Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG2G11760 Aethionema arabicum HOM05D009880 ORTHO05D004072 2.0e-258 895.2 443 100.0
Aa31LG2G11790 Aethionema arabicum HOM05D009880 ORTHO05D004072 3.0e-185 652.1 441 77.8
CARHR284540 Cardamine hirsuta HOM05D009880 ORTHO05D004072 2.2e-111 406.8 454 50.9
Aa31LG2G11730 Aethionema arabicum HOM05D009880 ORTHO05D004072 2.1e-101 373.6 332 62.7
AL1G65420 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 1.6e-90 337.4 447 47.2
Carub.0002s0844 Capsella rubella HOM05D009880 ORTHO05D004072 2.9e-87 326.6 446 46.0
AT1G54930 Arabidopsis thaliana HOM05D009880 ORTHO05D004072 8.7e-84 315.1 440 45.0
C09p24280 Brassica napus HOM05D009880 ORTHO05D004072 9.6e-75 285.0 435 43.4
BolC9t55345H Brassica oleracea HOM05D009880 ORTHO05D004072 9.6e-75 285.0 435 43.4
A09p19280 Brassica napus HOM05D009880 ORTHO05D004072 2.4e-73 280.4 434 41.9
BraA09t37545Z Brassica rapa HOM05D009880 ORTHO05D004072 1.5e-72 277.7 444 42.8
BcaC04g22033 Brassica carinata HOM05D009880 ORTHO05D004072 2.0e-72 277.3 435 43.0
Thhalv10013728m.g Eutrema salsugineum HOM05D009880 ORTHO05D004072 3.4e-72 276.6 443 40.0
BcaB07g31107 Brassica carinata HOM05D009880 ORTHO05D004072 8.4e-71 271.9 451 42.8
Sp6g30080 Schrenkiella parvula HOM05D009880 ORTHO05D004072 5.1e-68 262.7 440 38.9
Carub.0006s1211 Capsella rubella HOM05D009880 ORTHO05D004072 5.7e-67 259.2 445 38.2
CARHR199510 Cardamine hirsuta HOM05D009880 ORTHO05D004072 1.2e-64 251.5 441 38.1
AT5G13920 Arabidopsis thaliana HOM05D009880 ORTHO05D004072 2.6e-64 250.4 465 35.9
THA.LOC104823128 Tarenaya hassleriana HOM05D009880 ORTHO05D004072 5.9e-64 249.2 471 37.6
AL6G24570 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 8.5e-63 245.4 446 36.8
BcaB01g05328 Brassica carinata HOM05D009880 ORTHO05D004072 1.4e-54 218.0 440 34.5
C03p07260 Brassica napus HOM05D009880 ORTHO05D004072 2.1e-53 214.2 440 34.3
A03p06280 Brassica napus HOM05D009880 ORTHO05D004072 2.7e-53 213.8 442 35.1
BraA03t09959Z Brassica rapa HOM05D009880 ORTHO05D004072 6.1e-53 212.6 442 34.8
Manes.04G094400 Manihot esculenta HOM05D007742 ORTHO05D004072 2.6e-40 170.6 530 29.2
Potri.009G112676 Populus trichocarpa HOM05D007742 ORTHO05D004072 2.9e-39 167.2 503 29.8
Potri.T125604 Populus trichocarpa HOM05D007742 ORTHO05D004072 3.2e-38 163.7 508 29.3
Atru.chr6.2712 Acer truncatum HOM05D007742 ORTHO05D004072 1.6e-37 161.4 553 27.3
Sabra09G0086100 Salix brachista HOM05D007742 ORTHO05D004072 8.0e-37 159.1 494 28.5
QL02p068827 Quercus lobata HOM05D007742 ORTHO05D004072 2.3e-36 157.5 594 27.3
