Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG2G15600 Aethionema arabicum HOM05D000032 ORTHO05D007443 1.2e-124 449.9 235 100.0
Aa31LG2G15620 Aethionema arabicum HOM05D000032 ORTHO05D007443 3.1e-112 408.7 218 99.1
BraA08t33617Z Brassica rapa HOM05D000032 ORTHO05D007443 5.8e-95 351.3 226 85.4
Sp7g32660 Schrenkiella parvula HOM05D000032 ORTHO05D007443 2.9e-94 349.0 224 84.4
A08p16490 Brassica napus HOM05D000032 ORTHO05D007443 1.4e-93 346.7 226 84.5
BcaC01g00863 Brassica carinata HOM05D000032 ORTHO05D007443 4.2e-93 345.1 226 84.1
BolC3t20823H Brassica oleracea HOM05D000032 ORTHO05D007443 4.2e-93 345.1 226 84.1
C03p85330 Brassica napus HOM05D000032 ORTHO05D007443 7.1e-93 344.4 226 84.1
Carub.0007s0539 Capsella rubella HOM05D000032 ORTHO05D007443 7.1e-93 344.4 226 81.9
Thhalv10024759m.g Eutrema salsugineum HOM05D000032 ORTHO05D007443 6.2e-89 331.3 193 89.1
A01p03610 Brassica napus HOM05D000032 ORTHO05D007443 9.0e-88 327.4 227 80.2
BraA01t00347Z Brassica rapa HOM05D000032 ORTHO05D007443 2.0e-87 326.2 227 80.2
AL7G16320 Arabidopsis lyrata HOM05D000032 ORTHO05D007443 1.4e-85 320.1 228 78.9
BcaB03g11802 Brassica carinata HOM05D000032 ORTHO05D007443 2.4e-85 319.3 226 79.6
BcaNung00645 Brassica carinata HOM05D000032 ORTHO05D007443 4.2e-85 318.5 227 79.3
BolC1t00383H Brassica oleracea HOM05D000032 ORTHO05D007443 4.2e-85 318.5 227 79.3
AT4G34910 Arabidopsis thaliana HOM05D000032 ORTHO05D007443 1.6e-84 316.6 220 78.6
CARHR243180 Cardamine hirsuta HOM05D000032 ORTHO05D007443 2.7e-84 315.8 218 77.5
C01p03900 Brassica napus HOM05D000032 ORTHO05D007443 2.5e-82 309.3 227 77.5
THA.LOC104807641 Tarenaya hassleriana HOM05D000032 ORTHO05D007443 1.1e-77 293.9 218 73.4
Duzib147G1507 Durio zibethinus HOM05D000032 ORTHO05D007443 2.5e-77 292.7 221 71.9
Cpa.g.sc125.34 Carica papaya HOM05D000032 ORTHO05D007443 1.2e-76 290.4 221 71.0
Potri.007G021800 Populus trichocarpa HOM05D000032 ORTHO05D007443 1.8e-75 286.6 223 70.0
CANSAT64G0745 Cannabis sativa HOM05D000032 ORTHO05D007443 2.3e-75 286.2 219 70.3
CiPaw.08G149900 Carya illinoinensis HOM05D000032 ORTHO05D007443 1.9e-74 283.1 223 68.6
Thecc.01G077000 Theobroma cacao HOM05D000032 ORTHO05D007443 4.3e-74 282.0 223 68.2
Sabra07G0018900 Salix brachista HOM05D000032 ORTHO05D007443 5.7e-74 281.6 223 69.1
FAN04G2244 Fragaria x ananassa HOM05D000032 ORTHO05D007443 2.8e-73 279.3 216 69.4
RcHm_v2.0_Chr7g0222281 Rosa chinensis HOM05D000032 ORTHO05D007443 3.7e-73 278.9 216 69.4
COL.COLO4_11621 Corchorus olitorius HOM05D000032 ORTHO05D007443 6.3e-73 278.1 218 68.8
Gohir.D11G211100 Gossypium hirsutum HOM05D000032 ORTHO05D007443 6.3e-73 278.1 225 68.9
CSS0045534 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D007443 8.2e-73 277.7 220 69.1
FvH4_5g29390 Fragaria vesca HOM05D000032 ORTHO05D007443 8.2e-73 277.7 216 69.0
FAN13G1203 Fragaria x ananassa HOM05D000032 ORTHO05D007443 8.2e-73 277.7 216 69.0
