Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG1G5090 Aethionema arabicum HOM05D000974 ORTHO05D006000 7.7e-312 1072.8 560 100.0
BcaB03g13541 Brassica carinata HOM05D000974 ORTHO05D006000 1.5e-242 842.8 562 79.2
AL1G20430 Arabidopsis lyrata HOM05D000974 ORTHO05D006000 2.4e-240 835.5 557 77.9
Carub.0001s0921 Capsella rubella HOM05D000974 ORTHO05D006000 6.0e-239 830.9 552 78.8
Sp1g08460 Schrenkiella parvula HOM05D000974 ORTHO05D006000 2.3e-238 828.9 561 77.7
BcaC07g38528 Brassica carinata HOM05D000974 ORTHO05D006000 8.6e-238 827.0 561 77.2
A08p34320 Brassica napus HOM05D000974 ORTHO05D006000 8.6e-238 827.0 564 77.0
BraA06t23866Z Brassica rapa HOM05D000974 ORTHO05D006000 2.8e-236 822.0 561 77.7
BolC8t48951H Brassica oleracea HOM05D000974 ORTHO05D006000 3.7e-233 811.6 564 75.9
BcaC05g24841 Brassica carinata HOM05D000974 ORTHO05D006000 8.3e-233 810.4 562 77.0
AT1G09830 Arabidopsis thaliana HOM05D000974 ORTHO05D006000 1.1e-232 810.1 561 76.3
BraA08t35343Z Brassica rapa HOM05D000974 ORTHO05D006000 5.4e-232 807.7 563 75.8
CARHR009850 Cardamine hirsuta HOM05D000974 ORTHO05D006000 5.4e-232 807.7 558 76.2
C05p07940 Brassica napus HOM05D000974 ORTHO05D006000 4.6e-231 804.7 562 76.5
A06p06550 Brassica napus HOM05D000974 ORTHO05D006000 2.9e-225 785.4 465 85.4
Thhalv10007333m.g Eutrema salsugineum HOM05D000974 ORTHO05D006000 6.4e-225 784.3 558 73.8
BolC5t29546H Brassica oleracea HOM05D000974 ORTHO05D006000 6.0e-223 777.7 563 74.6
THA.LOC104816783 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 7.8e-223 777.3 561 74.2
THA.LOC104816816 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 2.3e-222 775.8 515 77.1
Thecc.02G017200 Theobroma cacao HOM05D000974 ORTHO05D006000 4.3e-213 745.0 556 70.9
COL.COLO4_17713 Corchorus olitorius HOM05D000974 ORTHO05D006000 5.6e-213 744.6 557 70.2
Duzib132G0946 Durio zibethinus HOM05D000974 ORTHO05D006000 8.1e-212 740.7 557 70.2
Manes.07G025100 Manihot esculenta HOM05D000974 ORTHO05D006000 1.8e-211 739.6 489 76.1
Potri.004G225500 Populus trichocarpa HOM05D000974 ORTHO05D006000 4.0e-211 738.4 544 70.4
Cpa.g.sc113.32 Carica papaya HOM05D000974 ORTHO05D006000 6.9e-211 737.6 565 70.1
Ciclev10000877m.g Citrus clementina HOM05D000974 ORTHO05D006000 6.9e-211 737.6 560 70.0
CSS0025059 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 4.5e-210 734.9 501 74.1
Ca_04891_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 9.9e-210 733.8 557 68.0
Duzib052G0127 Durio zibethinus HOM05D000974 ORTHO05D006000 4.9e-209 731.5 548 70.1
Rhsim07G0227600 Rhododendron simsii HOM05D000974 ORTHO05D006000 4.9e-209 731.5 470 78.1
Rhsim07G0227800 Rhododendron simsii HOM05D000974 ORTHO05D006000 4.9e-209 731.5 470 77.9
CSS0010237 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 1.9e-208 729.6 468 77.6
