Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG11G890 Aethionema arabicum HOM05D003618 ORTHO05D004302 1.7e-271 938.7 474 100.0
Aa31LG11G900 Aethionema arabicum HOM05D003618 ORTHO05D004302 3.4e-243 844.7 494 87.9
BcaNung01381 Brassica carinata HOM05D003618 ORTHO05D004302 2.2e-234 815.5 476 85.9
AL8G39750 Arabidopsis lyrata HOM05D003618 ORTHO05D004302 2.9e-234 815.1 475 85.7
Sp2g25950 Schrenkiella parvula HOM05D003618 ORTHO05D004302 2.4e-233 812.0 476 85.3
Thhalv10004122m.g Eutrema salsugineum HOM05D003618 ORTHO05D004302 1.6e-232 809.3 476 85.3
BcaB02g09693 Brassica carinata HOM05D003618 ORTHO05D004302 3.5e-232 808.1 476 85.1
Carub.0008s2351 Capsella rubella HOM05D003618 ORTHO05D004302 1.7e-231 805.8 476 84.7
AT5G62790 Arabidopsis thaliana HOM05D003618 ORTHO05D004302 8.6e-231 803.5 476 84.7
BcaC04g23393 Brassica carinata HOM05D003618 ORTHO05D004302 5.6e-230 800.8 476 85.3
C09p08850 Brassica napus HOM05D003618 ORTHO05D004302 5.6e-230 800.8 476 85.3
BolC9t53797H Brassica oleracea HOM05D003618 ORTHO05D004302 5.6e-230 800.8 476 85.3
A09p07850 Brassica napus HOM05D003618 ORTHO05D004302 4.7e-229 797.7 476 85.1
CARHR276570 Cardamine hirsuta HOM05D003618 ORTHO05D004302 4.7e-229 797.7 475 84.2
A06p29560 Brassica napus HOM05D003618 ORTHO05D004302 6.8e-228 793.9 478 84.3
BraA09t36436Z Brassica rapa HOM05D003618 ORTHO05D004302 3.2e-225 785.0 499 81.2
Prupe.5G174000 Prunus persica HOM05D003618 ORTHO05D004302 1.3e-223 779.6 474 81.6
THA.LOC104818235 Tarenaya hassleriana HOM05D003618 ORTHO05D004302 5.1e-223 777.7 474 82.1
BcaC01g02522 Brassica carinata HOM05D003618 ORTHO05D004302 6.6e-223 777.3 482 82.4
C03p63940 Brassica napus HOM05D003618 ORTHO05D004302 6.6e-223 777.3 482 82.4
BolC3t18648H Brassica oleracea HOM05D003618 ORTHO05D004302 6.6e-223 777.3 482 82.4
BraA06t25902Z Brassica rapa HOM05D003618 ORTHO05D004302 1.9e-222 775.8 498 80.5
MD06G1174000 Malus domestica HOM05D003618 ORTHO05D004302 5.6e-222 774.2 475 81.5
MD14G1180500 Malus domestica HOM05D003618 ORTHO05D004302 7.3e-222 773.9 475 81.1
Potri.012G080900 Populus trichocarpa HOM05D003618 ORTHO05D004302 6.2e-221 770.8 474 80.8
Potri.015G076200 Populus trichocarpa HOM05D003618 ORTHO05D004302 6.2e-221 770.8 474 81.0
Manes.06G104700 Manihot esculenta HOM05D003618 ORTHO05D004302 3.1e-220 768.5 474 80.4
RcHm_v2.0_Chr7g0193571 Rosa chinensis HOM05D003618 ORTHO05D004302 6.9e-220 767.3 474 80.6
FvH4_5g05300 Fragaria vesca HOM05D003618 ORTHO05D004302 1.2e-219 766.5 474 80.4
FAN18G3775 Fragaria x ananassa HOM05D003618 ORTHO05D004302 1.5e-219 766.1 474 80.4
Sabra15G0101400 Salix brachista HOM05D003618 ORTHO05D004302 5.8e-219 764.2 474 80.4
