Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG11G3970 Aethionema arabicum HOM05D004333 ORTHO05D005363 0.0e+00 2407.1 1195 100.0
Aa31LG11G3630 Aethionema arabicum HOM05D004333 ORTHO05D005363 0.0e+00 1817.7 1010 90.4
AL6G35880 Arabidopsis lyrata HOM05D004333 ORTHO05D005363 0.0e+00 1621.7 1011 78.8
AT5G24350 Arabidopsis thaliana HOM05D004333 ORTHO05D005363 0.0e+00 1621.7 1011 78.9
CARHR189090 Cardamine hirsuta HOM05D004333 ORTHO05D005363 0.0e+00 1608.6 1011 78.8
Sp2g22970 Schrenkiella parvula HOM05D004333 ORTHO05D005363 0.0e+00 1600.1 1011 78.7
Thhalv10003502m.g Eutrema salsugineum HOM05D004333 ORTHO05D005363 0.0e+00 1599.7 1011 78.7
A06p35170 Brassica napus HOM05D004333 ORTHO05D005363 0.0e+00 1589.3 1012 78.1
BcaNung01227 Brassica carinata HOM05D004333 ORTHO05D005363 0.0e+00 1588.2 1012 77.9
C07p43390 Brassica napus HOM05D004333 ORTHO05D005363 0.0e+00 1578.9 1012 77.9
BraA06t26437Z Brassica rapa HOM05D004333 ORTHO05D005363 0.0e+00 1563.5 1035 75.7
BolC7t44866H Brassica oleracea HOM05D004333 ORTHO05D005363 0.0e+00 1560.0 1039 75.7
THA.LOC104798907 Tarenaya hassleriana HOM05D004333 ORTHO05D005363 0.0e+00 1451.4 1011 71.6
Carub.0006s2217 Capsella rubella HOM05D004333 ORTHO05D005363 0.0e+00 1239.9 762 79.3
Thecc.03G204400 Theobroma cacao HOM05D004333 ORTHO05D005363 0.0e+00 1152.1 1042 55.9
Atru.chr12.2311 Acer truncatum HOM05D004333 ORTHO05D005363 0.0e+00 1112.1 1046 54.6
Dinv32109 Davidia involucrata HOM05D004333 ORTHO05D005363 0.0e+00 1110.9 1042 54.5
Gorai.008G266500 Gossypium raimondii HOM05D004333 ORTHO05D005363 0.0e+00 1106.7 1045 54.9
Gohir.D12G248500 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 1104.0 1045 54.9
TWI39G1232 Tripterygium wilfordii HOM05D004333 ORTHO05D005363 0.0e+00 1099.7 1037 54.8
TAR633G0098 Trochodendron aralioides HOM05D004333 ORTHO05D005363 0.0e+00 1094.7 1045 53.0
Gohir.A12G247800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 1093.6 1052 54.2
Manes.01G037200 Manihot esculenta HOM05D004333 ORTHO05D005363 0.0e+00 1091.6 1049 53.9
Prupe.2G315300 Prunus persica HOM05D004333 ORTHO05D005363 0.0e+00 1083.6 1031 53.8
QL11p010725 Quercus lobata HOM05D004333 ORTHO05D005363 0.0e+00 1080.9 1051 53.1
MD07G1295800 Malus domestica HOM05D004333 ORTHO05D005363 0.0e+00 1078.9 1029 53.7
Actinidia08674 Actinidia chinensis HOM05D004333 ORTHO05D005363 0.0e+00 1077.4 1039 52.9
Sabra15G0006500 Salix brachista HOM05D004333 ORTHO05D005363 2.5e-311 1072.4 1040 53.7
Sabra12G0012900 Salix brachista HOM05D004333 ORTHO05D005363 9.8e-311 1070.5 1027 53.4
Gorai.006G202800 Gossypium raimondii HOM05D004333 ORTHO05D005363 1.2e-310 1070.1 1038 53.6