Dinv29601 Davidia involucrata HOM05D000974 ORTHO05D006000 1.9e-208 729.6 532 71.1
Sabra01G0171200 Salix brachista HOM05D000974 ORTHO05D006000 2.4e-208 729.2 486 74.9
TAR381G1040 Trochodendron aralioides HOM05D000974 ORTHO05D006000 2.4e-208 729.2 485 75.7
GSVIVG01038784001 Vitis vinifera HOM05D000974 ORTHO05D006000 3.2e-208 728.8 475 77.1
Atru.chr9.317 Acer truncatum HOM05D000974 ORTHO05D006000 4.2e-208 728.4 567 69.1
Psat2g146560 Pisum sativum HOM05D000974 ORTHO05D006000 4.2e-208 728.4 480 75.4
vmacro01708 Vaccinium macrocarpon HOM05D000974 ORTHO05D006000 3.5e-207 725.3 486 74.3
Atru.chr1.4075 Acer truncatum HOM05D000974 ORTHO05D006000 7.9e-207 724.2 567 68.8
MELO3C016483.2 Cucumis melo HOM05D000974 ORTHO05D006000 1.8e-206 723.0 536 69.6
Dinv19422 Davidia involucrata HOM05D000974 ORTHO05D006000 1.8e-206 723.0 467 76.9
CsaV3_3G006560 Cucumis sativus L. HOM05D000974 ORTHO05D006000 3.0e-206 722.2 538 69.7
Gohir.D12G043400 Gossypium hirsutum HOM05D000974 ORTHO05D006000 1.5e-205 719.9 538 70.4
Gorai.008G045600 Gossypium raimondii HOM05D000974 ORTHO05D006000 3.3e-205 718.8 537 70.8
Lj5C267T12 Lonicera japonica HOM05D000974 ORTHO05D006000 5.6e-205 718.0 551 68.2
Sed0019412 Sechium edule HOM05D000974 ORTHO05D006000 7.4e-205 717.6 564 68.1
ClCG10G007320 Citrullus lanatus HOM05D000974 ORTHO05D006000 9.6e-205 717.2 566 68.4
Peaxi162Scf00011g01426 Petunia axillaris HOM05D000974 ORTHO05D006000 9.6e-205 717.2 466 76.2
Nn5g27502 Nelumbo nucifera HOM05D000974 ORTHO05D006000 4.8e-204 714.9 550 67.3
Medtr5g025310 Medicago truncatula HOM05D000974 ORTHO05D006000 1.1e-203 713.8 553 67.3
Glyma.10G156900 Glycine max HOM05D000974 ORTHO05D006000 1.4e-203 713.4 559 68.0
PGSC0003DMG400024886 Solanum tuberosum HOM05D000974 ORTHO05D006000 1.4e-203 713.4 466 75.3
Nitab4.5_0002347g0020 Nicotiana tabacum HOM05D000974 ORTHO05D006000 2.4e-203 712.6 466 75.8
DCAR_006665 Daucus carota HOM05D000974 ORTHO05D006000 3.1e-203 712.2 466 77.0
QL02p100861 Quercus lobata HOM05D000974 ORTHO05D006000 6.9e-203 711.1 499 72.5
Cc02_g23270 Coffea canephora HOM05D000974 ORTHO05D006000 1.2e-202 710.3 496 72.6
Ca_12589_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 1.5e-202 709.9 555 67.6
Solyc01g103440.3 Solanum lycopersicum HOM05D000974 ORTHO05D006000 1.5e-202 709.9 529 69.4
Sopen01g045790 Solanum pennellii HOM05D000974 ORTHO05D006000 2.0e-202 709.5 466 75.3
Phvul.007G182100 Phaseolus vulgaris HOM05D000974 ORTHO05D006000 3.4e-202 708.8 561 67.6
Gohir.A01G185000 Gossypium hirsutum HOM05D000974 ORTHO05D006000 7.6e-202 707.6 494 73.3
PGR142G3566 Punica granatum HOM05D000974 ORTHO05D006000 9.9e-202 707.2 560 66.8
CANSAT54G1032 Cannabis sativa HOM05D000974 ORTHO05D006000 1.3e-201 706.8 522 70.9
Rhsim11G0122100 Rhododendron simsii HOM05D000974 ORTHO05D006000 1.7e-201 706.4 465 76.1
