Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG2G14220 Aethionema arabicum HOM05D006505 ORTHO05D008086 2.3e-135 485.7 271 100.0
Sp1g27520 Schrenkiella parvula HOM05D006505 ORTHO05D008086 4.1e-84 315.5 324 62.0
BraA09t38992Z Brassica rapa HOM05D006505 ORTHO05D008086 7.0e-84 314.7 312 57.4
AL5G22520 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 1.2e-83 313.9 314 58.0
Thhalv10008153m.g Eutrema salsugineum HOM05D006505 ORTHO05D008086 2.0e-83 313.2 334 59.6
A09p34510 Brassica napus HOM05D006505 ORTHO05D008086 1.7e-82 310.1 312 56.7
AT1G31817 Arabidopsis thaliana HOM05D006505 ORTHO05D008086 1.4e-81 307.0 316 61.4
Carub.0001s3014 Capsella rubella HOM05D006505 ORTHO05D008086 1.4e-81 307.0 315 60.0
BcaC05g27199 Brassica carinata HOM05D006505 ORTHO05D008086 9.4e-81 304.3 306 57.5
BolC5t31830H Brassica oleracea HOM05D006505 ORTHO05D008086 9.4e-81 304.3 306 57.5
AL1G45900 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 3.3e-78 295.8 304 61.2
C05p31050 Brassica napus HOM05D006505 ORTHO05D008086 4.4e-78 295.4 323 53.3
BcaB07g32834 Brassica carinata HOM05D006505 ORTHO05D008086 3.1e-76 289.3 326 53.1
CARHR031150 Cardamine hirsuta HOM05D006505 ORTHO05D008086 5.9e-75 285.0 312 53.5
THA.LOC104798517 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 1.6e-67 260.4 274 56.9
THA.LOC104798644 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 2.3e-63 246.5 274 54.4
BcaB03g13787 Brassica carinata HOM05D006505 ORTHO05D008086 1.5e-57 227.3 310 47.4
QL09p007239 Quercus lobata HOM05D006505 ORTHO05D008086 4.9e-53 212.2 172 64.0
Cfa016168 Carpinus fangiana HOM05D006505 ORTHO05D008086 4.5e-51 205.7 169 61.5
Haze_00287 Corylus avellana HOM05D006505 ORTHO05D008086 1.7e-50 203.8 165 61.8
TWI56G0195 Tripterygium wilfordii HOM05D006505 ORTHO05D008086 5.0e-50 202.2 148 68.9
TPR.G33266 Trifolium pratense HOM05D006505 ORTHO05D008086 3.3e-49 199.5 170 61.2
CiPaw.05G198000 Carya illinoinensis HOM05D006505 ORTHO05D008086 5.6e-49 198.7 175 59.4
Ca_04162_v3 Cicer arietinum L. HOM05D006505 ORTHO05D008086 5.6e-49 198.7 171 62.0
Psat5g300640 Pisum sativum HOM05D006505 ORTHO05D008086 7.3e-49 198.4 154 66.9
Lj2g0010245 Lotus japonicus HOM05D006505 ORTHO05D008086 9.5e-49 198.0 154 64.9
CSS0001335 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 1.2e-48 197.6 173 62.4
CSS0032447 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 1.2e-48 197.6 173 62.4
CSS0043282 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 2.8e-48 196.4 173 62.4
Prupe.8G075800 Prunus persica HOM05D006505 ORTHO05D008086 2.8e-48 196.4 171 61.4
CSS0016706 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 3.6e-48 196.1 173 61.8
CSS0048860 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 3.6e-48 196.1 173 61.8
Rhsim11G0024600 Rhododendron simsii HOM05D006505 ORTHO05D008086 3.6e-48 196.1 170 60.6
