Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG1G14750 Aethionema arabicum HOM05D001533 ORTHO05D005122 1.7e-200 702.6 386 100.0
Thhalv10004494m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 3.4e-124 449.1 349 76.2
AT5G66250 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 9.5e-111 404.4 345 72.8
AL8G45270 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 2.1e-110 403.3 344 73.0
Sp2g30440 Schrenkiella parvula HOM05D001533 ORTHO05D005122 2.2e-107 393.3 344 71.2
Ciclev10025997m.g Citrus clementina HOM05D001533 ORTHO05D005122 2.3e-104 383.3 343 64.1
Thecc.01G020200 Theobroma cacao HOM05D001533 ORTHO05D005122 2.5e-103 379.8 343 64.4
COL.COLO4_21923 Corchorus olitorius HOM05D001533 ORTHO05D005122 7.3e-103 378.3 344 64.8
Carub.0008s2824 Capsella rubella HOM05D001533 ORTHO05D005122 1.2e-102 377.5 344 69.2
Cpa.g.sc6.238 Carica papaya HOM05D001533 ORTHO05D005122 1.8e-101 373.6 343 63.6
RcHm_v2.0_Chr2g0099581 Rosa chinensis HOM05D001533 ORTHO05D005122 1.5e-100 370.5 343 62.4
QL06p033501 Quercus lobata HOM05D001533 ORTHO05D005122 7.5e-100 368.2 343 63.0
Duzib187G1725 Durio zibethinus HOM05D001533 ORTHO05D005122 1.3e-99 367.5 345 62.3
FvH4_1g11960 Fragaria vesca HOM05D001533 ORTHO05D005122 1.7e-99 367.1 343 62.1
Lj4g0002557 Lotus japonicus HOM05D001533 ORTHO05D005122 2.9e-99 366.3 343 60.9
FAN26G0519 Fragaria x ananassa HOM05D001533 ORTHO05D005122 6.4e-99 365.2 343 61.8
Prupe.7G167200 Prunus persica HOM05D001533 ORTHO05D005122 8.3e-99 364.8 343 61.2
Haze_03774 Corylus avellana HOM05D001533 ORTHO05D005122 1.1e-98 364.4 339 62.5
FAN19G0503 Fragaria x ananassa HOM05D001533 ORTHO05D005122 1.4e-98 364.0 343 61.5
FAN28G1062 Fragaria x ananassa HOM05D001533 ORTHO05D005122 1.4e-98 364.0 343 61.8
Actinidia31002 Actinidia chinensis HOM05D001533 ORTHO05D005122 1.9e-98 363.6 343 61.2
CiPaw.07G057700 Carya illinoinensis HOM05D001533 ORTHO05D005122 2.4e-98 363.2 338 62.7
Manes.01G145100 Manihot esculenta HOM05D001533 ORTHO05D005122 3.2e-98 362.8 343 62.4
Cfa006964 Carpinus fangiana HOM05D001533 ORTHO05D005122 4.1e-98 362.5 336 62.8
FAN23G2041 Fragaria x ananassa HOM05D001533 ORTHO05D005122 4.1e-98 362.5 342 61.7
Rhsim08G0034200 Rhododendron simsii HOM05D001533 ORTHO05D005122 4.1e-98 362.5 343 61.5
CiPaw.08G132200 Carya illinoinensis HOM05D001533 ORTHO05D005122 1.2e-97 360.9 343 61.5
MD02G1133400 Malus domestica HOM05D001533 ORTHO05D005122 4.6e-97 359.0 343 60.6
TWI53G2031 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 7.8e-97 358.2 343 61.5
CAN.G1671.6 Capsicum annuum HOM05D001533 ORTHO05D005122 1.0e-96 357.8 343 60.6
Peaxi162Scf00083g00714 Petunia axillaris HOM05D001533 ORTHO05D005122 1.0e-96 357.8 343 60.9
MELO3C016393.2 Cucumis melo HOM05D001533 ORTHO05D005122 1.7e-96 357.1 343 61.2
Nitab4.5_0006286g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 1.7e-96 357.1 343 60.6
Phvul.002G109200 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 3.0e-96 356.3 343 59.2
vmacro18418 Vaccinium macrocarpon HOM05D001533 ORTHO05D005122 3.0e-96 356.3 345 60.9