Manes.14G065900 Manihot esculenta HOM05D003618 ORTHO05D004302 9.9e-219 763.5 474 80.4
CSS0045852 Camellia sinensis var. sinensis HOM05D003618 ORTHO05D004302 3.8e-218 761.5 472 80.7
GSVIVG01007752001 Vitis vinifera HOM05D003618 ORTHO05D004302 1.4e-217 759.6 474 79.7
Oeu035988.1 Olea europaea HOM05D003618 ORTHO05D004302 4.2e-217 758.1 477 80.1
Haze_07469 Corylus avellana HOM05D003618 ORTHO05D004302 1.2e-216 756.5 474 80.0
Eucgr.B00316 Eucalyptus grandis HOM05D003618 ORTHO05D004302 7.8e-216 753.8 479 80.2
Oeu040829.1 Olea europaea HOM05D003618 ORTHO05D004302 1.0e-215 753.4 476 80.3
Peaxi162Scf00017g02915 Petunia axillaris HOM05D003618 ORTHO05D004302 1.3e-215 753.1 479 79.3
Cfa019131 Carpinus fangiana HOM05D003618 ORTHO05D004302 1.7e-215 752.7 474 80.0
Solyc03g114340.3 Solanum lycopersicum HOM05D003618 ORTHO05D004302 3.0e-215 751.9 477 79.9
Sopen03g033440 Solanum pennellii HOM05D003618 ORTHO05D004302 3.0e-215 751.9 477 79.9
Migut.I00013 Erythranthe guttata HOM05D003618 ORTHO05D004302 1.9e-214 749.2 477 79.5
Ciclev10020004m.g Citrus clementina HOM05D003618 ORTHO05D004302 4.3e-214 748.0 476 78.8
Nitab4.5_0007719g0010 Nicotiana tabacum HOM05D003618 ORTHO05D004302 4.3e-214 748.0 479 79.7
arahy.Tifrunner.gnm1.ann1.2KV8GB Arachis hypogaea HOM05D003618 ORTHO05D004302 7.3e-214 747.3 475 78.9
QL10p011706 Quercus lobata HOM05D003618 ORTHO05D004302 7.3e-214 747.3 475 79.4
Aqoxy3G02948 Aquilegia oxysepala HOM05D003618 ORTHO05D004302 9.6e-214 746.9 464 81.5
Duzib205G1198 Durio zibethinus HOM05D003618 ORTHO05D004302 9.6e-214 746.9 477 78.8
Nitab4.5_0009783g0020 Nicotiana tabacum HOM05D003618 ORTHO05D004302 1.3e-213 746.5 478 79.9
Cc04_g14010 Coffea canephora HOM05D003618 ORTHO05D004302 1.6e-213 746.1 471 78.8
COL.COLO4_30036 Corchorus olitorius HOM05D003618 ORTHO05D004302 1.6e-213 746.1 478 78.9
Actinidia19319 Actinidia chinensis HOM05D003618 ORTHO05D004302 2.8e-213 745.3 449 82.2
Gohir.A09G171800 Gossypium hirsutum HOM05D003618 ORTHO05D004302 2.8e-213 745.3 475 79.4
FAN04G2056 Fragaria x ananassa HOM05D003618 ORTHO05D004302 4.8e-213 744.6 516 73.8
FAN13G0153 Fragaria x ananassa HOM05D003618 ORTHO05D004302 4.8e-213 744.6 516 73.6
Gohir.D09G167500 Gossypium hirsutum HOM05D003618 ORTHO05D004302 4.8e-213 744.6 475 79.2
FAN18G3061 Fragaria x ananassa HOM05D003618 ORTHO05D004302 6.2e-213 744.2 516 73.4
Nn4g22770 Nelumbo nucifera HOM05D003618 ORTHO05D004302 6.2e-213 744.2 470 79.1
Gorai.006G189200 Gossypium raimondii HOM05D003618 ORTHO05D004302 8.1e-213 743.8 475 79.4
arahy.Tifrunner.gnm1.ann1.9FL7A6 Arachis hypogaea HOM05D003618 ORTHO05D004302 1.1e-212 743.4 475 78.7
Aa31sc1732G20 Aethionema arabicum HOM05D003618 ORTHO05D004302 1.4e-212 743.0 403 92.6