CiPaw.05G200800 Carya illinoinensis HOM05D004333 ORTHO05D005363 1.4e-309 1066.6 1051 52.2
MD01G1225300 Malus domestica HOM05D004333 ORTHO05D005363 1.8e-309 1066.2 1035 53.6
Gohir.A09G185800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 8.9e-309 1063.9 1039 53.7
Potri.012G020000 Populus trichocarpa HOM05D004333 ORTHO05D005363 2.6e-308 1062.4 1036 53.3
Haze_00260 Corylus avellana HOM05D004333 ORTHO05D005363 7.6e-308 1060.8 1070 52.1
Potri.015G008500 Populus trichocarpa HOM05D004333 ORTHO05D005363 4.9e-307 1058.1 1038 52.9
Cfa016195 Carpinus fangiana HOM05D004333 ORTHO05D005363 5.4e-306 1054.7 1026 53.2
RcHm_v2.0_Chr1g0381961 Rosa chinensis HOM05D004333 ORTHO05D005363 1.0e-304 1050.4 1032 51.6
FvH4_7g32380 Fragaria vesca HOM05D004333 ORTHO05D005363 7.3e-303 1044.3 1038 50.4
CANSAT21G1061 Cannabis sativa HOM05D004333 ORTHO05D005363 3.1e-301 1038.9 1042 52.2
FAN06G4186 Fragaria x ananassa HOM05D004333 ORTHO05D005363 9.9e-300 1033.9 1072 48.9
Lj1C1024G7 Lonicera japonica HOM05D004333 ORTHO05D005363 2.9e-299 1032.3 1065 51.1
FAN01G1860 Fragaria x ananassa HOM05D004333 ORTHO05D005363 4.2e-298 1028.5 1072 48.6
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 5.4e-298 1028.1 1072 48.6
FAN03G1314 Fragaria x ananassa HOM05D004333 ORTHO05D005363 2.7e-297 1025.8 1072 48.6
FAN10G1078 Fragaria x ananassa HOM05D004333 ORTHO05D005363 1.5e-295 1020.0 1072 48.3
Nn7g38041 Nelumbo nucifera HOM05D004333 ORTHO05D005363 4.8e-294 1015.0 1027 50.6
Sopen03g022440 Solanum pennellii HOM05D004333 ORTHO05D005363 3.1e-293 1012.3 1035 50.8
FAN10G0319 Fragaria x ananassa HOM05D004333 ORTHO05D005363 4.0e-293 1011.9 1072 48.0
Cc02_g01170 Coffea canephora HOM05D004333 ORTHO05D005363 4.5e-292 1008.4 1026 50.8
Ciclev10000006m.g Citrus clementina HOM05D004333 ORTHO05D005363 6.0e-289 998.0 1041 50.2
SGA_v2.0_scaffold18G08437 Striga asiatica HOM05D004333 ORTHO05D005363 1.0e-288 997.3 1046 49.3
ClCG03G011440 Citrullus lanatus HOM05D004333 ORTHO05D005363 1.8e-288 996.5 1049 50.4
Migut.F00177 Erythranthe guttata HOM05D004333 ORTHO05D005363 2.3e-288 996.1 1029 49.6
Lsat_1_v5_gn_9_49400 Lactuca sativa HOM05D004333 ORTHO05D005363 2.5e-287 992.6 1004 50.4
PSO063G3257 Papaver somniferum HOM05D004333 ORTHO05D005363 7.4e-287 991.1 1024 50.6
MELO3C010103.2 Cucumis melo HOM05D004333 ORTHO05D005363 4.0e-285 985.3 1041 50.0
HanXRQChr04g0107121 Helianthus annuus HOM05D004333 ORTHO05D005363 5.3e-285 984.9 1019 50.0
CsaV3_1G044960 Cucumis sativus L. HOM05D004333 ORTHO05D005363 6.9e-285 984.6 1041 50.2