Sabra09G0086000 Salix brachista HOM05D007742 ORTHO05D004072 2.3e-36 157.5 514 29.0
QL02p069032 Quercus lobata HOM05D007742 ORTHO05D004072 2.8e-34 150.6 581 26.3
Ciclev10014656m.g Citrus clementina HOM05D007742 ORTHO05D004072 3.1e-33 147.1 588 25.9
CiPaw.15G155500 Carya illinoinensis HOM05D007742 ORTHO05D004072 7.0e-33 146.0 149 51.7
Potri.T125504 Populus trichocarpa HOM05D007742 ORTHO05D004072 1.2e-32 145.2 190 42.1
Cfa007153 Carpinus fangiana HOM05D007742 ORTHO05D004072 7.7e-32 142.5 612 25.0
Ciclev10014788m.g Citrus clementina HOM05D007742 ORTHO05D004072 8.5e-31 139.0 182 38.5
BolC3t13228H Brassica oleracea HOM05D009880 ORTHO05D004072 3.2e-30 137.1 374 31.0
Prupe.3G314400 Prunus persica HOM05D007742 ORTHO05D004072 2.7e-29 134.0 627 25.5
Haze_14967 Corylus avellana HOM05D007742 ORTHO05D004072 4.7e-29 133.3 604 25.5
Nn4g22099 Nelumbo nucifera HOM05D007742 ORTHO05D004072 1.8e-28 131.3 163 43.6
TAR374G0633 Trochodendron aralioides HOM05D007742 ORTHO05D004072 2.0e-27 127.9 142 40.8
Dinv33270 Davidia involucrata HOM05D007742 ORTHO05D004072 8.3e-26 122.5 614 22.6
Actinidia37712 Actinidia chinensis HOM05D007742 ORTHO05D004072 1.4e-25 121.7 190 35.8
Sc16g0003130 Simmondsia chinensis HOM05D007742 ORTHO05D004072 2.4e-25 120.9 433 25.9
HPP92_017732 Vanilla planifolia HOM05D008124 ORTHO05D004072 7.0e-25 119.4 157 40.1
PSO170G3234 Papaver somniferum HOM05D007742 ORTHO05D004072 3.5e-24 117.1 145 42.8
Lj1g0006134 Lotus japonicus HOM05D007742 ORTHO05D004072 4.5e-24 116.7 151 41.1
Lj1g0016784 Lotus japonicus HOM05D007742 ORTHO05D001134 5.9e-24 116.3 149 41.6
PGR142G3827 Punica granatum HOM05D007742 ORTHO05D004072 7.7e-24 115.9 258 29.8
Lj2g0008812 Lotus japonicus HOM05D007742 ORTHO05D004072 1.0e-23 115.5 149 41.6
PSO357G0543 Papaver somniferum HOM05D007742 ORTHO05D004072 1.3e-23 115.2 145 42.8
PGSC0003DMG400027518 Solanum tuberosum HOM05D008124 ORTHO05D004072 1.3e-23 115.2 146 40.4
CAN.G134.65 Capsicum annuum HOM05D008124 ORTHO05D004072 1.7e-23 114.8 142 38.7
PSO541G0277 Papaver somniferum HOM05D008124 ORTHO05D004072 1.7e-23 114.8 152 38.2
Zm00001eb059980 Zea mays HOM05D008124 ORTHO05D004072 1.7e-23 114.8 168 34.5
Sed0023600 Sechium edule HOM05D008124 ORTHO05D004072 6.6e-23 112.8 137 40.1
Sopen01g040750 Solanum pennellii HOM05D008124 ORTHO05D004072 1.5e-22 111.7 144 40.3
QL02p069084 Quercus lobata HOM05D007742 ORTHO05D004072 1.9e-22 111.3 422 25.1
Cfa000684 Carpinus fangiana HOM05D008124 ORTHO05D004072 2.5e-22 110.9 146 38.4