FAN08G0480 Fragaria x ananassa HOM05D003618 ORTHO05D004302 1.4e-212 743.0 516 73.4
Medtr4g106870 Medicago truncatula HOM05D003618 ORTHO05D004302 5.3e-212 741.1 475 77.7
Thecc.03G012400 Theobroma cacao HOM05D003618 ORTHO05D004302 5.3e-212 741.1 477 78.6
TAR629G0089 Trochodendron aralioides HOM05D003618 ORTHO05D004302 2.0e-211 739.2 459 81.3
CiPaw.11G026400 Carya illinoinensis HOM05D003618 ORTHO05D004302 5.8e-211 737.6 474 78.7
Atru.chr9.2476 Acer truncatum HOM05D003618 ORTHO05D004302 7.6e-211 737.3 474 78.1
Lj5A124T67 Lonicera japonica HOM05D003618 ORTHO05D004302 1.7e-210 736.1 470 79.6
SalBow5G0347 Salvia bowleyana HOM05D003618 ORTHO05D004302 1.7e-210 736.1 477 77.8
SalBow5G5681 Salvia bowleyana HOM05D003618 ORTHO05D004302 1.7e-210 736.1 477 77.8
Glyma.05G037500 Glycine max HOM05D003618 ORTHO05D004302 2.2e-210 735.7 475 77.5
AUR62030965 Chenopodium quinoa HOM05D003618 ORTHO05D004302 4.9e-210 734.6 450 80.9
TPR.G37486 Trifolium pratense HOM05D003618 ORTHO05D004302 8.4e-210 733.8 480 77.1
Phvul.003G200300 Phaseolus vulgaris HOM05D003618 ORTHO05D004302 1.1e-209 733.4 475 78.1
Dinv20656 Davidia involucrata HOM05D003618 ORTHO05D004302 2.4e-209 732.3 474 78.1
SGA_v2.0_scaffold90G27940 Striga asiatica HOM05D003618 ORTHO05D004302 3.2e-209 731.9 478 77.2
Lalb_Chr13g0297811 Lupinus albus HOM05D003618 ORTHO05D004302 4.2e-209 731.5 476 76.9
Os01g0106900 Oryza sativa ssp. japonica HOM05D003618 ORTHO05D004302 5.4e-209 731.1 461 80.3
VMungo1215G2328 Vigna mungo HOM05D003618 ORTHO05D004302 5.4e-209 731.1 475 77.5
Migut.I00014 Erythranthe guttata HOM05D003618 ORTHO05D004302 2.1e-208 729.2 466 78.3
Rhsim08G0171900 Rhododendron simsii HOM05D003618 ORTHO05D004302 2.1e-208 729.2 500 75.4
MSTRG.23128 Avicennia marina HOM05D003618 ORTHO05D004302 2.7e-208 728.8 477 76.7
CANSAT80G1130 Cannabis sativa HOM05D003618 ORTHO05D004302 2.7e-208 728.8 476 76.9
ClCG06G017010 Citrullus lanatus HOM05D003618 ORTHO05D004302 3.5e-208 728.4 474 78.1
Zm00001eb126690 Zea mays HOM05D003618 ORTHO05D004302 6.0e-208 727.6 467 79.4
Ca_21917_v3 Cicer arietinum L. HOM05D003618 ORTHO05D004302 1.0e-207 726.9 476 76.9
unitig_0.g1445 Utricularia gibba HOM05D003618 ORTHO05D004302 1.0e-207 726.9 480 76.7
PSO170G5081 Papaver somniferum HOM05D003618 ORTHO05D004302 1.3e-207 726.5 467 79.0
TAR622G0131 Trochodendron aralioides HOM05D003618 ORTHO05D004302 1.3e-207 726.5 465 78.7
MELO3C026292.2 Cucumis melo HOM05D003618 ORTHO05D004302 2.3e-207 725.7 474 77.2
CsaV3_1G001500 Cucumis sativus L. HOM05D003618 ORTHO05D004302 2.3e-207 725.7 474 77.6
Glyma.17G089600 Glycine max HOM05D003618 ORTHO05D004302 2.3e-207 725.7 475 77.3
CDE07G0194 Ceratophyllum demersum HOM05D003618 ORTHO05D004302 3.0e-207 725.3 468 78.2
