Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG11G5940 Aethionema arabicum HOM05D010535 ORTHO05D005895 2.6e-308 1061.2 539 100.0
Aa31LG11G5970 Aethionema arabicum HOM05D010535 ORTHO05D005895 1.6e-193 679.9 510 76.1
AL8G32790 Arabidopsis lyrata HOM05D010535 ORTHO05D005895 1.7e-118 430.6 570 51.4
Sp6g18630 Schrenkiella parvula HOM05D010535 ORTHO05D005895 1.7e-118 430.6 580 49.7
AT5G56930 Arabidopsis thaliana HOM05D010535 ORTHO05D005895 1.9e-117 427.2 572 49.7
Thhalv10012834m.g Eutrema salsugineum HOM05D010535 ORTHO05D005895 3.5e-111 406.4 565 48.8
Carub.0008s1741 Capsella rubella HOM05D010535 ORTHO05D005895 1.7e-102 377.5 562 48.4
BcaC03g14196 Brassica carinata HOM05D010535 ORTHO05D005895 1.1e-91 341.7 578 44.8
C02p14780 Brassica napus HOM05D010535 ORTHO05D005895 1.1e-91 341.7 578 44.8
BolC2t07607H Brassica oleracea HOM05D010535 ORTHO05D005895 1.1e-91 341.7 578 44.8
AL52U10020 Arabidopsis lyrata HOM05D010535 ORTHO05D005895 2.0e-90 337.4 569 45.0
BraA02t05956Z Brassica rapa HOM05D010535 ORTHO05D005895 1.3e-86 324.7 573 43.6
A02p08870 Brassica napus HOM05D010535 ORTHO05D005895 1.1e-83 315.1 563 42.5
CARHR270670 Cardamine hirsuta HOM05D010535 ORTHO05D005895 2.6e-82 310.5 568 43.1
BcaB05g22299 Brassica carinata HOM05D010535 ORTHO05D005895 1.4e-64 251.5 413 43.8
Aa31LG11G5930 Aethionema arabicum HOM05D010535 ORTHO05D005895 1.8e-54 218.0 189 65.6
Sc08g0008560 Simmondsia chinensis HOM05D006920 ORTHO05D005895 4.5e-18 97.1 196 38.8
RcHm_v2.0_Chr2g0093651 Rosa chinensis HOM05D006920 ORTHO05D005895 1.5e-16 92.0 125 45.6
RcHm_v2.0_Chr3g0459471 Rosa chinensis HOM05D006920 ORTHO05D005895 3.2e-16 90.9 125 44.8
COL.COLO4_18185 Corchorus olitorius HOM05D006920 ORTHO05D005895 9.4e-16 89.4 638 24.8
Duzib150G1610 Durio zibethinus HOM05D006920 ORTHO05D005895 2.7e-15 87.8 615 25.5
Cc06_g11560 Coffea canephora HOM05D006920 ORTHO05D005895 1.4e-14 85.5 200 36.0
Oeu000320.3 Olea europaea HOM05D006920 ORTHO05D005895 3.0e-14 84.3 225 33.8
HanXRQChr14g0436791 Helianthus annuus HOM05D006920 ORTHO05D005895 5.2e-14 83.6 85 45.9
PGSC0003DMG400014565 Solanum tuberosum HOM05D006920 ORTHO05D005895 5.2e-14 83.6 253 33.6
FAN19G0513 Fragaria x ananassa HOM05D006920 ORTHO05D005895 4.4e-13 80.5 141 39.7
Nitab4.5_0008077g0010 Nicotiana tabacum HOM05D006920 ORTHO05D005895 1.8e-11 75.1 181 34.8
Nitab4.5_0005104g0050 Nicotiana tabacum HOM05D006920 ORTHO05D005895 2.4e-11 74.7 181 34.8
PSO063G3291 Papaver somniferum HOM05D006920 ORTHO05D005895 3.1e-11 74.3 124 38.7
ATR0178G033 Amborella trichopoda HOM05D006920 ORTHO05D005895 4.1e-11 73.9 125 37.6
DCAR_015050 Daucus carota HOM05D006920 ORTHO05D005895 4.1e-11 73.9 165 33.9
Thecc.09G086800 Theobroma cacao HOM05D006920 ORTHO05D005895 4.1e-11 73.9 672 24.7
HPP92_005499 Vanilla planifolia HOM05D006920 ORTHO05D005895 4.1e-11 73.9 262 28.6
arahy.Tifrunner.gnm1.ann1.50MPSE Arachis hypogaea HOM05D006920 ORTHO05D005895 5.4e-11 73.6 474 24.9
Dinv42334 Davidia involucrata HOM05D006920 ORTHO05D005895 1.6e-10 72.0 196 34.7
DCAR_031337 Daucus carota HOM05D006920 ORTHO05D005895 2.0e-10 71.6 125 36.8
MD15G1209300 Malus domestica HOM05D006920 ORTHO05D005895 2.0e-10 71.6 215 29.3
Dinv36779 Davidia involucrata HOM05D006920 ORTHO05D005895 3.5e-10 70.9 428 26.2
TPR.G14423 Trifolium pratense HOM05D006920 ORTHO05D005895 5.9e-10 70.1 456 24.8