TWI15G1214 Tripterygium wilfordii HOM05D000974 ORTHO05D006000 1.7e-201 706.4 552 67.8
TPR.G5252 Trifolium pratense HOM05D000974 ORTHO05D006000 3.8e-201 705.3 485 73.0
VMungo0720G1793 Vigna mungo HOM05D000974 ORTHO05D006000 4.9e-201 704.9 556 66.9
CAN.G855.13 Capsicum annuum HOM05D000974 ORTHO05D006000 8.4e-201 704.1 473 73.8
MSTRG.5204 Avicennia marina HOM05D000974 ORTHO05D006000 2.4e-200 702.6 496 71.8
MBI06_g06706_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D006000 2.4e-200 702.6 500 71.4
Lsat_1_v5_gn_7_76800 Lactuca sativa HOM05D000974 ORTHO05D006000 3.5e-199 698.7 496 72.4
Gorai.002G218200 Gossypium raimondii HOM05D000974 ORTHO05D006000 7.9e-199 697.6 494 72.7
FAN03G2436 Fragaria x ananassa HOM05D000974 ORTHO05D006000 1.0e-198 697.2 525 69.1
Sc17g0003920 Simmondsia chinensis HOM05D000974 ORTHO05D006000 1.0e-198 697.2 461 75.9
Ah.08g220180 Amaranthus hybridus HOM05D000974 ORTHO05D006000 3.9e-198 695.3 464 75.2
EL10Ac7g16076 Beta vulgaris HOM05D000974 ORTHO05D006000 3.9e-198 695.3 519 69.2
Lj5g0022297 Lotus japonicus HOM05D000974 ORTHO05D006000 3.9e-198 695.3 450 76.2
ECA236G4964 Erigeron canadensis HOM05D000974 ORTHO05D006000 1.1e-197 693.7 511 70.5
FAN10G1818 Fragaria x ananassa HOM05D000974 ORTHO05D006000 1.5e-197 693.3 525 69.1
CiPaw.06G174600 Carya illinoinensis HOM05D000974 ORTHO05D006000 2.5e-197 692.6 534 68.5
HanXRQChr11g0329691 Helianthus annuus HOM05D000974 ORTHO05D006000 2.5e-197 692.6 495 71.1
Cfa004480 Carpinus fangiana HOM05D000974 ORTHO05D006000 5.6e-197 691.4 546 67.4
MD08G1243400 Malus domestica HOM05D000974 ORTHO05D006000 5.6e-197 691.4 442 77.4
AUR62020045 Chenopodium quinoa HOM05D000974 ORTHO05D006000 9.6e-197 690.6 461 74.8
Nitab4.5_0003816g0050 Nicotiana tabacum HOM05D000974 ORTHO05D006000 9.6e-197 690.6 466 74.2
HanXRQChr06g0176431 Helianthus annuus HOM05D000974 ORTHO05D006000 1.6e-196 689.9 467 73.9
Haze_10037 Corylus avellana HOM05D000974 ORTHO05D006000 2.8e-196 689.1 546 67.4
Prupe.1G580800 Prunus persica HOM05D000974 ORTHO05D006000 4.8e-196 688.3 442 77.1
Hund18885 Selenicereus undatus HOM05D000974 ORTHO05D006000 3.1e-195 685.6 552 66.1
AUR62001730 Chenopodium quinoa HOM05D000974 ORTHO05D006000 4.0e-195 685.3 461 74.4
Os08g0191200 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 4.0e-195 685.3 464 72.2
ATR0598G043 Amborella trichopoda HOM05D000974 ORTHO05D006000 6.9e-195 684.5 461 72.5
HPP92_001871 Vanilla planifolia HOM05D000974 ORTHO05D006000 1.5e-194 683.3 454 74.4
Lalb_Chr21g0311651 Lupinus albus HOM05D000974 ORTHO05D006000 2.0e-194 682.9 450 74.9
MD15G1437700 Malus domestica HOM05D000974 ORTHO05D006000 1.7e-193 679.9 601 62.4
arahy.Tifrunner.gnm1.ann1.0Q8MRK Arachis hypogaea HOM05D000974 ORTHO05D006000 4.9e-193 678.3 553 64.4
