Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG2G14000 Aethionema arabicum HOM05D001041 ORTHO05D000846 3.1e-30 134.4 65 100.0
Aa31LG2G13950 Aethionema arabicum HOM05D001041 ORTHO05D000846 4.0e-30 134.0 64 100.0
BcaC05g27933 Brassica carinata HOM05D001041 ORTHO05D000846 2.6e-29 131.3 64 96.9
BolC5t32674H Brassica oleracea HOM05D001041 ORTHO05D000846 2.6e-29 131.3 64 96.9
BcaB04g18002 Brassica carinata HOM05D001041 ORTHO05D000846 4.5e-29 130.6 64 96.9
BcaC07g37636 Brassica carinata HOM05D001041 ORTHO05D000846 4.5e-29 130.6 64 96.9
A08p09380 Brassica napus HOM05D001041 ORTHO05D000846 4.5e-29 130.6 64 96.9
A05p25310 Brassica napus HOM05D001041 ORTHO05D000846 7.6e-29 129.8 64 95.3
BraA05t21416Z Brassica rapa HOM05D001041 ORTHO05D000846 7.6e-29 129.8 64 95.3
BolC8t48009H Brassica oleracea HOM05D001041 ORTHO05D000846 9.9e-29 129.4 64 95.3
C05p39380 Brassica napus HOM05D001041 ORTHO05D000846 1.3e-28 129.0 64 95.3
BcaB03g13771 Brassica carinata HOM05D001041 ORTHO05D000846 3.8e-28 127.5 64 93.8
Thhalv10008500m.g Eutrema salsugineum HOM05D001041 ORTHO05D000846 4.9e-28 127.1 64 98.4
Carub.0001s3037 Capsella rubella HOM05D001041 ORTHO05D000846 8.4e-28 126.3 64 93.8
CARHR031400 Cardamine hirsuta HOM05D001041 ORTHO05D000846 5.5e-27 123.6 64 95.3
CARHR129730 Cardamine hirsuta HOM05D001041 ORTHO05D000846 2.1e-26 121.7 64 87.5
Sp1g27710 Schrenkiella parvula HOM05D001041 ORTHO05D000846 6.0e-26 120.2 64 92.2
AT1G32050 Arabidopsis thaliana HOM05D001041 ORTHO05D000846 7.9e-26 119.8 64 92.2
BraA08t32936Z Brassica rapa HOM05D001041 ORTHO05D000846 5.6e-24 113.6 97 63.9
Sp4g17780 Schrenkiella parvula HOM05D001041 ORTHO05D000846 1.3e-23 112.5 67 80.6
THA.LOC104814408 Tarenaya hassleriana HOM05D001041 ORTHO05D000846 3.7e-23 110.9 68 83.8
Thhalv10017084m.g Eutrema salsugineum HOM05D001041 ORTHO05D000846 8.1e-23 109.8 67 79.1
Aa31LG9G15590 Aethionema arabicum HOM05D001041 ORTHO05D000846 2.9e-20 101.3 67 74.6
THA.LOC104812729 Tarenaya hassleriana HOM05D001041 ORTHO05D000846 6.5e-20 100.1 67 76.1
BcaB02g09418 Brassica carinata HOM05D001041 ORTHO05D000846 7.1e-19 96.7 66 72.7
A05p10160 Brassica napus HOM05D001041 ORTHO05D000846 9.3e-19 96.3 66 74.2
C04p12570 Brassica napus HOM05D001041 ORTHO05D000846 9.3e-19 96.3 66 74.2
BolC4t22903H Brassica oleracea HOM05D001041 ORTHO05D000846 9.3e-19 96.3 66 74.2
BraA05t19957Z Brassica rapa HOM05D001041 ORTHO05D000846 9.3e-19 96.3 66 74.2