Lalb_Chr03g0033021 Lupinus albus HOM05D006505 ORTHO05D008086 6.1e-48 195.3 157 65.6
Glyma.09G152000 Glycine max HOM05D006505 ORTHO05D008086 1.0e-47 194.5 158 64.6
Glyma.16G202700 Glycine max HOM05D006505 ORTHO05D008086 1.0e-47 194.5 158 64.6
Atru.chr5.2699 Acer truncatum HOM05D006505 ORTHO05D008086 1.4e-47 194.1 155 67.7
Medtr6g004800 Medicago truncatula HOM05D006505 ORTHO05D008086 1.4e-47 194.1 170 60.0
TPR.G1934 Trifolium pratense HOM05D002510 ORTHO05D006928 1.4e-47 194.1 159 64.2
ClCG10G009230 Citrullus lanatus HOM05D006505 ORTHO05D008086 5.2e-47 192.2 155 63.9
Ciclev10016360m.g Citrus clementina HOM05D006505 ORTHO05D008086 6.8e-47 191.8 161 63.4
MELO3C019016.2 Cucumis melo HOM05D006505 ORTHO05D008086 6.8e-47 191.8 156 60.9
CsaV3_4G009410 Cucumis sativus L. HOM05D006505 ORTHO05D008086 2.6e-46 189.9 155 63.2
vmacro00059 Vaccinium macrocarpon HOM05D006505 ORTHO05D008086 2.6e-46 189.9 149 65.8
Manes.13G075298 Manihot esculenta HOM05D006505 ORTHO05D008086 3.4e-46 189.5 170 58.2
Medtr2g103160 Medicago truncatula HOM05D006505 ORTHO05D008086 4.4e-46 189.1 159 62.3
Sc03g0004060 Simmondsia chinensis HOM05D006505 ORTHO05D008086 4.4e-46 189.1 172 57.6
Lj9C390T7 Lonicera japonica HOM05D006505 ORTHO05D008086 7.5e-46 188.3 164 60.4
Eucgr.D02590 Eucalyptus grandis HOM05D006505 ORTHO05D008086 1.3e-45 187.6 173 56.6
Hund04368 Selenicereus undatus HOM05D000185 ORTHO05D008086 1.3e-45 187.6 160 59.4
Hund04411 Selenicereus undatus HOM05D006505 ORTHO05D008086 1.3e-45 187.6 160 59.4
MD10G1029200 Malus domestica HOM05D006505 ORTHO05D008086 1.7e-45 187.2 157 61.1
RcHm_v2.0_Chr7g0213441 Rosa chinensis HOM05D006505 ORTHO05D008086 1.7e-45 187.2 157 59.9
CANSAT01G1182 Cannabis sativa HOM05D006505 ORTHO05D008086 3.7e-45 186.0 154 62.3
Thecc.05G317100 Theobroma cacao HOM05D006505 ORTHO05D008086 4.9e-45 185.7 171 60.8
Phvul.007G023100 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 1.4e-44 184.1 161 63.4
VMungo0464G0461 Vigna mungo HOM05D006505 ORTHO05D008086 1.4e-44 184.1 158 62.7
arahy.Tifrunner.gnm1.ann1.P5KSQZ Arachis hypogaea HOM05D006505 ORTHO05D008086 1.9e-44 183.7 160 59.4
Phvul.004G125700 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 1.9e-44 183.7 158 64.6
Manes.09G083900 Manihot esculenta HOM05D006505 ORTHO05D008086 2.4e-44 183.3 170 55.3
arahy.Tifrunner.gnm1.ann1.VH9XRT Arachis hypogaea HOM05D006505 ORTHO05D008086 3.2e-44 183.0 160 59.4
MD05G1028600 Malus domestica HOM05D006505 ORTHO05D008086 3.2e-44 183.0 157 59.2
arahy.Tifrunner.gnm1.ann1.XVHH14 Arachis hypogaea HOM05D006505 ORTHO05D008086 4.1e-44 182.6 160 58.8
Duzib177G0740 Durio zibethinus HOM05D006505 ORTHO05D008086 5.4e-44 182.2 157 60.5
MSTRG.25731 Avicennia marina HOM05D006505 ORTHO05D008086 7.0e-44 181.8 156 59.6