Psat4g058000 Pisum sativum HOM05D003618 ORTHO05D004302 3.0e-207 725.3 473 77.0
AUR62008212 Chenopodium quinoa HOM05D003618 ORTHO05D004302 3.9e-207 724.9 474 77.0
Lj9A449G48 Lonicera japonica HOM05D003618 ORTHO05D004302 5.1e-207 724.5 519 72.8
TWI14G0558 Tripterygium wilfordii HOM05D003618 ORTHO05D004302 5.1e-207 724.5 476 78.6
Lj4g0012807 Lotus japonicus HOM05D003618 ORTHO05D004302 8.7e-207 723.8 477 75.9
DCAR_026133 Daucus carota HOM05D003618 ORTHO05D004302 1.1e-206 723.4 476 76.9
Lalb_Chr07g0182731 Lupinus albus HOM05D003618 ORTHO05D004302 1.1e-206 723.4 476 75.6
Sed0001158 Sechium edule HOM05D003618 ORTHO05D004302 1.5e-206 723.0 472 77.3
MSTRG.11450 Avicennia marina HOM05D003618 ORTHO05D004302 3.3e-206 721.8 477 75.9
ATR0730G147 Amborella trichopoda HOM05D003618 ORTHO05D004302 7.4e-206 720.7 470 78.9
HanXRQChr09g0272201 Helianthus annuus HOM05D003618 ORTHO05D004302 1.6e-205 719.5 475 75.8
HPP92_004862 Vanilla planifolia HOM05D003618 ORTHO05D004302 1.6e-205 719.5 445 80.7
CANSAT80G1364 Cannabis sativa HOM05D003618 ORTHO05D004302 2.1e-205 719.2 473 75.7
PSO455G0039 Papaver somniferum HOM05D003618 ORTHO05D004302 2.1e-205 719.2 467 77.9
vmacro19385 Vaccinium macrocarpon HOM05D003618 ORTHO05D004302 2.1e-205 719.2 467 78.4
Lalb_Chr12g0201571 Lupinus albus HOM05D003618 ORTHO05D004302 3.6e-205 718.4 500 73.2
PGR083G1520 Punica granatum HOM05D003618 ORTHO05D004302 3.6e-205 718.4 469 77.8
Lsat_1_v5_gn_5_14440 Lactuca sativa HOM05D003618 ORTHO05D004302 1.1e-204 716.8 473 75.9
HanXRQChr05g0153451 Helianthus annuus HOM05D003618 ORTHO05D004302 1.4e-204 716.5 474 76.4
Sed0011107 Sechium edule HOM05D003618 ORTHO05D004302 1.4e-204 716.5 475 77.5
Hund02742 Selenicereus undatus HOM05D003618 ORTHO05D004302 1.3e-202 709.9 470 76.6
Lsat_1_v5_gn_4_75261 Lactuca sativa HOM05D003618 ORTHO05D004302 4.9e-202 708.0 464 75.2
ECA232G0993 Erigeron canadensis HOM05D003618 ORTHO05D004302 1.1e-201 706.8 476 75.2
Gohir.A11G001200 Gossypium hirsutum HOM05D003618 ORTHO05D004302 3.2e-201 705.3 469 76.8
Ah.11g051630 Amaranthus hybridus HOM05D003618 ORTHO05D004302 2.3e-199 699.1 474 75.1
SEGI_37686 Sequoiadendron giganteum HOM05D003618 ORTHO05D004302 5.1e-199 698.0 448 77.9
Gorai.007G001700 Gossypium raimondii HOM05D003618 ORTHO05D004302 1.1e-198 696.8 457 76.4
Ciclev10019836m.g Citrus clementina HOM05D003618 ORTHO05D004302 1.9e-198 696.0 463 75.8
MBI10_g14554_MAGBIO Magnolia biondii HOM05D003618 ORTHO05D004302 1.3e-197 693.3 461 77.4
PGSC0003DMG400024503 Solanum tuberosum HOM05D003618 ORTHO05D004302 6.2e-197 691.0 495 73.7
MBI16_g32207_MAGBIO Magnolia biondii HOM05D003618 ORTHO05D004302 1.1e-196 690.3 456 78.1