Glyma.02G049100 Glycine max HOM05D001533 ORTHO05D005122 6.6e-96 355.1 343 60.1
Potri.005G115500 Populus trichocarpa HOM05D001533 ORTHO05D005122 8.6e-96 354.8 341 61.9
Sabra05G0094600 Salix brachista HOM05D001533 ORTHO05D005122 8.6e-96 354.8 370 58.6
CsaV3_4G005560 Cucumis sativus L. HOM05D001533 ORTHO05D005122 1.1e-95 354.4 343 60.9
VMungo1215G1138 Vigna mungo HOM05D001533 ORTHO05D005122 9.5e-95 351.3 343 58.9
Glyma.01G166700 Glycine max HOM05D001533 ORTHO05D005122 1.2e-94 350.9 343 58.9
TWI09G0584 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 2.8e-94 349.7 343 59.8
CAN.G893.6 Capsicum annuum HOM05D001533 ORTHO05D005122 6.2e-94 348.6 343 59.5
VMungo0251G1454 Vigna mungo HOM05D001533 ORTHO05D005122 6.2e-94 348.6 348 57.8
Solyc02g083990.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 1.1e-93 347.8 343 58.6
ClCG07G008590 Citrullus lanatus HOM05D001533 ORTHO05D005122 1.4e-93 347.4 336 60.7
CSS0008566 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 8.9e-93 344.7 317 63.4
Nitab4.5_0000438g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 1.2e-92 344.4 316 62.7
Sopen02g028790 Solanum pennellii HOM05D001533 ORTHO05D005122 1.2e-92 344.4 343 58.0
CSS0030027 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 1.3e-91 340.9 343 60.3
Nn6g32353 Nelumbo nucifera HOM05D001533 ORTHO05D005122 1.3e-91 340.9 341 60.4
Potri.007G012600 Populus trichocarpa HOM05D001533 ORTHO05D005122 1.3e-91 340.9 341 60.1
TPR.G30063 Trifolium pratense HOM05D001533 ORTHO05D005122 1.3e-91 340.9 343 57.1
Phvul.003G262700 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 1.7e-91 340.5 338 57.4
Lj2g0008453 Lotus japonicus HOM05D001533 ORTHO05D005122 3.8e-91 339.3 343 57.1
Sed0027203 Sechium edule HOM05D001533 ORTHO05D005122 4.9e-91 339.0 343 58.9
Cc00_g26600 Coffea canephora HOM05D001533 ORTHO05D005122 6.4e-91 338.6 343 58.3
Solyc03g033580.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 1.1e-90 337.8 343 57.7
Dinv33621 Davidia involucrata HOM05D001533 ORTHO05D005122 7.1e-90 335.1 343 57.4
Sopen03g006360 Solanum pennellii HOM05D001533 ORTHO05D005122 1.6e-89 334.0 343 57.1
PSO170G0469 Papaver somniferum HOM05D001533 ORTHO05D005122 3.5e-89 332.8 338 57.4
TAR381G0830 Trochodendron aralioides HOM05D001533 ORTHO05D005122 3.9e-88 329.3 343 56.6
Ca_22369_v3 Cicer arietinum L. HOM05D001533 ORTHO05D005122 6.6e-88 328.6 343 56.3
C09p11970 Brassica napus HOM05D001533 ORTHO05D005122 8.7e-88 328.2 286 70.6
THA.LOC104804260 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 1.5e-87 327.4 345 55.9
PSO700G0386 Papaver somniferum HOM05D001533 ORTHO05D005122 9.6e-87 324.7 338 55.6
Gohir.A02G170000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 1.2e-86 324.3 343 56.6
A09p10100 Brassica napus HOM05D001533 ORTHO05D005122 2.1e-86 323.6 285 69.8
Glyma.16G129200 Glycine max HOM05D001533 ORTHO05D005122 2.1e-86 323.6 343 56.0
BcaNung04495 Brassica carinata HOM05D001533 ORTHO05D005122 2.8e-86 323.2 271 72.0
