Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG2G18620 Aethionema arabicum HOM05D005002 ORTHO05D006016 5.7e-71 270.8 135 100.0
AT4G31720 Arabidopsis thaliana HOM05D005002 ORTHO05D006016 1.6e-68 262.7 135 96.3
AL7G20310 Arabidopsis lyrata HOM05D005002 ORTHO05D006016 2.0e-68 262.3 135 95.6
Sp7g29520 Schrenkiella parvula HOM05D005002 ORTHO05D006016 2.0e-68 262.3 135 95.6
BcaC09g51961 Brassica carinata HOM05D005002 ORTHO05D006016 3.5e-68 261.5 135 95.6
C01p07220 Brassica napus HOM05D005002 ORTHO05D006016 3.5e-68 261.5 135 95.6
BolC1t00713H Brassica oleracea HOM05D005002 ORTHO05D006016 3.5e-68 261.5 135 95.6
BcaNung05179 Brassica carinata HOM05D005002 ORTHO05D006016 4.5e-68 261.2 135 95.6
A01p06560 Brassica napus HOM05D005002 ORTHO05D006016 4.5e-68 261.2 135 95.6
BraA01t00615Z Brassica rapa HOM05D005002 ORTHO05D006016 4.5e-68 261.2 135 95.6
Carub.0007s0884 Capsella rubella HOM05D005002 ORTHO05D006016 2.9e-67 258.5 135 94.1
Thhalv10026546m.g Eutrema salsugineum HOM05D005002 ORTHO05D006016 5.0e-67 257.7 135 94.1
BraA08t33811Z Brassica rapa HOM05D005002 ORTHO05D006016 6.6e-67 257.3 135 93.3
A08p18490 Brassica napus HOM05D005002 ORTHO05D006016 1.2e-65 253.1 135 91.1
BcaB03g12714 Brassica carinata HOM05D005002 ORTHO05D006016 3.6e-65 251.5 135 91.9
THA.LOC104819944 Tarenaya hassleriana HOM05D005002 ORTHO05D006016 5.4e-61 237.7 136 87.5
BcaC01g01070 Brassica carinata HOM05D005002 ORTHO05D006016 1.6e-60 236.1 123 93.5
C03p87650 Brassica napus HOM05D005002 ORTHO05D006016 1.6e-60 236.1 123 93.5
THA.LOC104803866 Tarenaya hassleriana HOM05D005002 ORTHO05D006016 1.3e-59 233.0 135 85.2
Rhsim07G0172200 Rhododendron simsii HOM05D001416 ORTHO05D005885 1.9e-58 229.2 135 82.2
Sed0003546 Sechium edule HOM05D005002 ORTHO05D006016 4.3e-58 228.0 137 80.3
Duzib168G1293 Durio zibethinus HOM05D005002 ORTHO05D006016 3.6e-57 224.9 137 81.0
Gohir.A05G062833 Gossypium hirsutum HOM05D005002 ORTHO05D006016 4.7e-57 224.6 137 81.0
Gohir.A05G062900 Gossypium hirsutum HOM05D005002 ORTHO05D006016 4.7e-57 224.6 137 81.0
Thecc.09G010700 Theobroma cacao HOM05D005002 ORTHO05D006016 6.2e-57 224.2 137 81.8
CAN.G566.59 Capsicum annuum HOM05D005002 ORTHO05D006016 1.4e-56 223.0 136 79.4
Gohir.D05G065400 Gossypium hirsutum HOM05D005002 ORTHO05D006016 1.4e-56 223.0 137 80.3
Gorai.009G066200 Gossypium raimondii HOM05D005002 ORTHO05D006016 1.4e-56 223.0 137 80.3
Gohir.A07G034400 Gossypium hirsutum HOM05D005002 ORTHO05D006016 4.0e-56 221.5 137 79.6
Gohir.D07G038000 Gossypium hirsutum HOM05D005002 ORTHO05D006016 4.0e-56 221.5 137 79.6