Lalb_Chr12g0209981 Lupinus albus HOM05D003618 ORTHO05D004302 1.8e-196 689.5 463 73.9
arahy.Tifrunner.gnm1.ann1.5ZTX8H Arachis hypogaea HOM05D003618 ORTHO05D004302 4.0e-196 688.3 466 73.0
Hund09436 Selenicereus undatus HOM05D003618 ORTHO05D004302 5.3e-196 688.0 462 73.2
arahy.Tifrunner.gnm1.ann1.NJJ8BU Arachis hypogaea HOM05D003618 ORTHO05D004302 1.5e-195 686.4 466 72.5
Phvul.010G023000 Phaseolus vulgaris HOM05D003618 ORTHO05D004302 2.2e-194 682.6 447 74.0
Glyma.16G089000 Glycine max HOM05D003618 ORTHO05D004302 4.2e-193 678.3 447 74.3
Aa31sc1732G10 Aethionema arabicum HOM05D003618 ORTHO05D004302 5.1e-191 671.4 337 100.0
Ca_23215_v3 Cicer arietinum L. HOM05D003618 ORTHO05D004302 1.1e-190 670.2 463 73.0
VMungo0331G0859 Vigna mungo HOM05D003618 ORTHO05D004302 1.5e-190 669.8 441 74.1
MBI10_g41914_MAGBIO Magnolia biondii HOM05D003618 ORTHO05D004302 1.9e-190 669.5 461 75.7
Lj3g0025861 Lotus japonicus HOM05D003618 ORTHO05D004302 5.7e-190 667.9 464 72.0
TPR.G31563 Trifolium pratense HOM05D003618 ORTHO05D004302 3.7e-189 665.2 466 72.1
Cpa.g.sc76.64 Carica papaya HOM05D003618 ORTHO05D004302 6.3e-189 664.5 384 86.7
Medtr8g012565 Medicago truncatula HOM05D003618 ORTHO05D004302 1.2e-187 660.2 466 71.9
Mapoly0034s0078 Marchantia polymorpha HOM05D003618 ORTHO05D004302 2.2e-186 656.0 451 71.4
Duzib068G0560 Durio zibethinus HOM05D003618 ORTHO05D004302 1.9e-185 652.9 385 84.4
Mapoly0064s0074 Marchantia polymorpha HOM05D003618 ORTHO05D004302 7.9e-184 647.5 430 72.8
Pp3c24_8730 Physcomitrium patens HOM05D003618 ORTHO05D004302 3.3e-182 642.1 407 77.4
Pp3c8_12290 Physcomitrium patens HOM05D003618 ORTHO05D004302 2.2e-181 639.4 413 76.8
SMO348G0015 Selaginella moellendorffii HOM05D003618 ORTHO05D004302 1.7e-178 629.8 429 70.4
SGA_v2.0_scaffold25G10843 Striga asiatica HOM05D003618 ORTHO05D004302 4.2e-177 625.2 444 72.7
HanXRQChr16g0517311 Helianthus annuus HOM05D003618 ORTHO05D004302 7.2e-177 624.4 466 66.7
CDE06G1773 Ceratophyllum demersum HOM05D003618 ORTHO05D004302 6.1e-176 621.3 465 70.8
CBR_g11924 Chara braunii HOM05D003618 ORTHO05D004302 2.5e-169 599.4 409 69.9
CAN.G781.11 Capsicum annuum HOM05D003618 ORTHO05D004302 9.1e-164 580.9 329 86.6
Cre12.g546050 Chlamydomonas reinhardtii HOM05D003618 ORTHO05D004302 1.2e-163 580.5 420 69.0
Dinv02897 Davidia involucrata HOM05D003618 ORTHO05D004302 1.0e-162 577.4 372 78.5
HanXRQChr05g0156211 Helianthus annuus HOM05D003618 ORTHO05D004302 3.6e-160 568.9 343 81.3
Sabra12G0057700 Salix brachista HOM05D003618 ORTHO05D004302 1.7e-146 523.5 482 62.2
PRCOL_00002139 Prasinoderma coloniale HOM05D003618 ORTHO05D004302 2.9e-146 522.7 425 63.1
Cc00_g09910 Coffea canephora HOM05D003618 ORTHO05D004302 2.9e-133 479.6 307 77.5
