Papaver somniferum HOM05D004594 ORTHO05D005225 6.4e-162 576.2 1302 38.6
PSO832G1080 Papaver somniferum HOM05D004594 ORTHO05D005225 6.4e-162 576.2 1464 36.5
ECA233G5935 Erigeron canadensis HOM05D004594 ORTHO05D005225 9.2e-161 572.4 1476 36.8
Medtr5g042000 Medicago truncatula HOM05D004594 ORTHO05D005225 2.7e-160 570.9 1551 39.5
HanXRQChr17g0540651 Helianthus annuus HOM05D004594 ORTHO05D005225 9.6e-158 562.4 1421 42.0
Cpa.g.sc25.130 Carica papaya HOM05D004594 ORTHO05D005225 5.4e-153 546.6 1473 37.7
MBI06_g33529_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 3.1e-148 530.8 785 45.4
Gohir.A04G146601 Gossypium hirsutum HOM05D004594 ORTHO05D005225 1.9e-145 521.5 594 59.1
Oeu044046.4 Olea europaea HOM05D004594 ORTHO05D005225 8.7e-143 512.7 1029 40.2
TAR629G1990 Trochodendron aralioides HOM05D004594 ORTHO05D005225 7.4e-142 509.6 1301 36.7
CDE07G1889 Ceratophyllum demersum HOM05D004594 ORTHO05D005225 2.1e-141 508.1 1229 39.6
HanXRQChr08g0224741 Helianthus annuus HOM05D004594 ORTHO05D005225 2.4e-140 504.6 1439 37.2
Lsat_1_v5_gn_8_32581 Lactuca sativa HOM05D004594 ORTHO05D005225 4.9e-138 496.9 1243 37.2
HPP92_001998 Vanilla planifolia HOM05D004594 ORTHO05D005225 1.1e-126 459.1 1226 36.6
HanXRQChr14g0429131 Helianthus annuus HOM05D004594 ORTHO05D005225 6.3e-125 453.4 1122 39.9
ATR0564G229 Amborella trichopoda HOM05D004594 ORTHO05D005225 2.4e-116 424.9 1324 35.3
SHI24774 Sapria himalayana HOM05D004594 ORTHO05D005225 6.9e-116 423.3 1168 33.3
Zm00001eb384230 Zea mays HOM05D004594 ORTHO05D005225 7.4e-110 403.3 1445 33.4
unitig_52.g17301 Utricularia gibba HOM05D004594 ORTHO05D005225 1.2e-107 396.0 776 41.5
Zm00001eb277410 Zea mays HOM05D004594 ORTHO05D005225 1.1e-100 372.9 1220 34.9
CDE04G0114 Ceratophyllum demersum HOM05D004594 ORTHO05D005225 4.5e-99 367.5 1382 31.8
SEGI_16638 Sequoiadendron giganteum HOM05D004594 ORTHO05D005225 1.1e-89 336.3 672 40.2
HanXRQChr08g0225211 Helianthus annuus HOM05D004594 ORTHO05D005225 1.0e-87 329.7 1296 32.2
Gohir.1Z049516 Gossypium hirsutum HOM05D004594 ORTHO05D005225 1.2e-83 316.2 632 37.3
Pp3c4_10880 Physcomitrium patens HOM05D004594 ORTHO05D005225 1.4e-52 213.0 690 32.3
BcaC03g17185 Brassica carinata HOM05D004594 ORTHO05D005225 2.3e-50 205.7 732 32.4
SMO172G0003 Selaginella moellendorffii HOM05D004594 ORTHO05D005225 3.9e-50 204.9 292 38.7
CBR_g5747 Chara braunii HOM05D004594 ORTHO05D005225 8.6e-50 203.8 319 37.9
Mapoly0102s0024 Marchantia polymorpha HOM05D004594 ORTHO05D005225 1.4e-47 196.4 840 32.3
AagrBONN_evm.TU.Sc2ySwM_340.1878 Anthoceros agrestis HOM05D004594 ORTHO05D005225 1.8e-47 196.1 1096 26.3
BolC2t11204H Brassica oleracea HOM05D004594 ORTHO05D005225 5.1e-42 177.9 740 32.3
Pp3c12_12730 Physcomitrium patens HOM05D004594 ORTHO05D005225 5.1e-42 177.9 1268 25.3
Lj3E852T1 Lonicera japonica HOM05D004594 ORTHO05D005225 6.9e-31 141.0 171 45.0
Os06g0562700 Oryza sativa ssp. japonica HOM05D004594 ORTHO05D005225 1.7e-29 136.3 369 36.0
Oeu032954.1 Olea europaea HOM05D004594 ORTHO05D005225 3.2e-28 132.1 92 67.4
Atru.chr11.1748 Acer truncatum HOM05D004594 ORTHO05D005225 1.2e-27 130.2 366 41.0
A02p33250 Brassica napus HOM05D004594 ORTHO05D005225 1.8e-26 126.3 74 78.4
Rhsim04G0150600 Rhododendron simsii HOM05D004594 ORTHO05D005225 1.8e-26 126.3 179 43.6
BcaB05g23630 Brassica carinata HOM05D004594 ORTHO05D005225 3.9e-26 125.2 149 53.7
Lj3E852G2 Lonicera japonica HOM05D004594 ORTHO05D005225 6.2e-24 117.9 244 41.4
Oeu034639.1 Olea europaea HOM05D004594 ORTHO05D005225 6.2e-24 117.9 241 40.7
MBI02_g24140_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 1.0e-18 100.5 123 50.4
A02p33260 Brassica napus HOM05D004594 ORTHO05D005225 1.1e-17 97.1 281 32.7
vmacro10769 Vaccinium macrocarpon HOM05D004594 ORTHO05D005225 1.8e-15 89.7 785 26.9
MBI02_g24139_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 9.0e-15 87.4 69 60.9
Cre06.g283634 Chlamydomonas reinhardtii HOM05D004594 ORTHO05D005225 4.5e-14 85.1 309 23.6
BraA02t08348Z Brassica rapa HOM05D004594 ORTHO05D005225 2.9e-13 82.4 98 48.0
BcaB07g33689 Brassica carinata HOM05D004594 ORTHO05D021612 2.5e-12 79.3 63 65.1
Lsat_1_v5_gn_3_92661 Lactuca sativa HOM05D004594 ORTHO05D005225 1.6e-11 76.6 86 44.2
Lsat_1_v5_gn_4_108040 Lactuca sativa HOM05D004594 ORTHO05D005225 4.6e-11 75.1 63 52.4
A02p33240 Brassica napus HOM05D004594 ORTHO05D005225 2.5e-09 69.3 167 40.1
unitig_52.g17300 Utricularia gibba HOM05D004594 ORTHO05D005225 9.7e-09 67.4 492 33.7
Lsat_1_v5_gn_1_53021 Lactuca sativa HOM05D004594 ORTHO05D005225 1.6e-08 66.6 103 36.9
RcHm_v2.0_Chr3g0458311 Rosa chinensis HOM05D004594 ORTHO05D005225 1.1e-07 63.9 87 41.4
Oeu052406.1 Olea europaea HOM05D004594 ORTHO05D005225 5.3e-07 61.6 92 53.3
MBI05_g14664_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 9.0e-07 60.8 50 56.0
Potri.008G089100 Populus trichocarpa HOM05D004340 ORTHO05D005225 1.2e-06 60.5 80 45.0


User provided reference genes

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