HanXRQChr11g0323571 Helianthus annuus HOM05D000032 ORTHO05D007443 1.4e-72 276.9 217 67.7
PGR102G1941 Punica granatum HOM05D000032 ORTHO05D007443 1.4e-72 276.9 222 69.4
FAN08G0861 Fragaria x ananassa HOM05D000032 ORTHO05D007443 3.1e-72 275.8 218 69.7
FAN18G2124 Fragaria x ananassa HOM05D000032 ORTHO05D007443 3.1e-72 275.8 216 69.0
Gohir.A11G211800 Gossypium hirsutum HOM05D000032 ORTHO05D007443 3.1e-72 275.8 225 68.9
MD02G1190200 Malus domestica HOM05D000032 ORTHO05D007443 4.1e-72 275.4 218 68.8
QL06p038783 Quercus lobata HOM05D000032 ORTHO05D007443 4.1e-72 275.4 222 66.2
Gorai.007G226800 Gossypium raimondii HOM05D000032 ORTHO05D007443 6.9e-72 274.6 225 68.4
Prupe.6G216200 Prunus persica HOM05D000032 ORTHO05D007443 6.9e-72 274.6 221 67.9
CsaV3_6G044370 Cucumis sativus L. HOM05D000032 ORTHO05D007443 9.0e-72 274.2 201 71.1
Atru.chr3.1066 Acer truncatum HOM05D000032 ORTHO05D007443 2.6e-71 272.7 230 67.0
MELO3C007659.2 Cucumis melo HOM05D000032 ORTHO05D007443 7.6e-71 271.2 201 70.1
Eucgr.H02337 Eucalyptus grandis HOM05D000032 ORTHO05D007443 7.6e-71 271.2 222 67.1
Manes.13G108500 Manihot esculenta HOM05D000032 ORTHO05D007443 7.6e-71 271.2 221 65.6
TWI74G1593 Tripterygium wilfordii HOM05D000032 ORTHO05D007443 7.6e-71 271.2 220 67.7
Cfa006775 Carpinus fangiana HOM05D000032 ORTHO05D007443 1.0e-70 270.8 219 67.1
Actinidia36419 Actinidia chinensis HOM05D000032 ORTHO05D007443 1.3e-70 270.4 223 68.6
Dinv23050 Davidia involucrata HOM05D000032 ORTHO05D007443 1.3e-70 270.4 223 68.6
Haze_03984 Corylus avellana HOM05D000032 ORTHO05D007443 1.7e-70 270.0 220 67.3
AUR62007544 Chenopodium quinoa HOM05D000032 ORTHO05D007443 3.8e-70 268.9 202 70.3
AUR62004035 Chenopodium quinoa HOM05D000032 ORTHO05D007443 1.9e-69 266.5 202 70.3
SGA_v2.0_scaffold121G33068 Striga asiatica HOM05D000032 ORTHO05D007443 1.9e-69 266.5 215 67.9
VMungo0720G2333 Vigna mungo HOM05D000032 ORTHO05D007443 1.9e-69 266.5 219 65.3
Nitab4.5_0001225g0240 Nicotiana tabacum HOM05D000032 ORTHO05D007443 3.2e-69 265.8 225 66.2
Nitab4.5_0010329g0010 Nicotiana tabacum HOM05D000032 ORTHO05D007443 3.2e-69 265.8 222 67.1
Sed0018251 Sechium edule HOM05D000032 ORTHO05D007443 7.2e-69 264.6 203 69.0
ClCG01G017830 Citrullus lanatus HOM05D000032 ORTHO05D007443 9.3e-69 264.2 221 65.6
Ciclev10025201m.g Citrus clementina HOM05D000032 ORTHO05D007443 9.3e-69 264.2 220 65.9
Rhsim10G0094500 Rhododendron simsii HOM05D000032 ORTHO05D007443 9.3e-69 264.2 212 69.3
CAN.G79.11 Capsicum annuum HOM05D000032 ORTHO05D007443 1.2e-68 263.8 219 66.2
Migut.H00321 Erythranthe guttata HOM05D000032 ORTHO05D007443 1.2e-68 263.8 201 67.7
Sc16g0002800 Simmondsia chinensis HOM05D000032 ORTHO05D007443 1.2e-68 263.8 214 67.3
Sopen02g019260 Solanum pennellii HOM05D000032 ORTHO05D007443 1.2e-68 263.8 205 69.3
PGSC0003DMG400021177 Solanum tuberosum HOM05D000032 ORTHO05D007443 1.2e-68 263.8 201 70.6
arahy.Tifrunner.gnm1.ann1.MR2VJ3 Arachis hypogaea HOM05D000032 ORTHO05D007443 1.6e-68 263.5 220 65.9