MCO15G646 Micromonas commoda HOM05D003618 ORTHO05D004302 1.6e-128 463.8 350 65.7
AagrBONN_evm.TU.Sc2ySwM_228.1199 Anthoceros agrestis HOM05D003618 ORTHO05D004302 1.0e-122 444.5 283 79.2
Sc12g0005340 Simmondsia chinensis HOM05D003618 ORTHO05D004302 3.1e-119 433.0 293 74.1
Psat4g204400 Pisum sativum HOM05D003618 ORTHO05D004302 2.3e-106 390.2 295 68.8
Actinidia33067 Actinidia chinensis HOM05D003618 ORTHO05D004302 7.8e-99 365.2 257 74.7
Zm00001eb334380 Zea mays HOM05D003618 ORTHO05D004302 7.1e-92 342.0 196 84.7
Gohir.D11G000766 Gossypium hirsutum HOM05D003618 ORTHO05D004302 6.2e-88 328.9 188 82.4
Sc12g0005330 Simmondsia chinensis HOM05D003618 ORTHO05D004302 1.1e-81 308.1 185 77.8
FvH4_4g01210 Fragaria vesca HOM05D003618 ORTHO05D004302 4.3e-81 306.2 250 66.4
Zm00001eb334370 Zea mays HOM05D003618 ORTHO05D004302 5.3e-79 299.3 221 72.9
Gohir.D11G000832 Gossypium hirsutum HOM05D003618 ORTHO05D004302 1.4e-71 274.6 213 68.5
Cc04_g14070 Coffea canephora HOM05D003618 ORTHO05D004302 7.4e-65 252.3 225 62.2
Hund09437 Selenicereus undatus HOM05D003618 ORTHO05D004302 2.0e-62 244.2 407 41.8
Lsat_1_v5_gn_0_46101 Lactuca sativa HOM05D003618 ORTHO05D004302 7.9e-59 232.3 367 38.1
VMungo0647G0692 Vigna mungo HOM05D003618 ORTHO05D004302 7.9e-59 232.3 159 76.7
FvH4_3g27741 Fragaria vesca HOM05D003618 ORTHO05D004302 2.0e-57 227.6 133 87.2
FvH4_1g09716 Fragaria vesca HOM05D003618 ORTHO05D004302 8.2e-48 195.7 153 70.6
FvH4_1g09717 Fragaria vesca HOM05D003618 ORTHO05D004302 2.4e-31 141.0 71 93.0
DCAR_016639 Daucus carota HOM05D003618 ORTHO05D003669 3.6e-27 127.1 75 82.7
FAN09G3822 Fragaria x ananassa HOM05D003618 ORTHO05D004302 4.4e-25 120.2 119 53.8
RcHm_v2.0_Chr2g0151191 Rosa chinensis HOM05D001812 ORTHO05D004302 8.6e-21 105.9 73 74.0
RcHm_v2.0_Chr1g0360281 Rosa chinensis HOM05D003618 ORTHO05D004302 1.0e-18 99.0 72 69.4
Hma1.2p1_0549F.1_g176800 Hydrangea macrophylla HOM05D003618 ORTHO05D004302 1.7e-13 81.6 49 85.7
SGA_v2.0_scaffold45G17201 Striga asiatica HOM05D003618 ORTHO05D404764 1.1e-10 72.4 148 41.2
Cc00_g21160 Coffea canephora HOM05D003618 ORTHO05D153345 4.0e-10 70.5 48 70.8
CSS0007150 Camellia sinensis var. sinensis HOM05D003618 ORTHO05D004302 8.9e-10 69.3 57 64.9
CSS0047950 Camellia sinensis var. sinensis HOM05D003618 ORTHO05D004302 8.9e-10 69.3 57 64.9
Cc00_g09880 Coffea canephora HOM05D003618 ORTHO05D004302 1.3e-08 65.5 38 84.2
CSS0042990 Camellia sinensis var. sinensis HOM05D003618 ORTHO05D004302 8.3e-08 62.8 50 68.0
CSS0042870 Camellia sinensis var. sinensis HOM05D003618 ORTHO05D004302 7.0e-07 59.7 48 66.7


User provided reference genes

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