ClCG07G010840 Citrullus lanatus HOM05D008124 ORTHO05D004072 5.6e-22 109.8 147 37.4
MD17G1125500 Malus domestica HOM05D008124 ORTHO05D004072 7.2e-22 109.4 159 37.1
Prupe.3G190200 Prunus persica HOM05D008124 ORTHO05D004072 7.2e-22 109.4 159 36.5
Rhsim07G0073400 Rhododendron simsii HOM05D008124 ORTHO05D004072 7.2e-22 109.4 147 37.4
TAR627G0754 Trochodendron aralioides HOM05D008124 ORTHO05D004072 7.2e-22 109.4 145 38.6
Ah.03g136430 Amaranthus hybridus HOM05D007742 ORTHO05D004072 9.5e-22 109.0 141 39.0
Os03g0786500 Oryza sativa ssp. japonica HOM05D008124 ORTHO05D004072 9.5e-22 109.0 163 32.5
CSS0026315 Camellia sinensis var. sinensis HOM05D007742 ORTHO05D004072 1.2e-21 108.6 149 40.3
VMungo1383G1777 Vigna mungo HOM05D007742 ORTHO05D004072 1.2e-21 108.6 146 37.7
CsaV3_4G007470 Cucumis sativus L. HOM05D008124 ORTHO05D004072 2.1e-21 107.8 130 41.5
Nn4g26556 Nelumbo nucifera HOM05D008124 ORTHO05D004072 2.1e-21 107.8 155 36.1
Eucgr.K01332 Eucalyptus grandis HOM05D008124 ORTHO05D004072 3.6e-21 107.1 142 37.3
VMungo0464G0864 Vigna mungo HOM05D007742 ORTHO05D004072 3.6e-21 107.1 142 41.5
Duzib138G0881 Durio zibethinus HOM05D007742 ORTHO05D004072 3.0e-20 104.0 197 34.5
CANSAT64G0620 Cannabis sativa HOM05D008124 ORTHO05D004072 6.8e-20 102.8 155 37.4
Nitab4.5_0005905g0010 Nicotiana tabacum HOM05D008124 ORTHO05D004072 6.8e-20 102.8 131 38.2
TPR.G26439 Trifolium pratense HOM05D007742 ORTHO05D004072 8.9e-20 102.4 137 40.1
Nitab4.5_0002247g0100 Nicotiana tabacum HOM05D008124 ORTHO05D004072 1.2e-19 102.1 131 38.9
FAN14G4038 Fragaria x ananassa HOM05D000027 ORTHO05D004072 2.0e-19 101.3 163 33.7
Phvul.001G079300 Phaseolus vulgaris HOM05D007742 ORTHO05D004072 2.0e-19 101.3 146 38.4
GSVIVG01018616001 Vitis vinifera HOM05D008124 ORTHO05D004072 4.4e-19 100.1 126 41.3
Sabra09G0085900 Salix brachista HOM05D007742 ORTHO05D004072 7.5e-19 99.4 437 26.3
Glyma.19G105500 Glycine max HOM05D007742 ORTHO05D004072 1.3e-18 98.6 140 35.7
Cc07_g01390 Coffea canephora HOM05D007742 ORTHO05D004072 2.2e-18 97.8 107 43.9
Cc07_g01400 Coffea canephora HOM05D007742 ORTHO05D004072 2.2e-18 97.8 107 43.9
FvH4_6g39844 Fragaria vesca HOM05D008124 ORTHO05D004072 2.9e-18 97.4 174 31.6
AT3G42860 Arabidopsis thaliana HOM05D008124 ORTHO05D004072 3.7e-18 97.1 122 40.2
C09p47180 Brassica napus HOM05D008124 ORTHO05D004072 4.9e-18 96.7 120 40.0
BolC9t57572H Brassica oleracea HOM05D008124 ORTHO05D004072 4.9e-18 96.7 120 40.0
Carub.0005s0890 Capsella rubella HOM05D008124 ORTHO05D004072 4.9e-18 96.7 109 44.0