Gorai.003G010300 Gossypium raimondii HOM05D001533 ORTHO05D005122 3.6e-86 322.8 347 56.2
BolC9t54085H Brassica oleracea HOM05D001533 ORTHO05D005122 3.1e-85 319.7 304 66.1
CANSAT80G2154 Cannabis sativa HOM05D001533 ORTHO05D005122 9.0e-85 318.2 343 57.4
Glyma.11G076600 Glycine max HOM05D001533 ORTHO05D005122 2.0e-84 317.0 331 56.2
Peaxi162Scf00034g00264 Petunia axillaris HOM05D001533 ORTHO05D005122 3.4e-84 316.2 345 55.1
Eucgr.J02426 Eucalyptus grandis HOM05D001533 ORTHO05D005122 2.2e-83 313.5 343 55.7
MSTRG.2705 Avicennia marina HOM05D001533 ORTHO05D005122 1.4e-82 310.8 317 57.1
BraA09t36653Z Brassica rapa HOM05D001533 ORTHO05D005122 1.9e-82 310.5 297 66.7
THA.LOC104807492 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 1.9e-82 310.5 342 54.1
Gohir.A11G176200 Gossypium hirsutum HOM05D001533 ORTHO05D005122 1.6e-81 307.4 341 56.6
Duzib264G0112 Durio zibethinus HOM05D001533 ORTHO05D005122 4.6e-81 305.8 345 54.8
Os06g0715400 Oryza sativa ssp. japonica HOM05D001533 ORTHO05D005122 6.0e-81 305.4 328 54.6
SGA_v2.0_scaffold137G35090 Striga asiatica HOM05D001533 ORTHO05D005122 6.0e-81 305.4 343 52.5
Oeu005320.1 Olea europaea HOM05D001533 ORTHO05D005122 1.0e-80 304.7 295 61.0
Sp3g31420 Schrenkiella parvula HOM05D001533 ORTHO05D005122 3.9e-80 302.8 344 54.1
AUR62043756 Chenopodium quinoa HOM05D001533 ORTHO05D005122 3.3e-79 299.7 343 54.5
AUR62044201 Chenopodium quinoa HOM05D001533 ORTHO05D005122 3.3e-79 299.7 343 54.5
arahy.Tifrunner.gnm1.ann1.H1V2NS Arachis hypogaea HOM05D001533 ORTHO05D005122 1.3e-78 297.7 326 54.6
AL3G51060 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 1.6e-78 297.4 345 53.3
AT2G17990 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 1.6e-78 297.4 348 52.9
Gohir.D03G010000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 1.6e-78 297.4 343 53.4
Zm00001eb228040 Zea mays HOM05D001533 ORTHO05D005122 4.8e-78 295.8 320 55.9
Lj2C466T13 Lonicera japonica HOM05D001533 ORTHO05D005122 1.1e-77 294.7 344 54.1
Lalb_Chr09g0321781 Lupinus albus HOM05D001533 ORTHO05D005122 1.8e-77 293.9 343 53.4
Carub.0003s3213 Capsella rubella HOM05D001533 ORTHO05D005122 1.5e-76 290.8 344 52.0
Gorai.007G195800 Gossypium raimondii HOM05D001533 ORTHO05D005122 2.6e-76 290.0 345 53.6
AUR62007522 Chenopodium quinoa HOM05D001533 ORTHO05D005122 7.6e-76 288.5 339 53.1
Hma1.2p1_2281F.1_g318810 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 1.7e-75 287.3 292 57.9
Manes.02G103600 Manihot esculenta HOM05D001533 ORTHO05D005122 2.2e-75 287.0 343 52.2
EL10As8g23833 Beta vulgaris HOM05D001533 ORTHO05D005122 2.9e-75 286.6 315 56.5
Nitab4.5_0006119g0010 Nicotiana tabacum HOM05D001533 ORTHO05D005122 3.8e-75 286.2 342 51.2
Atru.chr3.790 Acer truncatum HOM05D001533 ORTHO05D005122 4.9e-75 285.8 343 51.6
CARHR108480 Cardamine hirsuta HOM05D001533 ORTHO05D005122 8.4e-75 285.0 344 51.5
Gohir.D11G183900 Gossypium hirsutum HOM05D001533 ORTHO05D005122 8.4e-75 285.0 343 53.4
Hma1.2p1_0743F.1_g211570 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 1.9e-74 283.9 343 51.6
