Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG11G7290 Aethionema arabicum HOM05D000435 ORTHO05D010810 2.9e-32 141.4 74 100.0
Aa31LG11G7320 Aethionema arabicum HOM05D000307 ORTHO05D010810 7.3e-20 100.1 153 46.4
Aa31sc336G20 Aethionema arabicum HOM05D000435 ORTHO05D000430 3.1e-18 94.7 67 73.1
Aa31sc336G40 Aethionema arabicum HOM05D000307 ORTHO05D000166 2.0e-17 92.0 154 44.2
Aa31LG11G7330 Aethionema arabicum HOM05D000435 ORTHO05D010810 5.8e-17 90.5 47 100.0
CARHR206670 Cardamine hirsuta HOM05D000435 ORTHO05D000430 2.2e-16 88.6 67 67.2
Sp6g36340 Schrenkiella parvula HOM05D000435 ORTHO05D000430 2.9e-16 88.2 67 67.2
BcaC06g32563 Brassica carinata HOM05D000435 ORTHO05D000430 4.9e-16 87.4 67 67.2
BcaNung05833 Brassica carinata HOM05D000435 ORTHO05D000430 4.9e-16 87.4 67 67.2
Thhalv10012760m.g Eutrema salsugineum HOM05D000435 ORTHO05D000430 4.9e-16 87.4 67 67.2
AL6G16620 Arabidopsis lyrata HOM05D000435 ORTHO05D000430 6.4e-16 87.0 67 65.7
BolC2t06239H Brassica oleracea HOM05D000435 ORTHO05D000430 6.4e-16 87.0 67 67.2
Carub.0006s0541 Capsella rubella HOM05D000435 ORTHO05D000430 6.4e-16 87.0 67 65.7
BcaNung04847 Brassica carinata HOM05D000435 ORTHO05D000430 1.4e-15 85.9 67 65.7
A10p29870 Brassica napus HOM05D000435 ORTHO05D000430 1.4e-15 85.9 67 65.7
C09p70240 Brassica napus HOM05D000435 ORTHO05D000430 1.4e-15 85.9 67 65.7
BolC9t59768H Brassica oleracea HOM05D000435 ORTHO05D000430 1.4e-15 85.9 67 65.7
BcaB05g21665 Brassica carinata HOM05D000435 ORTHO05D000430 1.9e-15 85.5 67 65.7
BcaC03g13164 Brassica carinata HOM05D000435 ORTHO05D000430 2.4e-15 85.1 67 65.7
C02p02740 Brassica napus HOM05D000435 ORTHO05D000430 2.4e-15 85.1 67 65.7
AT5G06530 Arabidopsis thaliana HOM05D000435 ORTHO05D000430 4.2e-15 84.3 67 65.7
THA.LOC104826788 Tarenaya hassleriana HOM05D000435 ORTHO05D000430 9.3e-15 83.2 67 62.7
CiPaw.09G024000 Carya illinoinensis HOM05D000435 ORTHO05D000430 7.4e-12 73.6 64 56.2
Lalb_Chr01g0017721 Lupinus albus HOM05D000435 ORTHO05D000430 7.4e-12 73.6 64 57.8
QL07p026386 Quercus lobata HOM05D000435 ORTHO05D000430 7.4e-12 73.6 63 57.1
Cfa020069 Carpinus fangiana HOM05D000435 ORTHO05D000430 1.3e-11 72.8 62 58.1
Haze_20126 Corylus avellana HOM05D000435 ORTHO05D000430 1.3e-11 72.8 64 56.2
THA.LOC104823509 Tarenaya hassleriana HOM05D000435 ORTHO05D000430 1.3e-11 72.8 66 56.1
Lj1g0010379 Lotus japonicus HOM05D000435 ORTHO05D000430 2.1e-11 72.0 64 54.7
Medtr7g106880 Medicago truncatula HOM05D000435 ORTHO05D000430 2.1e-11 72.0 64 54.7
Cpa.g.sc222.15 Carica papaya HOM05D000435 ORTHO05D000430 2.8e-11 71.6 64 56.2
Ca_11654_v3 Cicer arietinum L. HOM05D000435 ORTHO05D000430 3.7e-11 71.2 66 53.0
Psat6g087200 Pisum sativum HOM05D000435 ORTHO05D000430 4.8e-11 70.9 64 51.6
Eucgr.K01911 Eucalyptus grandis HOM05D000435 ORTHO05D000430 6.2e-11 70.5 61 55.7
Thecc.05G110000 Theobroma cacao HOM05D000435 ORTHO05D000430 6.2e-11 70.5 64 56.2
GSVIVG01022526001 Vitis vinifera HOM05D000435 ORTHO05D000430 6.2e-11 70.5 66 51.5