arahy.Tifrunner.gnm1.ann1.DWF5LU Arachis hypogaea HOM05D000974 ORTHO05D006000 4.9e-193 678.3 553 64.4
Eucgr.I02775 Eucalyptus grandis HOM05D000974 ORTHO05D006000 1.4e-192 676.8 476 71.8
SalBow8G2098 Salvia bowleyana HOM05D000974 ORTHO05D006000 4.2e-192 675.2 450 74.7
Os12g0197100 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 7.1e-192 674.5 480 69.6
Zm00001eb294330 Zea mays HOM05D000974 ORTHO05D006000 7.1e-192 674.5 501 67.7
SalBow4G1817 Salvia bowleyana HOM05D000974 ORTHO05D006000 3.3e-189 665.6 450 73.3
HPP92_026669 Vanilla planifolia HOM05D000974 ORTHO05D006000 1.6e-188 663.3 492 68.7
SEGI_14806 Sequoiadendron giganteum HOM05D000974 ORTHO05D006000 1.2e-186 657.1 455 70.8
Aqoxy1G01816 Aquilegia oxysepala HOM05D000974 ORTHO05D006000 3.4e-186 655.6 455 72.3
PSO170G5315 Papaver somniferum HOM05D000974 ORTHO05D006000 1.0e-185 654.1 561 63.1
PSO782G2965 Papaver somniferum HOM05D000974 ORTHO05D006000 3.8e-185 652.1 561 63.1
Migut.N00845 Erythranthe guttata HOM05D000974 ORTHO05D006000 9.3e-184 647.5 480 69.0
Gohir.D01G176200 Gossypium hirsutum HOM05D000974 ORTHO05D006000 1.2e-183 647.1 494 69.0
SGA_v2.0_scaffold42G15899 Striga asiatica HOM05D000974 ORTHO05D006000 1.3e-182 643.7 493 66.5
FAN10G2816 Fragaria x ananassa HOM05D000974 ORTHO05D006000 1.3e-180 637.1 422 76.3
SMO358G0426 Selaginella moellendorffii HOM05D000974 ORTHO05D006000 1.3e-177 627.1 450 68.0
CDE02G0137 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 3.2e-176 622.5 430 72.6
Pp3c22_7830 Physcomitrium patens HOM05D000974 ORTHO05D006000 3.2e-176 622.5 480 65.2
Pp3c19_9430 Physcomitrium patens HOM05D000974 ORTHO05D006000 6.1e-175 618.2 481 64.9
C08p13210 Brassica napus HOM05D000974 ORTHO05D006000 1.0e-174 617.5 433 76.4
Mapoly0041s0149 Marchantia polymorpha HOM05D000974 ORTHO05D006000 3.7e-172 609.0 556 58.6
AagrBONN_evm.TU.Sc2ySwM_368.1734 Anthoceros agrestis HOM05D000974 ORTHO05D006000 2.6e-165 586.3 455 64.6
CDE04G1010 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 2.2e-161 573.2 390 73.6
Oeu030849.1 Olea europaea HOM05D000974 ORTHO05D006000 2.0e-149 533.5 350 76.9
Gohir.A12G043800 Gossypium hirsutum HOM05D000974 ORTHO05D006000 7.2e-144 515.0 404 68.3
CBR_g36226 Chara braunii HOM05D000974 ORTHO05D006000 8.9e-142 508.1 458 58.1
MCO16G439 Micromonas commoda HOM05D000974 ORTHO05D006000 1.0e-137 494.6 453 59.2
Nitab4.5_0003281g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 3.3e-136 489.6 321 75.7
Cre18.g749497 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 1.0e-134 484.6 477 54.1
unitig_8.g3587 Utricularia gibba HOM05D000974 ORTHO05D006000 2.0e-133 480.3 326 73.6
Eucgr.I02773 Eucalyptus grandis HOM05D000974 ORTHO05D006000 4.4e-133 479.2 352 69.0
CSS0038090 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 8.3e-132 474.9 323 74.3
Zm00001eb342350 Zea mays HOM05D000974 ORTHO05D006000 2.4e-123 446.8 277 77.6