Gorai.001G039800 Gossypium raimondii HOM05D005002 ORTHO05D006016 4.0e-56 221.5 137 79.6
PGR044G1228 Punica granatum HOM05D005002 ORTHO05D006016 4.0e-56 221.5 129 84.5
TAR622G0454 Trochodendron aralioides HOM05D005002 ORTHO05D006016 4.0e-56 221.5 137 78.8
Actinidia03570 Actinidia chinensis HOM05D005002 ORTHO05D006016 6.8e-56 220.7 137 79.6
Manes.03G005700 Manihot esculenta HOM05D005002 ORTHO05D006016 6.8e-56 220.7 136 81.6
EL10Ac2g02432 Beta vulgaris HOM05D005002 ORTHO05D006016 8.9e-56 220.3 137 78.8
Glyma.18G054400 Glycine max HOM05D005002 ORTHO05D006016 8.9e-56 220.3 137 81.8
ClCG08G013890 Citrullus lanatus HOM05D005002 ORTHO05D006016 1.2e-55 219.9 137 80.3
vmacro05092 Vaccinium macrocarpon HOM05D005002 ORTHO05D006016 1.2e-55 219.9 138 80.4
GSVIVG01023467001 Vitis vinifera HOM05D005002 ORTHO05D006016 1.2e-55 219.9 137 80.3
Dinv03972 Davidia involucrata HOM05D005002 ORTHO05D006016 1.5e-55 219.5 137 78.8
Nitab4.5_0001110g0170 Nicotiana tabacum HOM05D005002 ORTHO05D006016 1.5e-55 219.5 134 79.1
Phvul.008G002400 Phaseolus vulgaris HOM05D005002 ORTHO05D006016 2.0e-55 219.2 137 81.8
GSVIVG01023464001 Vitis vinifera HOM05D005002 ORTHO05D006016 2.6e-55 218.8 137 78.8
CANSAT25G2804 Cannabis sativa HOM05D005002 ORTHO05D006016 3.4e-55 218.4 137 78.8
Sed0020410 Sechium edule HOM05D005002 ORTHO05D006016 3.4e-55 218.4 137 78.8
Glyma.11G160400 Glycine max HOM05D005002 ORTHO05D006016 4.4e-55 218.0 137 80.3
QL01p029339 Quercus lobata HOM05D005002 ORTHO05D006016 4.4e-55 218.0 135 78.5
Dinv03977 Davidia involucrata HOM05D005002 ORTHO05D006016 5.8e-55 217.6 137 77.4
Peaxi162Scf00459g00833 Petunia axillaris HOM05D005002 ORTHO05D006016 5.8e-55 217.6 134 78.4
Oeu008768.2 Olea europaea HOM05D005002 ORTHO05D006016 7.5e-55 217.2 132 80.3
Prupe.1G399400 Prunus persica HOM05D005002 ORTHO05D006016 7.5e-55 217.2 133 81.2
Solyc12g096470.2 Solanum lycopersicum HOM05D005002 ORTHO05D006016 9.8e-55 216.9 134 78.4
Sopen12g032300 Solanum pennellii HOM05D005002 ORTHO05D006016 9.8e-55 216.9 134 78.4
PGSC0003DMG400029278 Solanum tuberosum HOM05D005002 ORTHO05D006016 9.8e-55 216.9 134 78.4
VMungo1383G3578 Vigna mungo HOM05D005002 ORTHO05D006016 1.3e-54 216.5 137 80.3
CSS0022428 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 2.2e-54 215.7 137 77.4
MD08G1049200 Malus domestica HOM05D005002 ORTHO05D006016 2.2e-54 215.7 133 81.2
RcHm_v2.0_Chr6g0269591 Rosa chinensis HOM05D005002 ORTHO05D006016 2.2e-54 215.7 134 82.1
CSS0035568 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 2.9e-54 215.3 137 77.4
Lalb_Chr08g0234011 Lupinus albus HOM05D005002 ORTHO05D006016 2.9e-54 215.3 137 80.3