Potri.006G199500 Populus trichocarpa HOM05D000435 ORTHO05D000430 8.1e-11 70.1 62 56.5
Potri.016G065900 Populus trichocarpa HOM05D000435 ORTHO05D000430 8.1e-11 70.1 65 53.8
Sed0023924 Sechium edule HOM05D000435 ORTHO05D000430 8.1e-11 70.1 51 60.8
TPR.G34448 Trifolium pratense HOM05D000435 ORTHO05D000430 8.1e-11 70.1 64 53.1
TWI53G1860 Tripterygium wilfordii HOM05D000435 ORTHO05D000430 8.1e-11 70.1 62 56.5
Glyma.02G188300 Glycine max HOM05D000435 ORTHO05D000430 1.1e-10 69.7 62 54.8
PGR142G3890 Punica granatum HOM05D000435 ORTHO05D000430 1.1e-10 69.7 62 54.8
Ciclev10011143m.g Citrus clementina HOM05D000435 ORTHO05D000430 1.4e-10 69.3 64 53.1
CiPaw.11G082100 Carya illinoinensis HOM05D000435 ORTHO05D000430 1.8e-10 68.9 64 53.1
Psat3g027640 Pisum sativum HOM05D000435 ORTHO05D000430 1.8e-10 68.9 63 52.4
TPR.G21233 Trifolium pratense HOM05D000435 ORTHO05D000430 1.8e-10 68.9 64 51.6
Atru.chr8.1286 Acer truncatum HOM05D000435 ORTHO05D000430 2.4e-10 68.6 64 53.1
arahy.Tifrunner.gnm1.ann1.810EMS Arachis hypogaea HOM05D000435 ORTHO05D000430 2.4e-10 68.6 64 50.0
arahy.Tifrunner.gnm1.ann1.NEY80F Arachis hypogaea HOM05D000435 ORTHO05D000430 2.4e-10 68.6 64 50.0
DCAR_013460 Daucus carota HOM05D000435 ORTHO05D000430 2.4e-10 68.6 51 60.8
Duzib128G1358 Durio zibethinus HOM05D000435 ORTHO05D000430 2.4e-10 68.6 64 54.7
Lj5g0020894 Lotus japonicus HOM05D000435 ORTHO05D000430 2.4e-10 68.6 64 50.0
Medtr1g054935 Medicago truncatula HOM05D000435 ORTHO05D000430 2.4e-10 68.6 64 50.0
Medtr1g054960 Medicago truncatula HOM05D000435 ORTHO05D000430 2.4e-10 68.6 64 50.0
TAR633G1978 Trochodendron aralioides HOM05D000435 ORTHO05D000430 2.4e-10 68.6 64 51.6
Glyma.10G086800 Glycine max HOM05D000435 ORTHO05D000430 3.1e-10 68.2 62 53.2
Phvul.007G265300 Phaseolus vulgaris HOM05D000435 ORTHO05D000430 3.1e-10 68.2 62 53.2
VMungo0720G1776 Vigna mungo HOM05D000435 ORTHO05D000430 3.1e-10 68.2 62 53.2
COL.COLO4_29496 Corchorus olitorius HOM05D000435 ORTHO05D000430 4.0e-10 67.8 64 53.1
Gohir.A01G199700 Gossypium hirsutum HOM05D000435 ORTHO05D000430 4.0e-10 67.8 64 51.6
Gohir.D01G189700 Gossypium hirsutum HOM05D000435 ORTHO05D000430 4.0e-10 67.8 64 51.6
Gorai.002G233500 Gossypium raimondii HOM05D000435 ORTHO05D000430 4.0e-10 67.8 64 51.6
TWI74G0089 Tripterygium wilfordii HOM05D000435 ORTHO05D000430 4.0e-10 67.8 62 54.8
VMungo1383G2447 Vigna mungo HOM05D000435 ORTHO05D000430 4.0e-10 67.8 64 50.0
Thhalv10010138m.g Eutrema salsugineum HOM05D000435 ORTHO05D000430 5.3e-10 67.4 64 51.6
Glyma.03G204800 Glycine max HOM05D000435 ORTHO05D000430 5.3e-10 67.4 64 51.6
Lalb_Chr02g0154221 Lupinus albus HOM05D000435 ORTHO05D000430 5.3e-10 67.4 64 51.6
DCAR_016908 Daucus carota HOM05D000435 ORTHO05D000430 6.9e-10 67.0 64 50.0
CARHR162080 Cardamine hirsuta HOM05D000435 ORTHO05D000430 9.0e-10 66.6 64 50.0
ECA248G3236 Erigeron canadensis HOM05D000435 ORTHO05D000430 9.0e-10 66.6 65 49.2
Glyma.19G202200 Glycine max HOM05D000435 ORTHO05D000430 9.0e-10 66.6 64 51.6