CSS0048615 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 1.7e-121 440.7 323 69.3
PRCOL_00005058 Prasinoderma coloniale HOM05D000974 ORTHO05D006000 9.9e-117 424.9 448 52.9
Nitab4.5_0003893g0040 Nicotiana tabacum HOM05D000974 ORTHO05D006000 2.7e-114 416.8 289 73.0
Pp3s32_121 Physcomitrium patens HOM05D000974 ORTHO05D006000 6.9e-102 375.6 456 45.2
arahy.Tifrunner.gnm1.ann1.FF9LB7 Arachis hypogaea HOM05D000974 ORTHO05D006000 1.1e-96 358.2 241 74.3
Cfa023437 Carpinus fangiana HOM05D000974 ORTHO05D006000 7.1e-91 339.0 460 42.4
Nitab4.5_0003893g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 7.1e-75 285.8 175 77.7
Cfa022594 Carpinus fangiana HOM05D000974 ORTHO05D006000 1.0e-68 265.4 382 40.6
CSS0011192 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 2.5e-51 207.6 135 74.1
Nitab4.5_0001773g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 6.7e-49 199.5 210 54.8
C03p74280 Brassica napus HOM05D000974 ORTHO05D016809 1.2e-45 188.7 198 57.6
Cre18.g749647 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 1.2e-45 188.7 180 54.4
BraA07t28236Z Brassica rapa HOM05D000974 ORTHO05D016809 2.6e-45 187.6 173 63.6
arahy.Tifrunner.gnm1.ann1.LT2KYF Arachis hypogaea HOM05D000974 ORTHO05D006000 1.0e-44 185.7 135 69.6
A07p04420 Brassica napus HOM05D000974 ORTHO05D016809 1.0e-44 185.7 172 63.4
BcaC04g19187 Brassica carinata HOM05D000974 ORTHO05D016809 2.9e-44 184.1 195 57.4
BcaC01g02641 Brassica carinata HOM05D000974 ORTHO05D016809 1.1e-43 182.2 161 65.2
C08p14510 Brassica napus HOM05D000974 ORTHO05D016809 5.5e-43 179.9 193 57.0
unitig_8.g3588 Utricularia gibba HOM05D000974 ORTHO05D006000 8.8e-41 172.6 120 70.0
Hund18887 Selenicereus undatus HOM05D000974 ORTHO05D006000 1.3e-39 168.7 221 50.2
CSS0022082 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 1.7e-39 168.3 129 66.7
BcaC01g01590 Brassica carinata HOM05D000974 ORTHO05D016809 1.4e-38 165.2 192 53.6
Actinidia38994 Actinidia chinensis HOM05D000974 ORTHO05D006000 1.2e-32 145.6 94 71.3
C03p62530 Brassica napus HOM05D000974 ORTHO05D016809 1.5e-32 145.2 158 57.6
BolC3t18510H Brassica oleracea HOM05D000974 ORTHO05D016809 1.5e-32 145.2 158 57.6
A06p28170 Brassica napus HOM05D000974 ORTHO05D016809 4.4e-32 143.7 182 52.7
arahy.Tifrunner.gnm1.ann1.3IC4JN Arachis hypogaea HOM05D000974 ORTHO05D006000 7.7e-29 132.9 114 62.3
Sabra03G0003100 Salix brachista HOM05D000974 ORTHO05D006000 9.2e-22 109.4 78 67.9
Nitab4.5_0000787g0090 Nicotiana tabacum HOM05D000017 ORTHO05D000308 8.6e-20 102.8 82 65.9
Haze_26160 Corylus avellana HOM05D003155 ORTHO05D004342 4.3e-19 100.5 259 30.9
arahy.Tifrunner.gnm1.ann1.G9FX3A Arachis hypogaea HOM05D000974 ORTHO05D083560 9.8e-16 89.4 57 73.7


User provided reference genes

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