Potri.018G013300 Populus trichocarpa HOM05D005002 ORTHO05D006016 3.7e-54 214.9 123 87.8
VMungo1383G2539 Vigna mungo HOM05D005002 ORTHO05D006016 4.9e-54 214.5 137 80.3
BcaC09g51955 Brassica carinata HOM05D005002 ORTHO05D006016 6.4e-54 214.2 125 86.4
Lj1g0025268 Lotus japonicus HOM05D005002 ORTHO05D006016 6.4e-54 214.2 132 82.6
Eucgr.B03202 Eucalyptus grandis HOM05D005002 ORTHO05D006016 8.3e-54 213.8 132 78.8
Sabra18G0017200 Salix brachista HOM05D005002 ORTHO05D006016 8.3e-54 213.8 123 87.0
Medtr7g080740 Medicago truncatula HOM05D005002 ORTHO05D006016 1.4e-53 213.0 135 79.3
TWI34G0825 Tripterygium wilfordii HOM05D005002 ORTHO05D006016 1.4e-53 213.0 133 80.5
arahy.Tifrunner.gnm1.ann1.1V29TX Arachis hypogaea HOM05D005002 ORTHO05D006016 4.1e-53 211.5 140 78.6
Ciclev10009813m.g Citrus clementina HOM05D005002 ORTHO05D006016 4.1e-53 211.5 144 75.7
Cc00_g22050 Coffea canephora HOM05D005002 ORTHO05D006016 4.1e-53 211.5 129 80.6
Lsat_1_v5_gn_6_32161 Lactuca sativa HOM05D005002 ORTHO05D006016 5.4e-53 211.1 137 74.5
PSO478G2205 Papaver somniferum HOM05D005002 ORTHO05D006016 1.6e-52 209.5 130 76.9
PSO782G1729 Papaver somniferum HOM05D005002 ORTHO05D006016 1.6e-52 209.5 130 76.9
FvH4_2g11240 Fragaria vesca HOM05D005002 ORTHO05D006016 2.0e-52 209.1 134 79.9
CSS0010222 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 3.5e-52 208.4 137 75.9
Psat0s2083g0280 Pisum sativum HOM05D005002 ORTHO05D006016 3.5e-52 208.4 135 76.3
HPP92_000490 Vanilla planifolia HOM05D005002 ORTHO05D006016 3.5e-52 208.4 130 78.5
Migut.A00405 Erythranthe guttata HOM05D005002 ORTHO05D006016 6.0e-52 207.6 132 78.8
arahy.Tifrunner.gnm1.ann1.JDP7FN Arachis hypogaea HOM05D005002 ORTHO05D006016 1.0e-51 206.8 147 74.1
Lalb_Chr10g0091021 Lupinus albus HOM05D005002 ORTHO05D006016 1.7e-51 206.1 138 78.3
MSTRG.25811 Avicennia marina HOM05D005002 ORTHO05D006016 2.3e-51 205.7 129 79.1
QL02p017669 Quercus lobata HOM05D005002 ORTHO05D006016 3.0e-51 205.3 132 77.3
TPR.G12644 Trifolium pratense HOM05D005002 ORTHO05D006016 3.0e-51 205.3 142 75.4
Nn3g17630 Nelumbo nucifera HOM05D005002 ORTHO05D006016 5.0e-51 204.5 138 71.7
TPR.G15628 Trifolium pratense HOM05D005002 ORTHO05D006016 8.6e-51 203.8 144 72.9
TWI63G0754 Tripterygium wilfordii HOM05D005002 ORTHO05D006016 8.6e-51 203.8 159 66.0
HanXRQChr14g0453401 Helianthus annuus HOM05D005002 ORTHO05D006016 1.1e-50 203.4 137 71.5
Sc23g0006270 Simmondsia chinensis HOM05D005002 ORTHO05D006016 1.1e-50 203.4 137 73.7
HanXRQChr07g0195931 Helianthus annuus HOM05D005002 ORTHO05D006016 1.9e-50 202.6 137 71.5
MD15G1045700 Malus domestica HOM05D005002 ORTHO05D006016 1.9e-50 202.6 131 78.6