Solyc08g075720.3 Solanum lycopersicum HOM05D006505 ORTHO05D008086 1.2e-43 181.0 153 62.7
Sopen08g024370 Solanum pennellii HOM05D006505 ORTHO05D008086 1.2e-43 181.0 153 62.7
PGSC0003DMG400030869 Solanum tuberosum HOM05D006505 ORTHO05D008086 1.2e-43 181.0 153 62.7
Oeu059435.1 Olea europaea HOM05D006505 ORTHO05D008086 1.6e-43 180.6 156 58.3
COL.COLO4_03796 Corchorus olitorius HOM05D006505 ORTHO05D008086 2.7e-43 179.9 158 58.2
Nitab4.5_0000009g0140 Nicotiana tabacum HOM05D006505 ORTHO05D008086 3.5e-43 179.5 159 60.4
FAN13G1156 Fragaria x ananassa HOM05D005388 ORTHO05D006281 6.0e-43 178.7 157 56.7
FAN18G0596 Fragaria x ananassa HOM05D005388 ORTHO05D006281 6.0e-43 178.7 157 56.7
Cc11_g05460 Coffea canephora HOM05D006505 ORTHO05D008086 7.8e-43 178.3 157 59.9
Nitab4.5_0013752g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 1.0e-42 177.9 156 60.9
AUR62014209 Chenopodium quinoa HOM05D006505 ORTHO05D008086 2.3e-42 176.8 160 57.5
Lsat_1_v5_gn_5_56361 Lactuca sativa HOM05D006505 ORTHO05D008086 2.3e-42 176.8 126 70.6
Nitab4.5_0000030g0150 Nicotiana tabacum HOM05D006505 ORTHO05D008086 2.3e-42 176.8 156 59.0
Lsat_1_v5_gn_3_68661 Lactuca sativa HOM05D006505 ORTHO05D008086 3.0e-42 176.4 126 70.6
EL10Ac7g17956 Beta vulgaris HOM05D006505 ORTHO05D008086 3.9e-42 176.0 166 55.4
HanXRQChr10g0282371 Helianthus annuus HOM05D006505 ORTHO05D008086 3.9e-42 176.0 156 58.3
AUR62038510 Chenopodium quinoa HOM05D006505 ORTHO05D008086 6.6e-42 175.3 160 55.6
FAN08G1835 Fragaria x ananassa HOM05D005388 ORTHO05D006281 6.6e-42 175.3 154 56.5
CAN.G900.13 Capsicum annuum HOM05D006505 ORTHO05D008086 8.6e-42 174.9 156 59.6
EL10Ac1g01458 Beta vulgaris HOM05D006505 ORTHO05D008086 1.5e-41 174.1 167 55.7
Nitab4.5_0002941g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 1.9e-41 173.7 156 58.3
Sed0012178 Sechium edule HOM05D006505 ORTHO05D008086 6.2e-40 168.7 121 66.1
SGA_v2.0_scaffold89G27392 Striga asiatica HOM05D006505 ORTHO05D008086 6.2e-40 168.7 167 56.3
PGR031G3837 Punica granatum HOM05D006505 ORTHO05D008086 1.1e-39 167.9 186 51.6
unitig_0.g2835 Utricularia gibba HOM05D006505 ORTHO05D008086 1.1e-39 167.9 131 64.9
Migut.A00568 Erythranthe guttata HOM05D006505 ORTHO05D008086 4.0e-39 166.0 125 64.0
Cpa.g.sc48.17 Carica papaya HOM05D006505 ORTHO05D008086 1.2e-38 164.5 152 59.2
C05p39630 Brassica napus HOM05D006505 ORTHO05D008086 2.0e-38 163.7 102 77.5
Ah.03g147810 Amaranthus hybridus HOM05D006505 ORTHO05D008086 2.6e-38 163.3 155 52.9
BolC5t32703H Brassica oleracea HOM05D006505 ORTHO05D008086 2.2e-37 160.2 104 76.9
SalBow4G2740 Salvia bowleyana HOM05D006505 ORTHO05D008086 3.7e-37 159.5 138 59.4
Gohir.D08G224600 Gossypium hirsutum HOM05D006505 ORTHO05D008086 4.6e-35 152.5 162 53.7
SGA_v2.0_scaffold96G29075 Striga asiatica HOM05D006505 ORTHO05D008086 1.0e-34 151.4 138 57.2