Phvul.001G198400 Phaseolus vulgaris HOM05D000435 ORTHO05D000430 9.0e-10 66.6 64 48.4
AL5G32940 Arabidopsis lyrata HOM05D000435 ORTHO05D000430 1.2e-09 66.2 64 50.0
HanXRQChr01g0026181 Helianthus annuus HOM05D000435 ORTHO05D000430 1.2e-09 66.2 65 47.7
Sp5g09950 Schrenkiella parvula HOM05D000435 ORTHO05D000430 1.2e-09 66.2 66 51.5
BolC4t25650H Brassica oleracea HOM05D000435 ORTHO05D000430 1.5e-09 65.9 66 51.5
Gohir.D09G128400 Gossypium hirsutum HOM05D000435 ORTHO05D000430 1.5e-09 65.9 64 51.6
Gorai.006G147000 Gossypium raimondii HOM05D000435 ORTHO05D000430 1.5e-09 65.9 64 51.6
Nn6g34589 Nelumbo nucifera HOM05D000435 ORTHO05D000430 2.0e-09 65.5 64 50.0
Rhsim03G0058600 Rhododendron simsii HOM05D000435 ORTHO05D000430 2.0e-09 65.5 64 50.0
SGA_v2.0_scaffold41G15770 Striga asiatica HOM05D000435 ORTHO05D000430 2.0e-09 65.5 51 58.8
Carub.0005s1867 Capsella rubella HOM05D000435 ORTHO05D000430 2.6e-09 65.1 64 50.0
ClCG10G017980 Citrullus lanatus HOM05D000435 ORTHO05D000430 2.6e-09 65.1 62 46.8
MELO3C009572.2 Cucumis melo HOM05D000435 ORTHO05D000430 2.6e-09 65.1 62 46.8
CsaV3_3G038310 Cucumis sativus L. HOM05D000435 ORTHO05D000430 3.4e-09 64.7 62 46.8
HanXRQChr11g0347601 Helianthus annuus HOM05D000435 ORTHO05D000430 3.4e-09 64.7 64 48.4
Gohir.A01G135900 Gossypium hirsutum HOM05D000435 ORTHO05D000430 4.5e-09 64.3 64 51.6
Gohir.D01G123000 Gossypium hirsutum HOM05D000435 ORTHO05D000430 4.5e-09 64.3 64 51.6
Gorai.002G153900 Gossypium raimondii HOM05D000435 ORTHO05D000430 4.5e-09 64.3 64 51.6
MBI11_g26201_MAGBIO Magnolia biondii HOM05D000435 ORTHO05D000430 4.5e-09 64.3 64 50.0
Sabra06G0153400 Salix brachista HOM05D000435 ORTHO05D000430 4.5e-09 64.3 62 51.6
CSS0017249 Camellia sinensis var. sinensis HOM05D000435 ORTHO05D000430 5.8e-09 63.9 64 50.0
CSS0022571 Camellia sinensis var. sinensis HOM05D000435 ORTHO05D000430 5.8e-09 63.9 64 50.0
CSS0024033 Camellia sinensis var. sinensis HOM05D000435 ORTHO05D000430 5.8e-09 63.9 64 50.0
CSS0028515 Camellia sinensis var. sinensis HOM05D000435 ORTHO05D000430 5.8e-09 63.9 64 50.0
Actinidia37777 Actinidia chinensis HOM05D000435 ORTHO05D000430 7.6e-09 63.5 64 48.4
Dinv11897 Davidia involucrata HOM05D000435 ORTHO05D000430 7.6e-09 63.5 63 54.0
Gohir.A09G132100 Gossypium hirsutum HOM05D000435 ORTHO05D000430 7.6e-09 63.5 64 50.0
Actinidia03854 Actinidia chinensis HOM05D000435 ORTHO05D000430 1.0e-08 63.2 63 49.2
Actinidia03964 Actinidia chinensis HOM05D000435 ORTHO05D000430 1.0e-08 63.2 63 49.2
MSTRG.10412 Avicennia marina HOM05D000435 ORTHO05D000430 1.0e-08 63.2 64 50.0
MD14G1044500 Malus domestica HOM05D000435 ORTHO05D000430 1.0e-08 63.2 64 46.9
Sed0005222 Sechium edule HOM05D000435 ORTHO05D000430 1.0e-08 63.2 62 48.4
Oeu045027.1 Olea europaea HOM05D000435 ORTHO05D000430 1.3e-08 62.8 64 48.4
Sc01g0005640 Simmondsia chinensis HOM05D000435 ORTHO05D000430 1.3e-08 62.8 64 46.9
vmacro07511 Vaccinium macrocarpon HOM05D000435 ORTHO05D000430 1.3e-08 62.8 64 45.3