BcaC02g11670 Brassica carinata HOM05D001041 ORTHO05D000846 1.2e-18 95.9 66 74.2
PGR031G1201 Punica granatum HOM05D001041 ORTHO05D000846 1.8e-17 92.0 69 73.9
Duzib205G1313 Durio zibethinus HOM05D001041 ORTHO05D000846 3.0e-17 91.3 66 71.2
FAN08G0271 Fragaria x ananassa HOM05D001041 ORTHO05D000846 3.9e-17 90.9 64 71.9
FAN18G1131 Fragaria x ananassa HOM05D001041 ORTHO05D000846 3.9e-17 90.9 64 71.9
FAN18G4014 Fragaria x ananassa HOM05D001041 ORTHO05D000846 3.9e-17 90.9 64 71.9
FAN13G1846 Fragaria x ananassa HOM05D001041 ORTHO05D000846 5.1e-17 90.5 64 71.9
RcHm_v2.0_Chr7g0212781 Rosa chinensis HOM05D001041 ORTHO05D000846 6.7e-17 90.1 64 71.9
COL.COLO4_13716 Corchorus olitorius HOM05D001041 ORTHO05D000846 1.1e-16 89.4 66 69.7
FAN04G0813 Fragaria x ananassa HOM05D001041 ORTHO05D000846 1.1e-16 89.4 64 70.3
Gohir.A03G000020 Gossypium hirsutum HOM05D001041 ORTHO05D000846 1.1e-16 89.4 66 68.2
Gohir.D03G177300 Gossypium hirsutum HOM05D001041 ORTHO05D000846 1.1e-16 89.4 66 68.2
Gorai.003G186500 Gossypium raimondii HOM05D001041 ORTHO05D000846 1.1e-16 89.4 66 68.2
Thecc.03G313700 Theobroma cacao HOM05D001041 ORTHO05D000846 1.9e-16 88.6 66 68.2
Eucgr.D02626 Eucalyptus grandis HOM05D001041 ORTHO05D000846 2.5e-16 88.2 69 66.7
Prupe.5G024700 Prunus persica HOM05D001041 ORTHO05D000846 4.3e-16 87.4 71 67.6
CANSAT21G0037 Cannabis sativa HOM05D001041 ORTHO05D000846 1.6e-15 85.5 66 68.2
Phvul.002G133200 Phaseolus vulgaris HOM05D001041 ORTHO05D000846 1.6e-15 85.5 63 66.7
Sed0004208 Sechium edule HOM05D001041 ORTHO05D000846 2.1e-15 85.1 69 66.7
Duzib068G1102 Durio zibethinus HOM05D001041 ORTHO05D000846 2.8e-15 84.7 66 65.2
MD06G1023700 Malus domestica HOM05D001041 ORTHO05D000846 3.7e-15 84.3 71 64.8
MELO3C013812.2 Cucumis melo HOM05D001041 ORTHO05D000846 4.8e-15 84.0 70 65.7
Atru.chr6.1573 Acer truncatum HOM05D001041 ORTHO05D000846 6.3e-15 83.6 67 62.7
AL4G31610 Arabidopsis lyrata HOM05D001041 ORTHO05D000846 8.2e-15 83.2 69 65.2
ClCG10G001190 Citrullus lanatus HOM05D001041 ORTHO05D000846 1.4e-14 82.4 70 64.3
QL12p000270 Quercus lobata HOM05D001041 ORTHO05D000846 1.4e-14 82.4 70 62.9
CsaV3_3G001230 Cucumis sativus L. HOM05D001041 ORTHO05D000846 1.8e-14 82.0 70 64.3
MD00G1068600 Malus domestica HOM05D001041 ORTHO05D000846 1.8e-14 82.0 71 64.8
Psat2g140520 Pisum sativum HOM05D001041 ORTHO05D000846 1.8e-14 82.0 67 64.2
VMungo1215G3286 Vigna mungo HOM05D001041 ORTHO05D000846 1.8e-14 82.0 63 65.1