DCAR_020711 Daucus carota HOM05D004285 ORTHO05D006016 2.5e-50 202.2 129 78.3
DCAR_020712 Daucus carota HOM05D005002 ORTHO05D006016 5.6e-50 201.1 128 78.9
BolC3t21083H Brassica oleracea HOM05D000888 ORTHO05D000740 9.5e-50 200.3 108 91.7
FAN24G1669 Fragaria x ananassa HOM05D005002 ORTHO05D006016 2.1e-49 199.1 158 68.4
unitig_92.g28144 Utricularia gibba HOM05D003482 ORTHO05D004194 3.6e-49 198.4 133 72.2
ECA238G2697 Erigeron canadensis HOM05D005002 ORTHO05D006016 6.2e-49 197.6 133 71.4
Os09g0431500 Oryza sativa ssp. japonica HOM05D005002 ORTHO05D006016 8.1e-49 197.2 127 74.8
Aqoxy7G00066 Aquilegia oxysepala HOM05D005002 ORTHO05D006016 1.1e-48 196.8 123 79.7
ATR0691G047 Amborella trichopoda HOM05D005002 ORTHO05D006016 1.2e-47 193.4 131 71.0
Zm00001eb313590 Zea mays HOM05D005002 ORTHO05D006016 1.5e-47 193.0 124 76.6
CDE04G1191 Ceratophyllum demersum HOM05D005002 ORTHO05D006016 9.8e-47 190.3 137 67.9
RcHm_v2.0_Chr2g0161651 Rosa chinensis HOM05D005002 ORTHO05D006016 1.7e-46 189.5 126 76.2
BcaC09g51957 Brassica carinata HOM05D005002 ORTHO05D006016 8.3e-46 187.2 140 75.0
Cfa017847 Carpinus fangiana HOM05D005002 ORTHO05D006016 1.1e-45 186.8 135 71.1
MELO3C011321.2 Cucumis melo HOM05D005002 ORTHO05D006016 3.0e-43 178.7 115 80.0
Hma1.2p1_0192F.1_g083460 Hydrangea macrophylla HOM05D005002 ORTHO05D006016 4.3e-42 174.9 110 78.2
Actinidia14152 Actinidia chinensis HOM05D005002 ORTHO05D006016 9.5e-42 173.7 110 79.1
FAN15G1411 Fragaria x ananassa HOM05D000348 ORTHO05D000244 3.6e-41 171.8 106 82.1
CSS0031521 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 8.1e-41 170.6 110 77.3
AUR62020301 Chenopodium quinoa HOM05D005002 ORTHO05D006016 1.8e-40 169.5 109 77.1
Haze_18362 Corylus avellana HOM05D005002 ORTHO05D006016 3.1e-40 168.7 110 78.2
AUR62037698 Chenopodium quinoa HOM05D005002 ORTHO05D006016 4.0e-40 168.3 105 79.0
SalBow4G2991 Salvia bowleyana HOM05D005002 ORTHO05D006016 5.8e-39 164.5 106 79.2
Ah.09g224730 Amaranthus hybridus HOM05D005002 ORTHO05D006016 1.7e-38 162.9 145 62.1
Ca_06528_v3 Cicer arietinum L. HOM05D005002 ORTHO05D006016 5.4e-37 157.9 108 75.9
Mapoly0011s0105 Marchantia polymorpha HOM05D005002 ORTHO05D006016 3.5e-36 155.2 125 60.8
Pp3c6_16040 Physcomitrium patens HOM05D005002 ORTHO05D006016 3.5e-36 155.2 115 67.0
CDE02G2218 Ceratophyllum demersum HOM05D002187 ORTHO05D002243 6.0e-36 154.5 112 67.9
CARHR239610 Cardamine hirsuta HOM05D005002 ORTHO05D006016 3.0e-35 152.1 82 90.2
COL.COLO4_21113 Corchorus olitorius HOM05D005002 ORTHO05D006016 5.6e-34 147.9 102 72.5