ATR0697G229 Amborella trichopoda HOM05D000435 ORTHO05D000430 1.7e-08 62.4 64 42.2
CANSAT64G1430 Cannabis sativa HOM05D000435 ORTHO05D000430 1.7e-08 62.4 64 46.9
Migut.L01842 Erythranthe guttata HOM05D000435 ORTHO05D000430 1.7e-08 62.4 64 48.4
Aa31LG10G7400 Aethionema arabicum HOM05D000435 ORTHO05D000430 2.2e-08 62.0 66 47.0
Lsat_1_v5_gn_1_56901 Lactuca sativa HOM05D000435 ORTHO05D000430 2.2e-08 62.0 64 43.8
MD12G1045900 Malus domestica HOM05D000435 ORTHO05D000430 2.2e-08 62.0 64 45.3
Manes.08G037200 Manihot esculenta HOM05D000435 ORTHO05D000430 2.2e-08 62.0 62 51.6
Oeu020157.1 Olea europaea HOM05D000435 ORTHO05D000430 2.2e-08 62.0 64 46.9
Prupe.7G089500 Prunus persica HOM05D000435 ORTHO05D000430 2.2e-08 62.0 64 48.4
arahy.Tifrunner.gnm1.ann1.T4ZW2M Arachis hypogaea HOM05D000435 ORTHO05D000430 3.8e-08 61.2 65 50.8
DCAR_020679 Daucus carota HOM05D000435 ORTHO05D000430 3.8e-08 61.2 64 45.3
Cc06_g06960 Coffea canephora HOM05D000435 ORTHO05D000430 4.9e-08 60.8 64 46.9
PSO339G0312 Papaver somniferum HOM05D000435 ORTHO05D000430 4.9e-08 60.8 61 47.5
RcHm_v2.0_Chr3g0477391 Rosa chinensis HOM05D000435 ORTHO05D000430 4.9e-08 60.8 64 48.4
BcaB02g08578 Brassica carinata HOM05D000435 ORTHO05D000430 6.5e-08 60.5 64 48.4
AUR62038429 Chenopodium quinoa HOM05D000435 ORTHO05D000430 1.1e-07 59.7 64 43.8
FvH4_6g21010 Fragaria vesca HOM05D000435 ORTHO05D000430 1.4e-07 59.3 64 46.9
FAN02G3368 Fragaria x ananassa HOM05D000435 ORTHO05D000430 1.4e-07 59.3 64 46.9
FAN05G2031 Fragaria x ananassa HOM05D000435 ORTHO05D000430 1.4e-07 59.3 64 46.9
FAN05G4339 Fragaria x ananassa HOM05D000435 ORTHO05D000430 1.4e-07 59.3 64 46.9
FAN09G4773 Fragaria x ananassa HOM05D000435 ORTHO05D000430 1.4e-07 59.3 64 46.9
FAN14G0489 Fragaria x ananassa HOM05D000435 ORTHO05D000430 1.4e-07 59.3 64 46.9
AUR62036323 Chenopodium quinoa HOM05D000435 ORTHO05D000430 1.9e-07 58.9 64 43.8
Nitab4.5_0000429g0030 Nicotiana tabacum HOM05D000435 ORTHO05D000430 3.2e-07 58.2 64 42.2
Nitab4.5_0002599g0030 Nicotiana tabacum HOM05D000435 ORTHO05D000430 3.2e-07 58.2 64 42.2
Hund10796 Selenicereus undatus HOM05D000435 ORTHO05D000430 3.2e-07 58.2 64 40.6
CAN.G388.50 Capsicum annuum HOM05D000435 ORTHO05D000430 7.1e-07 57.0 64 40.6
Solyc01g006720.4 Solanum lycopersicum HOM05D000435 ORTHO05D000430 7.1e-07 57.0 64 40.6
Sopen01g002710 Solanum pennellii HOM05D000435 ORTHO05D000430 7.1e-07 57.0 64 40.6
Ah.12g059590 Amaranthus hybridus HOM05D000435 ORTHO05D000430 9.3e-07 56.6 64 42.2
EL10Ac5g11808 Beta vulgaris HOM05D000435 ORTHO05D000430 9.3e-07 56.6 64 43.8
Peaxi162Scf00210g01615 Petunia axillaris HOM05D000435 ORTHO05D000430 9.3e-07 56.6 64 40.6
PGSC0003DMG400021343 Solanum tuberosum HOM05D000435 ORTHO05D000430 9.3e-07 56.6 64 40.6
Hund15011 Selenicereus undatus HOM05D000435 ORTHO05D000430 1.2e-06 56.2 51 47.1
unitig_578.g16480 Utricularia gibba HOM05D000435 ORTHO05D000430 7.9e-06 53.5 64 40.6


User provided reference genes

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