Cc08_g03950 Coffea canephora HOM05D001041 ORTHO05D000846 3.1e-14 81.3 71 64.8
FvH4_5g23510 Fragaria vesca HOM05D001041 ORTHO05D000846 1.5e-13 79.0 64 64.1
Glyma.09G210800 Glycine max HOM05D001041 ORTHO05D000846 1.5e-13 79.0 70 60.0
CiPaw.11G100800 Carya illinoinensis HOM05D001041 ORTHO05D000846 2.0e-13 78.6 70 60.0
Ciclev10002151m.g Citrus clementina HOM05D001041 ORTHO05D000846 2.6e-13 78.2 70 60.0
Dinv06904 Davidia involucrata HOM05D001041 ORTHO05D000846 4.5e-13 77.4 70 60.0
Lj2g0027040 Lotus japonicus HOM05D001041 ORTHO05D000846 4.5e-13 77.4 69 60.9
SGA_v2.0_scaffold89G27428 Striga asiatica HOM05D001041 ORTHO05D000846 5.9e-13 77.0 68 63.2
Glyma.01G010300 Glycine max HOM05D001041 ORTHO05D000846 1.0e-12 76.3 70 61.4
Medtr5g027790 Medicago truncatula HOM05D001041 ORTHO05D000846 1.3e-12 75.9 68 64.7
Dinv29026 Davidia involucrata HOM05D001041 ORTHO05D000846 3.8e-12 74.3 70 58.6
Oeu001192.1 Olea europaea HOM05D001041 ORTHO05D000846 3.8e-12 74.3 70 58.6
Cfa012549 Carpinus fangiana HOM05D001041 ORTHO05D000846 6.5e-12 73.6 69 58.0
CiPaw.12G069900 Carya illinoinensis HOM05D001041 ORTHO05D000846 6.5e-12 73.6 67 59.7
Actinidia01337 Actinidia chinensis HOM05D003770 ORTHO05D000846 8.4e-12 73.2 70 57.1
arahy.Tifrunner.gnm1.ann1.199BN4 Arachis hypogaea HOM05D001041 ORTHO05D000846 8.4e-12 73.2 70 58.6
arahy.Tifrunner.gnm1.ann1.IZA4PH Arachis hypogaea HOM05D001041 ORTHO05D000846 8.4e-12 73.2 70 58.6
Migut.A00587 Erythranthe guttata HOM05D001041 ORTHO05D000846 8.4e-12 73.2 66 59.1
CAN.G773.21 Capsicum annuum HOM05D001041 ORTHO05D000846 1.4e-11 72.4 66 60.6
ATR0829G055 Amborella trichopoda HOM05D001041 ORTHO05D000846 1.9e-11 72.0 69 58.0
Cpa.g.c26180 Carica papaya HOM05D001041 ORTHO05D000846 1.9e-11 72.0 66 62.1
Lalb_Chr05g0215621 Lupinus albus HOM05D001041 ORTHO05D000846 1.9e-11 72.0 71 59.2
Hma1.2p1_1486F.1_g286530 Hydrangea macrophylla HOM05D001041 ORTHO05D000846 3.2e-11 71.2 70 55.7
Actinidia27274 Actinidia chinensis HOM05D001041 ORTHO05D000846 4.2e-11 70.9 70 55.7
Lj8C318T18 Lonicera japonica HOM05D001041 ORTHO05D000846 4.2e-11 70.9 71 54.9
Nitab4.5_0001770g0160 Nicotiana tabacum HOM05D001041 ORTHO05D000846 4.2e-11 70.9 70 55.7
Nitab4.5_0003152g0040 Nicotiana tabacum HOM05D001041 ORTHO05D000846 4.2e-11 70.9 70 54.3
Sopen08g024850 Solanum pennellii HOM05D001041 ORTHO05D000846 5.5e-11 70.5 68 57.4
GSVIVG01012985001 Vitis vinifera HOM05D001041 ORTHO05D000846 7.2e-11 70.1 70 58.6