GSVIVG01007277001 Vitis vinifera HOM05D000032 ORTHO05D007443 2.7e-68 262.7 197 70.6
vmacro04601 Vaccinium macrocarpon HOM05D000032 ORTHO05D007443 3.5e-68 262.3 222 66.2
Glyma.10G152900 Glycine max HOM05D000032 ORTHO05D007443 6.1e-68 261.5 228 64.5
arahy.Tifrunner.gnm1.ann1.11GZ1T Arachis hypogaea HOM05D000032 ORTHO05D007443 7.9e-68 261.2 217 65.4
Phvul.007G179201 Phaseolus vulgaris HOM05D000032 ORTHO05D007443 1.0e-67 260.8 216 65.7
Solyc02g070100.3 Solanum lycopersicum HOM05D000032 ORTHO05D007443 1.0e-67 260.8 201 69.7
MSTRG.23651 Avicennia marina HOM05D000032 ORTHO05D007443 1.8e-67 260.0 197 69.5
TAR381G1241 Trochodendron aralioides HOM05D000032 ORTHO05D007443 3.9e-67 258.8 226 64.6
Medtr1g083130 Medicago truncatula HOM05D000032 ORTHO05D007443 5.1e-67 258.5 220 63.2
Cc07_g07410 Coffea canephora HOM05D000032 ORTHO05D007443 6.7e-67 258.1 223 64.1
Lsat_1_v5_gn_4_158421 Lactuca sativa HOM05D000032 ORTHO05D007443 6.7e-67 258.1 221 66.1
MBI16_g35719_MAGBIO Magnolia biondii HOM05D000032 ORTHO05D007443 8.7e-67 257.7 215 67.4
Nn5g30290 Nelumbo nucifera HOM05D000032 ORTHO05D007443 1.1e-66 257.3 218 64.2
Sed0005463 Sechium edule HOM05D000032 ORTHO05D007443 1.1e-66 257.3 219 64.8
Ah.02g125290 Amaranthus hybridus HOM05D000032 ORTHO05D007443 2.5e-66 256.1 197 68.5
Phvul.007G193500 Phaseolus vulgaris HOM05D000032 ORTHO05D007443 3.3e-66 255.8 217 64.5
Psat6g149960 Pisum sativum HOM05D000032 ORTHO05D007443 7.4e-66 254.6 220 62.7
Oeu014318.2 Olea europaea HOM05D000032 ORTHO05D007443 1.3e-65 253.8 192 71.4
Hund16419 Selenicereus undatus HOM05D000032 ORTHO05D007443 1.6e-65 253.4 202 65.3
Ca_10121_v3 Cicer arietinum L. HOM05D000032 ORTHO05D007443 2.2e-65 253.1 218 61.5
Peaxi162Scf00423g00221 Petunia axillaris HOM05D000032 ORTHO05D007443 2.4e-64 249.6 219 64.8
Lalb_Chr09g0323751 Lupinus albus HOM05D000032 ORTHO05D007443 4.1e-64 248.8 201 64.2
PSO541G1009 Papaver somniferum HOM05D000032 ORTHO05D007443 1.2e-63 247.3 219 63.9
PSO675G5622 Papaver somniferum HOM05D000032 ORTHO05D007443 1.5e-63 246.9 219 63.5
TPR.G6058 Trifolium pratense HOM05D000032 ORTHO05D007443 2.6e-63 246.1 211 63.5
CDE01G0309 Ceratophyllum demersum HOM05D000032 ORTHO05D007443 7.7e-63 244.6 215 63.7
Glyma.20G235400 Glycine max HOM05D000032 ORTHO05D007443 6.5e-62 241.5 160 75.6
Lj5g0020960 Lotus japonicus HOM05D000032 ORTHO05D007443 3.2e-61 239.2 223 60.1
Lj4C166T2 Lonicera japonica HOM05D000032 ORTHO05D007443 9.4e-61 237.7 229 59.0
SHI12020 Sapria himalayana HOM05D000278 ORTHO05D007443 3.6e-60 235.7 191 66.5
DCAR_004695 Daucus carota HOM05D000032 ORTHO05D007443 7.9e-60 234.6 219 62.6
EL10Ac6g15590 Beta vulgaris HOM05D000032 ORTHO05D007443 1.4e-59 233.8 194 64.4
HPP92_011749 Vanilla planifolia HOM05D000032 ORTHO05D007443 2.0e-58 229.9 216 61.1
Cpa.g.sc125.31 Carica papaya HOM05D000032 ORTHO05D007443 7.4e-58 228.0 185 70.3
ATR0739G078 Amborella trichopoda HOM05D000032 ORTHO05D007443 9.7e-58 227.6 207 63.8