AL5G21140 Arabidopsis lyrata HOM05D008124 ORTHO05D004072 6.4e-18 96.3 121 39.7
A10p13280 Brassica napus HOM05D008124 ORTHO05D004072 6.4e-18 96.3 140 35.7
BraA10t43425Z Brassica rapa HOM05D008124 ORTHO05D004072 6.4e-18 96.3 140 35.7
CARHR152360 Cardamine hirsuta HOM05D008124 ORTHO05D004072 8.3e-18 95.9 112 41.1
Haze_06124 Corylus avellana HOM05D008124 ORTHO05D004072 8.3e-18 95.9 142 35.9
Thhalv10013799m.g Eutrema salsugineum HOM05D008124 ORTHO05D004072 1.1e-17 95.5 113 40.7
SGA_v2.0_scaffold305G47989 Striga asiatica HOM05D007742 ORTHO05D004072 1.4e-17 95.1 177 33.3
RcHm_v2.0_Chr2g0154211 Rosa chinensis HOM05D008124 ORTHO05D004072 1.8e-17 94.7 169 30.8
Sp6g17920 Schrenkiella parvula HOM05D008124 ORTHO05D004072 1.8e-17 94.7 113 39.8
Dinv20269 Davidia involucrata HOM05D008124 ORTHO05D004072 5.4e-17 93.2 127 40.9
Manes.09G074700 Manihot esculenta HOM05D008124 ORTHO05D004072 7.0e-17 92.8 144 35.4
THA.LOC104810998 Tarenaya hassleriana HOM05D008124 ORTHO05D004072 9.2e-17 92.4 120 38.3
Psat3g092040 Pisum sativum HOM05D007742 ORTHO05D004072 1.2e-16 92.0 134 38.1
Mapoly0141s0028 Marchantia polymorpha HOM05D008124 ORTHO05D004072 1.6e-16 91.7 148 33.8
Glyma.19G105400 Glycine max HOM05D007742 ORTHO05D004072 2.0e-16 91.3 147 35.4
PGR004G0249 Punica granatum HOM05D008124 ORTHO05D004072 2.7e-16 90.9 137 35.8
MBI02_g36352_MAGBIO Magnolia biondii HOM05D008124 ORTHO05D004072 4.6e-16 90.1 161 32.3
Solyc01g097070.4 Solanum lycopersicum HOM05D008124 ORTHO05D004072 4.6e-16 90.1 130 37.7
Ca_08225_v3 Cicer arietinum L. HOM05D007742 ORTHO05D004072 7.8e-16 89.4 472 25.2
Gohir.A07G082400 Gossypium hirsutum HOM05D018961 ORTHO05D004072 1.0e-15 89.0 162 35.8
Gorai.001G095300 Gossypium raimondii HOM05D018961 ORTHO05D004072 1.7e-15 88.2 164 35.4
HPP92_017701 Vanilla planifolia HOM05D008124 ORTHO05D004072 1.7e-15 88.2 91 44.0
arahy.Tifrunner.gnm1.ann1.H02ZFL Arachis hypogaea HOM05D007742 ORTHO05D004072 3.0e-15 87.4 147 34.7
CDE02G3354 Ceratophyllum demersum HOM05D008124 ORTHO05D004072 3.9e-15 87.0 125 35.2
FAN02G4088 Fragaria x ananassa HOM05D008124 ORTHO05D004072 6.6e-15 86.3 114 37.7
Sabra16G0201300 Salix brachista HOM05D008124 ORTHO05D004072 6.6e-15 86.3 114 37.7
Gohir.D07G088900 Gossypium hirsutum HOM05D018961 ORTHO05D004072 8.6e-15 85.9 164 34.8
TWI60G0051 Tripterygium wilfordii HOM05D008124 ORTHO05D004072 3.3e-14 84.0 107 37.4
Migut.A00628 Erythranthe guttata HOM05D007742 ORTHO05D004072 5.6e-14 83.2 502 24.1
Potri.001G318100 Populus trichocarpa HOM05D008124 ORTHO05D004072 5.6e-14 83.2 118 37.3