DCAR_016613 Daucus carota HOM05D001533 ORTHO05D005122 4.6e-73 279.3 338 51.2
SalBow3G3323 Salvia bowleyana HOM05D001533 ORTHO05D005122 7.9e-73 278.5 396 46.2
Aa31LG8G15170 Aethionema arabicum HOM05D001533 ORTHO05D005122 1.1e-71 274.6 352 51.1
Duzib147G0876 Durio zibethinus HOM05D001533 ORTHO05D005122 1.5e-71 274.2 343 51.3
C07p04980 Brassica napus HOM05D001533 ORTHO05D005122 2.5e-71 273.5 353 48.7
A07p02680 Brassica napus HOM05D001533 ORTHO05D005122 3.3e-71 273.1 353 48.7
BraA07t28064Z Brassica rapa HOM05D001533 ORTHO05D005122 3.3e-71 273.1 353 48.7
Nn5g29330 Nelumbo nucifera HOM05D001533 ORTHO05D005122 3.3e-71 273.1 340 50.6
Thhalv10022777m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 9.6e-71 271.6 344 49.4
CANSAT01G1879 Cannabis sativa HOM05D001533 ORTHO05D005122 3.7e-70 269.6 343 51.0
Oeu035307.1 Olea europaea HOM05D001533 ORTHO05D005122 3.7e-70 269.6 343 50.1
BcaC06g36351 Brassica carinata HOM05D001533 ORTHO05D005122 6.2e-70 268.9 347 48.7
GSVIVG01018794001 Vitis vinifera HOM05D001533 ORTHO05D005122 6.2e-70 268.9 343 51.0
Hund16484 Selenicereus undatus HOM05D001533 ORTHO05D005122 1.8e-69 267.3 343 49.3
AL6G43540 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 5.3e-69 265.8 344 50.0
Lj4C217T16 Lonicera japonica HOM05D001533 ORTHO05D005122 9.0e-69 265.0 321 54.2
arahy.Tifrunner.gnm1.ann1.JA3WP2 Arachis hypogaea HOM05D001533 ORTHO05D005122 2.0e-68 263.8 290 52.8
BcaB08g34783 Brassica carinata HOM05D001533 ORTHO05D005122 2.0e-68 263.8 344 48.5
CARHR281470 Cardamine hirsuta HOM05D001533 ORTHO05D005122 9.9e-68 261.5 233 69.1
PGR119G1411 Punica granatum HOM05D001533 ORTHO05D005122 3.8e-67 259.6 346 50.9
A06p33470 Brassica napus HOM05D001533 ORTHO05D005122 1.1e-66 258.1 344 49.1
BolC3t18147H Brassica oleracea HOM05D001533 ORTHO05D005122 1.9e-66 257.3 342 49.4
PGSC0003DMG400003635 Solanum tuberosum HOM05D001533 ORTHO05D005122 2.4e-66 256.9 262 56.1
BraA06t26280Z Brassica rapa HOM05D001533 ORTHO05D005122 4.2e-66 256.1 342 49.1
BcaNung04499 Brassica carinata HOM05D001533 ORTHO05D005122 1.6e-65 254.2 240 66.7
ECA246G3074 Erigeron canadensis HOM05D001533 ORTHO05D005122 2.7e-65 253.4 343 47.2
Lalb_Chr05g0229891 Lupinus albus HOM05D001533 ORTHO05D005122 2.7e-65 253.4 343 46.9
Nitab4.5_0001959g0020 Nicotiana tabacum HOM05D001533 ORTHO05D005122 7.9e-65 251.9 288 52.4
Lalb_Chr16g0377521 Lupinus albus HOM05D001533 ORTHO05D005122 2.3e-64 250.4 343 46.9
TAR628G0959 Trochodendron aralioides HOM05D001533 ORTHO05D005122 2.3e-64 250.4 343 47.2
Aqoxy6G02302 Aquilegia oxysepala HOM05D001533 ORTHO05D005122 1.1e-63 248.1 294 54.1
Aa31LG6G13050 Aethionema arabicum HOM05D001533 ORTHO05D005122 7.4e-63 245.4 346 44.8
C03p58890 Brassica napus HOM05D001533 ORTHO05D005122 9.6e-63 245.0 342 48.2
Thhalv10025665m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 2.6e-60 236.9 344 45.9
CDE04G1263 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 7.1e-58 228.8 316 46.2
Oeu048459.1 Olea europaea HOM05D001533 ORTHO05D005122 2.1e-57 227.3 316 47.2