SEGI_40001 Sequoiadendron giganteum HOM05D000032 ORTHO05D007443 8.2e-57 224.6 194 65.5
Os03g0728800 Oryza sativa ssp. japonica HOM05D000032 ORTHO05D007443 1.8e-56 223.4 219 56.2
Zm00001eb215620 Zea mays HOM05D000032 ORTHO05D007443 3.4e-55 219.2 217 58.1
arahy.Tifrunner.gnm1.ann1.318AHN Arachis hypogaea HOM05D000032 ORTHO05D007443 3.3e-50 202.6 194 58.8
HanXRQChr10g0318711 Helianthus annuus HOM05D000032 ORTHO05D007443 5.3e-48 195.3 221 52.0
Mapoly0062s0065 Marchantia polymorpha HOM05D000032 ORTHO05D007443 5.3e-48 195.3 217 52.1
Pp3c27_1430 Physcomitrium patens HOM05D000032 ORTHO05D007443 6.5e-46 188.3 224 53.6
CBR_g22358 Chara braunii HOM05D000032 ORTHO05D007443 1.4e-43 180.6 227 49.3
unitig_899.g14589 Utricularia gibba HOM05D000032 ORTHO05D007443 2.3e-43 179.9 185 56.8
Aqoxy3G01532 Aquilegia oxysepala HOM05D000032 ORTHO05D007443 1.2e-34 151.0 109 68.8
SMO116G0033 Selaginella moellendorffii HOM05D000032 ORTHO05D007443 3.5e-31 139.4 202 42.6
PRCOL_00005286 Prasinoderma coloniale HOM05D000032 ORTHO05D007443 3.0e-27 126.3 145 46.9
Thhalv10013368m.g Eutrema salsugineum HOM05D000032 ORTHO05D007443 2.0e-26 123.6 140 57.9
MCO01G015 Micromonas commoda HOM05D000032 ORTHO05D007443 4.5e-23 112.5 211 35.1
SalBow3G3962 Salvia bowleyana HOM05D000032 ORTHO05D026110 1.2e-20 104.4 87 65.5
Cre12.g526850 Chlamydomonas reinhardtii HOM05D000032 ORTHO05D007443 1.6e-20 104.0 248 32.7
Cc01_g21860 Coffea canephora HOM05D000032 ORTHO05D007443 2.1e-20 103.6 78 64.1
Cc07_g21210 Coffea canephora HOM05D000032 ORTHO05D007443 1.3e-17 94.4 78 56.4
PSO675G8515 Papaver somniferum HOM05D000032 ORTHO05D007443 1.7e-17 94.0 98 50.0
Rhsim02G0087100 Rhododendron simsii HOM05D000032 ORTHO05D007443 1.7e-17 94.0 90 56.7
CAN.G680.16 Capsicum annuum HOM05D000058 ORTHO05D014358 1.1e-16 91.3 58 75.9
CAN.G27.58 Capsicum annuum HOM05D000032 ORTHO05D014358 1.6e-15 87.4 78 62.8
RcHm_v2.0_Chr4g0386971 Rosa chinensis HOM05D000032 ORTHO05D026110 4.7e-12 75.9 95 48.4
RcHm_v2.0_Chr4g0413031 Rosa chinensis HOM05D000032 ORTHO05D026110 1.8e-11 73.9 95 47.4
CAN.G1167.3 Capsicum annuum HOM05D000032 ORTHO05D014358 7.0e-08 62.0 54 63.0
RcHm_v2.0_Chr4g0405541 Rosa chinensis HOM05D000032 ORTHO05D026110 1.2e-07 61.2 74 50.0
PGR142G3026 Punica granatum HOM05D000032 ORTHO05D004142 3.9e-06 56.2 74 40.5
Os07g0660000 Oryza sativa ssp. japonica HOM05D000032 ORTHO05D004142 5.0e-06 55.8 52 53.8
Dinv19592 Davidia involucrata HOM05D003670 ORTHO05D004767 8.6e-06 55.1 99 32.3
Hma1.2p1_0042F.1_g025720 Hydrangea macrophylla HOM05D000032 ORTHO05D004142 8.6e-06 55.1 92 33.7
QL02p034454 Quercus lobata HOM05D000032 ORTHO05D004142 8.6e-06 55.1 48 52.1
Rhsim05G0210300 Rhododendron simsii HOM05D007284 ORTHO05D007583 8.6e-06 55.1 54 48.1
Rhsim06G0242600 Rhododendron simsii HOM05D000032 ORTHO05D007583 8.6e-06 55.1 54 48.1
RcHm_v2.0_Chr6g0275441 Rosa chinensis HOM05D000032 ORTHO05D003727 8.6e-06 55.1 48 52.1


User provided reference genes

Program Settings