PSO384G1468 Papaver somniferum HOM05D006920 ORTHO05D005895 1.3e-09 68.9 124 38.7
MSTRG.19500 Avicennia marina HOM05D006920 ORTHO05D005895 1.7e-09 68.6 127 37.8
Glyma.18G092000 Glycine max HOM05D006920 ORTHO05D005895 1.7e-09 68.6 100 40.0
ECA233G4205 Erigeron canadensis HOM05D006920 ORTHO05D005895 2.9e-09 67.8 125 39.2
AUR62033943 Chenopodium quinoa HOM05D036879 ORTHO05D005895 3.8e-09 67.4 155 31.0
Peaxi162Scf00028g00415 Petunia axillaris HOM05D006920 ORTHO05D005895 3.8e-09 67.4 200 32.5
TWI63G0676 Tripterygium wilfordii HOM05D006920 ORTHO05D005895 5.0e-09 67.0 171 36.3
Hma1.2p1_3164F.1_g333530 Hydrangea macrophylla HOM05D006920 ORTHO05D005895 8.6e-09 66.2 38 65.8
Lsat_1_v5_gn_7_36681 Lactuca sativa HOM05D006920 ORTHO05D005895 1.5e-08 65.5 468 22.4
SalBow6G1737 Salvia bowleyana HOM05D006920 ORTHO05D005895 1.5e-08 65.5 138 35.5
SGA_v2.0_scaffold4G02308 Striga asiatica HOM05D006920 ORTHO05D005895 1.5e-08 65.5 208 30.3
FvH4_1g07770 Fragaria vesca HOM05D006920 ORTHO05D005895 2.5e-08 64.7 131 36.6
Hma1.2p1_1540F.1_g289660 Hydrangea macrophylla HOM05D006920 ORTHO05D005895 2.5e-08 64.7 144 31.9
Eucgr.C01628 Eucalyptus grandis HOM05D006920 ORTHO05D005895 3.3e-08 64.3 37 64.9
MELO3C010521.2 Cucumis melo HOM05D006920 ORTHO05D005895 7.2e-08 63.2 134 37.3
arahy.Tifrunner.gnm1.ann1.IGMF9F Arachis hypogaea HOM05D006920 ORTHO05D005895 9.5e-08 62.8 346 23.4
Phvul.010G094400 Phaseolus vulgaris HOM05D006920 ORTHO05D005895 9.5e-08 62.8 452 24.6
Ca_12179_v3 Cicer arietinum L. HOM05D006920 ORTHO05D005895 1.2e-07 62.4 34 67.6
Hund06669 Selenicereus undatus HOM05D006920 ORTHO05D005895 1.2e-07 62.4 173 30.1
Hma1.2p1_0169F.1_g074930 Hydrangea macrophylla HOM05D006920 ORTHO05D005895 2.1e-07 61.6 225 30.2
HanXRQChr10g0310341 Helianthus annuus HOM05D001214 ORTHO05D001029 2.8e-07 61.2 125 35.2
Sopen05g005130 Solanum pennellii HOM05D006920 ORTHO05D005895 2.8e-07 61.2 254 30.7
arahy.Tifrunner.gnm1.ann1.6V6YZC Arachis hypogaea HOM05D006920 ORTHO05D005895 3.6e-07 60.8 62 45.2
Gorai.009G032200 Gossypium raimondii HOM05D006920 ORTHO05D005895 3.6e-07 60.8 266 28.6
Gohir.A05G030600 Gossypium hirsutum HOM05D006920 ORTHO05D005895 4.7e-07 60.5 255 29.0
Actinidia25244 Actinidia chinensis HOM05D006920 ORTHO05D005895 6.1e-07 60.1 137 33.6
Gohir.A10G064850 Gossypium hirsutum HOM05D006920 ORTHO05D005895 1.0e-06 59.3 353 24.9
PGR142G4106 Punica granatum HOM05D006920 ORTHO05D005895 1.0e-06 59.3 154 29.9
PSO832G2112 Papaver somniferum HOM05D006920 ORTHO05D005895 1.8e-06 58.5 239 26.4
Sed0019505 Sechium edule HOM05D006920 ORTHO05D005895 2.3e-06 58.2 195 29.7
ClCG11G016050 Citrullus lanatus HOM05D006920 ORTHO05D005895 3.0e-06 57.8 161 31.7
Gohir.D05G032000 Gossypium hirsutum HOM05D006920 ORTHO05D005895 3.0e-06 57.8 261 28.0
Nn6g35509 Nelumbo nucifera HOM05D006920 ORTHO05D005895 3.0e-06 57.8 166 29.5
unitig_699.g19418 Utricularia gibba HOM05D006920 ORTHO05D005895 3.0e-06 57.8 156 32.1
arahy.Tifrunner.gnm1.ann1.J1TK4W Arachis hypogaea HOM05D006920 ORTHO05D005895 4.0e-06 57.4 54 48.1
CsaV3_4G027920 Cucumis sativus L. HOM05D006920 ORTHO05D005895 5.2e-06 57.0 184 29.3
VMungo0331G1985 Vigna mungo HOM05D006920 ORTHO05D005895 5.2e-06 57.0 451 23.9
Rhsim05G0018400 Rhododendron simsii HOM05D006920 ORTHO05D005895 6.8e-06 56.6 126 33.3


User provided reference genes

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