Sp7g33880 Schrenkiella parvula HOM05D001533 ORTHO05D005122 2.1e-57 227.3 289 49.5
CDE02G4489 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 2.5e-55 220.3 318 45.3
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 9.7e-55 218.4 296 47.3
MBI05_g43883_MAGBIO Magnolia biondii HOM05D001533 ORTHO05D005122 2.8e-54 216.9 342 43.9
Carub.0007s0413 Capsella rubella HOM05D001533 ORTHO05D005122 6.3e-54 215.7 333 44.4
Psat4g098560 Pisum sativum HOM05D001533 ORTHO05D005122 3.4e-52 209.9 344 41.9
MD15G1246600 Malus domestica HOM05D001533 ORTHO05D005122 1.4e-50 204.5 135 83.7
Sc16g0002080 Simmondsia chinensis HOM05D001533 ORTHO05D005122 7.2e-50 202.2 343 42.3
Ah.02g124450 Amaranthus hybridus HOM05D001533 ORTHO05D005122 1.8e-48 197.6 250 48.0
Lsat_1_v5_gn_4_146800 Lactuca sativa HOM05D001533 ORTHO05D005122 4.3e-47 193.0 341 42.2
BolC7t40899H Brassica oleracea HOM05D001533 ORTHO05D005122 5.7e-47 192.6 292 42.8
Lsat_1_v5_gn_4_146821 Lactuca sativa HOM05D001533 ORTHO05D005122 1.3e-46 191.4 352 40.6
SMO358G0186 Selaginella moellendorffii HOM05D001533 ORTHO05D005122 1.3e-46 191.4 290 45.2
unitig_899.g14709 Utricularia gibba HOM05D001533 ORTHO05D000063 2.6e-44 183.7 142 71.1
AagrBONN_evm.TU.Sc2ySwM_228.4945 Anthoceros agrestis HOM05D001533 ORTHO05D005122 1.7e-43 181.0 352 38.4
AUR62043805 Chenopodium quinoa HOM05D001533 ORTHO05D005122 2.4e-37 160.6 155 61.9
HPP92_007128 Vanilla planifolia HOM05D001533 ORTHO05D005122 2.6e-36 157.1 177 54.2
Medtr8g076020 Medicago truncatula HOM05D001533 ORTHO05D005122 2.9e-35 153.7 343 35.6
AT4G36105 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 2.5e-34 150.6 295 41.0
SEGI_32707 Sequoiadendron giganteum HOM05D001533 ORTHO05D005122 8.0e-33 145.6 344 33.7
ATR0680G362 Amborella trichopoda HOM05D001533 ORTHO05D005122 3.9e-32 143.3 288 39.2
C01p02930 Brassica napus HOM05D001533 ORTHO05D024397 1.1e-29 135.2 282 39.0
CARHR244500 Cardamine hirsuta HOM05D001533 ORTHO05D005122 4.7e-25 119.8 319 35.1
unitig_699.g19710 Utricularia gibba HOM05D001533 ORTHO05D005122 4.7e-25 119.8 169 46.7
BolC1t00279H Brassica oleracea HOM05D001533 ORTHO05D024397 5.2e-24 116.3 287 36.9
HanXRQChr16g0531321 Helianthus annuus HOM05D001533 ORTHO05D005122 9.7e-23 112.1 167 43.1
A01p02640 Brassica napus HOM05D001533 ORTHO05D024397 1.0e-19 102.1 282 32.6
BraA01t00250Z Brassica rapa HOM05D001533 ORTHO05D024397 1.0e-19 102.1 282 32.6
CARHR281460 Cardamine hirsuta HOM05D001533 ORTHO05D019802 9.4e-18 95.5 55 96.4
A09p11640 Brassica napus HOM05D001533 ORTHO05D019802 4.7e-17 93.2 127 52.8
arahy.Tifrunner.gnm1.ann1.2HD0B7 Arachis hypogaea HOM05D001533 ORTHO05D019802 1.4e-13 81.6 54 81.5
BraA09t36810Z Brassica rapa HOM05D001533 ORTHO05D019802 2.7e-12 77.4 111 48.6
BcaNung00764 Brassica carinata HOM05D001533 ORTHO05D024397 2.9e-11 73.9 287 31.4
BcaC04g22938 Brassica carinata HOM05D001533 ORTHO05D019802 7.5e-07 59.3 125 40.8
BolC9t54258H Brassica oleracea HOM05D001533 ORTHO05D019802 9.8e-07 58.9 131 40.5


User provided reference genes

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