unitig_93.g30701 Utricularia gibba HOM05D005002 ORTHO05D006016 4.0e-32 141.7 133 56.4
COL.COLO4_19003 Corchorus olitorius HOM05D005002 ORTHO05D006016 2.6e-31 139.0 85 84.7
Duzib168G1591 Durio zibethinus HOM05D005002 ORTHO05D006016 9.9e-31 137.1 84 83.3
Duzib150G1286 Durio zibethinus HOM05D005002 ORTHO05D006016 3.5e-28 128.6 75 81.3
Lju41A41T35 Lonicera japonica HOM05D005002 ORTHO05D006016 7.8e-28 127.5 181 43.1
SMO141G0065 Selaginella moellendorffii HOM05D005002 ORTHO05D006016 1.3e-27 126.7 120 57.5
Duzib187G1493 Durio zibethinus HOM05D005002 ORTHO05D006016 6.6e-27 124.4 86 75.6
RcHm_v2.0_Chr2g0161711 Rosa chinensis HOM05D005002 ORTHO05D006016 1.1e-26 123.6 84 76.2
MSTRG.9875 Avicennia marina HOM05D005002 ORTHO05D006016 2.5e-26 122.5 84 77.4
CBR_g30254 Chara braunii HOM05D005002 ORTHO05D006016 4.3e-26 121.7 101 57.4
SMO356G0735 Selaginella moellendorffii HOM05D005002 ORTHO05D006016 5.6e-26 121.3 112 50.0
Aqoxy7G00833 Aquilegia oxysepala HOM05D005002 ORTHO05D006016 3.6e-25 118.6 71 76.1
MBI15_g18374_MAGBIO Magnolia biondii HOM05D005002 ORTHO05D006016 3.1e-24 115.5 138 50.0
SGA_v2.0_scaffold193G40677 Striga asiatica HOM05D005002 ORTHO05D006016 6.9e-24 114.4 94 62.8
PRCOL_00006189 Prasinoderma coloniale HOM05D005002 ORTHO05D006016 1.3e-19 100.1 126 40.5
Lalb_Chr08g0233981 Lupinus albus HOM05D005002 ORTHO05D006016 1.8e-19 99.8 65 80.0
Nitab4.5_0000668g0030 Nicotiana tabacum HOM05D005002 ORTHO05D006016 8.7e-19 97.4 64 73.4
CiPaw.15G092700 Carya illinoinensis HOM05D005002 ORTHO05D006016 1.5e-18 96.7 53 83.0
Lalb_Chr08g0233961 Lupinus albus HOM05D005002 ORTHO05D006016 1.3e-17 93.6 53 79.2
FAN27G2219 Fragaria x ananassa HOM05D005002 ORTHO05D006016 3.1e-16 89.0 50 84.0
MCO01G145 Micromonas commoda HOM05D005002 ORTHO05D006016 1.2e-15 87.0 107 43.0
COL.COLO4_27723 Corchorus olitorius HOM05D005002 ORTHO05D006016 3.4e-15 85.5 52 73.1
FAN20G1660 Fragaria x ananassa HOM05D005002 ORTHO05D006016 9.9e-15 84.0 50 80.0
Phvul.009G222000 Phaseolus vulgaris HOM05D005002 ORTHO05D006016 2.2e-14 82.8 77 54.5
QL12p013723 Quercus lobata HOM05D005002 ORTHO05D006016 1.9e-13 79.7 60 73.3
EL10Ac5g10893 Beta vulgaris HOM05D005002 ORTHO05D006016 9.3e-13 77.4 45 75.6
SEGI_02469 Sequoiadendron giganteum HOM05D005002 ORTHO05D006016 3.5e-12 75.5 62 66.1
Cre16.g657000 Chlamydomonas reinhardtii HOM05D005002 ORTHO05D006016 1.9e-10 69.7 126 36.5
Actinidia25736 Actinidia chinensis HOM05D005002 ORTHO05D006016 1.6e-09 66.6 84 48.8
HanXRQChr14g0435251 Helianthus annuus HOM05D005002 ORTHO05D006016 7.6e-07 57.8 53 58.5


User provided reference genes

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