Gorai.004G238500 Gossypium raimondii HOM05D006505 ORTHO05D008086 2.3e-34 150.2 162 53.1
Gohir.A08G207900 Gossypium hirsutum HOM05D006505 ORTHO05D008086 8.6e-34 148.3 162 51.9
Peaxi162Scf00193g00002 Petunia axillaris HOM05D006505 ORTHO05D008086 2.3e-31 140.2 134 56.0
Potri.007G117700 Populus trichocarpa HOM05D006505 ORTHO05D008086 3.1e-31 139.8 159 50.3
ECA240G0490 Erigeron canadensis HOM05D006505 ORTHO05D008086 7.5e-30 135.2 110 64.5
Nn1g10029 Nelumbo nucifera HOM05D006505 ORTHO05D008086 1.1e-28 131.3 160 45.6
Nn1g10155 Nelumbo nucifera HOM05D006505 ORTHO05D008086 1.1e-28 131.3 160 45.6
BcaC05g27958 Brassica carinata HOM05D004130 ORTHO05D004705 3.2e-28 129.8 76 77.6
Actinidia01261 Actinidia chinensis HOM05D006505 ORTHO05D008086 4.1e-28 129.4 135 54.8
Os03g0385900 Oryza sativa ssp. japonica HOM05D006505 ORTHO05D008086 9.2e-28 128.3 123 53.7
Zm00001eb342930 Zea mays HOM05D006505 ORTHO05D008086 7.8e-27 125.2 121 52.1
GSVIVG01031638001 Vitis vinifera HOM05D006505 ORTHO05D008086 2.3e-26 123.6 93 63.4
Aqoxy1G02002 Aquilegia oxysepala HOM05D006505 ORTHO05D008086 9.5e-25 118.2 123 52.0
Rhsim11G0030300 Rhododendron simsii HOM05D001695 ORTHO05D008931 8.4e-21 105.1 100 55.0
CDE02G2054 Ceratophyllum demersum HOM05D006505 ORTHO05D008086 6.6e-18 95.5 90 52.2
Nn1g10037 Nelumbo nucifera HOM05D006505 ORTHO05D008086 5.6e-17 92.4 93 51.6
Rhsim01G0291600 Rhododendron simsii HOM05D006505 ORTHO05D008086 2.8e-16 90.1 109 47.7
A05p25490 Brassica napus HOM05D006505 ORTHO05D008086 2.9e-13 80.1 46 78.3
Dinv41818 Davidia involucrata HOM05D001955 ORTHO05D001917 1.1e-12 78.2 70 60.0
Actinidia32777 Actinidia chinensis HOM05D006505 ORTHO05D008086 1.9e-12 77.4 65 60.0
TAR636G3390 Trochodendron aralioides HOM05D006505 ORTHO05D008086 5.4e-12 75.9 106 41.5
MBI05_g23315_MAGBIO Magnolia biondii HOM05D006505 ORTHO05D008086 4.6e-11 72.8 69 47.8
Sed0026211 Sechium edule HOM05D006505 ORTHO05D008086 1.7e-10 70.9 101 43.6
AagrBONN_evm.TU.Sc2ySwM_340.30 Anthoceros agrestis HOM05D000964 ORTHO05D003870 1.9e-09 67.4 137 32.8
Cre06.g288400 Chlamydomonas reinhardtii HOM05D000964 ORTHO05D003870 1.3e-08 64.7 121 37.2
PSO648G0043 Papaver somniferum HOM05D006505 ORTHO05D008086 1.3e-08 64.7 74 43.2
PSO339G5687 Papaver somniferum HOM05D006505 ORTHO05D008086 1.6e-08 64.3 74 43.2
CAN.G601.5 Capsicum annuum HOM05D006505 ORTHO05D008086 2.1e-08 63.9 87 47.1
PSO384G0602 Papaver somniferum HOM05D006505 ORTHO05D008086 4.0e-07 59.7 74 40.5
BraA05t21433Z Brassica rapa HOM05D006505 ORTHO05D008086 5.3e-07 59.3 49 63.3
PSO339G1081 Papaver somniferum HOM05D006505 ORTHO05D008086 1.2e-06 58.2 81 39.5
PSO832G3634 Papaver somniferum HOM05D000964 ORTHO05D003870 2.6e-06 57.0 119 37.0
Cfa018462 Carpinus fangiana HOM05D000964 ORTHO05D003870 3.4e-06 56.6 144 34.7


User provided reference genes

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