MSTRG.25687 Avicennia marina HOM05D007742 ORTHO05D004072 7.3e-14 82.8 402 24.9
Aa31LG4G13260 Aethionema arabicum HOM05D008124 ORTHO05D004072 1.2e-13 82.0 152 32.2
EL10Ac9g22884 Beta vulgaris HOM05D008124 ORTHO05D004072 1.6e-13 81.6 82 45.1
CDE06G0867 Ceratophyllum demersum HOM05D007742 ORTHO05D004072 1.6e-13 81.6 101 40.6
AUR62037803 Chenopodium quinoa HOM05D007742 ORTHO05D004072 2.1e-13 81.3 174 31.0
DCAR_008617 Daucus carota HOM05D007742 ORTHO05D004072 2.1e-13 81.3 189 29.1
CSS0000950 Camellia sinensis var. sinensis HOM05D007742 ORTHO05D004072 2.8e-13 80.9 132 34.8
Peaxi162Scf00647g00014 Petunia axillaris HOM05D008124 ORTHO05D004072 1.4e-12 78.6 102 39.2
QL09p009056 Quercus lobata HOM05D004225 ORTHO05D004728 3.1e-12 77.4 110 40.0
Rhsim08G0038200 Rhododendron simsii HOM05D000001 ORTHO05D000003 3.4e-11 73.9 123 32.5
AUR62017629 Chenopodium quinoa HOM05D008124 ORTHO05D004072 7.5e-11 72.8 82 45.1
Hma1.2p1_0868F.1_g230420 Hydrangea macrophylla HOM05D007742 ORTHO05D004072 7.5e-11 72.8 103 39.8
AagrBONN_evm.TU.Sc2ySwM_228.5614 Anthoceros agrestis HOM05D008124 ORTHO05D004072 9.8e-11 72.4 97 40.2
arahy.Tifrunner.gnm1.ann1.T3P4RE Arachis hypogaea HOM05D007742 ORTHO05D004072 6.4e-10 69.7 469 23.7
arahy.Tifrunner.gnm1.ann1.U642C8 Arachis hypogaea HOM05D007742 ORTHO05D004072 8.3e-10 69.3 469 23.2
Sed0004202 Sechium edule HOM05D008124 ORTHO05D004072 8.3e-10 69.3 49 55.1
AUR62015176 Chenopodium quinoa HOM05D008124 ORTHO05D004072 1.1e-09 68.9 83 41.0
Ah.01g013150 Amaranthus hybridus HOM05D008124 ORTHO05D004072 4.1e-09 67.0 96 36.5
QL02p069122 Quercus lobata HOM05D007742 ORTHO05D004072 2.7e-08 64.3 118 33.9
CSS0006654 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 6.0e-08 63.2 62 46.8
CSS0017436 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 6.0e-08 63.2 62 46.8
GSVIVG01032966001 Vitis vinifera HOM05D007742 ORTHO05D004072 7.8e-08 62.8 115 33.0
ATR0582G234 Amborella trichopoda HOM05D007742 ORTHO05D004072 6.6e-07 59.7 97 35.1
Duzib116G0777 Durio zibethinus HOM05D008124 ORTHO05D004072 1.1e-06 58.9 82 39.0
Aqoxy5G03036 Aquilegia oxysepala HOM05D007742 ORTHO05D004072 1.9e-06 58.2 50 44.0
Dinv12439 Davidia involucrata HOM05D007742 ORTHO05D004072 2.5e-06 57.8 54 44.4
Pp3c21_9710 Physcomitrium patens HOM05D002182 ORTHO05D004671 2.5e-06 57.8 90 33.3
CsaV3_3G039390 Cucumis sativus L. HOM05D002182 ORTHO05D004671 3.3e-06 57.4 116 31.0
MELO3C009682.2 Cucumis melo HOM05D002182 ORTHO05D004671 5.6e-06 56.6 76 36.8


User provided reference genes

Program Settings