Lsat_1_v5_gn_6_17720 Lactuca sativa HOM05D001041 ORTHO05D000846 9.3e-11 69.7 72 52.8
TAR629G1823 Trochodendron aralioides HOM05D001041 ORTHO05D000846 9.3e-11 69.7 68 58.8
CSS0035458 Camellia sinensis var. sinensis HOM05D001041 ORTHO05D000846 1.6e-10 68.9 68 54.4
Lalb_Chr09g0325331 Lupinus albus HOM05D001041 ORTHO05D000846 2.1e-10 68.6 71 54.9
MSTRG.25704 Avicennia marina HOM05D001041 ORTHO05D000846 2.7e-10 68.2 66 56.1
Lsat_1_v5_gn_3_21001 Lactuca sativa HOM05D001041 ORTHO05D000846 2.7e-10 68.2 73 52.1
CSS0005416 Camellia sinensis var. sinensis HOM05D001041 ORTHO05D000846 3.5e-10 67.8 70 52.9
CSS0020658 Camellia sinensis var. sinensis HOM05D001041 ORTHO05D000846 3.5e-10 67.8 70 52.9
Sabra01G0103700 Salix brachista HOM05D001041 ORTHO05D000846 3.5e-10 67.8 65 60.0
TWI81G0129 Tripterygium wilfordii HOM05D001041 ORTHO05D000846 4.6e-10 67.4 70 57.1
Potri.001G134100 Populus trichocarpa HOM05D001041 ORTHO05D000846 1.8e-09 65.5 66 59.1
Manes.15G184900 Manihot esculenta HOM05D001041 ORTHO05D000846 2.3e-09 65.1 67 56.7
Nn1g01913 Nelumbo nucifera HOM05D001041 ORTHO05D000846 2.3e-09 65.1 71 52.1
Aqoxy3G02120 Aquilegia oxysepala HOM05D001041 ORTHO05D000846 3.0e-09 64.7 69 53.6
CDE04G2746 Ceratophyllum demersum HOM05D001041 ORTHO05D000846 6.7e-09 63.5 67 49.3
Potri.003G099300 Populus trichocarpa HOM05D001041 ORTHO05D000846 6.7e-09 63.5 71 56.3
PSO063G3742 Papaver somniferum HOM05D001041 ORTHO05D000846 8.7e-09 63.2 71 50.7
Zm00001eb251510 Zea mays HOM05D001041 ORTHO05D000846 8.7e-09 63.2 71 52.1
ECA233G4912 Erigeron canadensis HOM05D001041 ORTHO05D000846 1.5e-08 62.4 71 49.3
MBI04_g36020_MAGBIO Magnolia biondii HOM05D001041 ORTHO05D000846 1.5e-08 62.4 69 50.7
Sabra03G0067400 Salix brachista HOM05D001041 ORTHO05D000846 3.3e-08 61.2 67 52.2
Sc22g0001930 Simmondsia chinensis HOM05D001041 ORTHO05D000846 5.7e-08 60.5 65 49.2
AL212U10010 Arabidopsis lyrata HOM05D001041 ORTHO05D000846 1.6e-07 58.9 74 50.0
Peaxi162Scf00879g00020 Petunia axillaris HOM05D001041 ORTHO05D000846 4.8e-07 57.4 71 46.5
Sed0014078 Sechium edule HOM05D001041 ORTHO05D000846 1.8e-06 55.5 67 46.3
Zm00001eb430100 Zea mays HOM05D001041 ORTHO05D000846 1.8e-06 55.5 68 51.5
THA.LOC104819079 Tarenaya hassleriana HOM05D001041 ORTHO05D000846 3.1e-06 54.7 65 49.2
Os04g0597000 Oryza sativa ssp. japonica HOM05D001041 ORTHO05D000846 4.1e-06 54.3 71 46.5


User provided reference genes

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