Lalb_Chr08g0240011 Lupinus albus HOM05D004333 ORTHO05D005363 6.9e-285 984.6 1049 50.5
DCAR_020346 Daucus carota HOM05D004333 ORTHO05D005363 1.5e-284 983.4 981 52.0
Lj1g0003347 Lotus japonicus HOM05D004333 ORTHO05D005363 4.5e-284 981.9 1034 50.1
Ca_16734_v3 Cicer arietinum L. HOM05D004333 ORTHO05D005363 7.6e-284 981.1 1027 50.2
TPR.G33633 Trifolium pratense HOM05D004333 ORTHO05D005363 3.2e-282 975.7 1035 49.8
Glyma.04G232700 Glycine max HOM05D004333 ORTHO05D005363 1.6e-281 973.4 1003 50.6
Glyma.06G132300 Glycine max HOM05D004333 ORTHO05D005363 2.1e-281 973.0 1030 50.4
Sed0018682 Sechium edule HOM05D004333 ORTHO05D005363 2.7e-281 972.6 1036 49.3
Medtr3g091940 Medicago truncatula HOM05D004333 ORTHO05D005363 1.0e-280 970.7 1032 49.3
arahy.Tifrunner.gnm1.ann1.F5KWPZ Arachis hypogaea HOM05D004333 ORTHO05D005363 1.3e-280 970.3 1044 49.3
Peaxi162Scf00740g00426 Petunia axillaris HOM05D004333 ORTHO05D005363 3.9e-280 968.8 1040 49.4
vmacro06413 Vaccinium macrocarpon HOM05D004333 ORTHO05D005363 8.7e-280 967.6 973 51.0
MSTRG.27005 Avicennia marina HOM05D004333 ORTHO05D005363 9.6e-279 964.1 1031 48.5
Phvul.009G048100 Phaseolus vulgaris HOM05D004333 ORTHO05D005363 1.6e-278 963.4 1041 49.5
Psat5g074840 Pisum sativum HOM05D004333 ORTHO05D005363 3.7e-278 962.2 1053 48.8
MBI06_g06689_MAGBIO Magnolia biondii HOM05D004333 ORTHO05D005363 4.8e-278 961.8 1029 49.8
Nitab4.5_0008197g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 1.1e-277 960.7 1045 50.0
AUR62010404 Chenopodium quinoa HOM05D004333 ORTHO05D005363 1.2e-276 957.2 1028 47.6
AUR62016813 Chenopodium quinoa HOM05D004333 ORTHO05D005363 5.8e-276 954.9 1028 47.8
arahy.Tifrunner.gnm1.ann1.SMAV3X Arachis hypogaea HOM05D004333 ORTHO05D005363 1.3e-275 953.7 1080 47.1
Nitab4.5_0010367g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 2.9e-275 952.6 995 50.7
PGR142G3828 Punica granatum HOM05D004333 ORTHO05D005363 3.8e-275 952.2 1024 48.7
Aqoxy5G04259 Aquilegia oxysepala HOM05D004333 ORTHO05D005363 4.9e-275 951.8 1045 47.5
Sc19g0000760 Simmondsia chinensis HOM05D004333 ORTHO05D005363 1.9e-274 949.9 1028 48.3
Hund21026 Selenicereus undatus HOM05D004333 ORTHO05D005363 3.9e-272 942.2 1028 48.0
Rhsim03G0212200 Rhododendron simsii HOM05D004333 ORTHO05D005363 1.9e-271 939.9 1041 47.7
EL10Ac9g21652 Beta vulgaris HOM05D004333 ORTHO05D005363 5.7e-271 938.3 1021 47.8
GSVIVG01038603001 Vitis vinifera HOM05D004333 ORTHO05D005363 8.5e-267 924.5 1173 44.2
CAN.G481.56 Capsicum annuum HOM05D004333 ORTHO05D005363 8.7e-264 914.4 988 49.0
Ah.01g018970 Amaranthus hybridus HOM05D004333 ORTHO05D005363 3.3e-263 912.5 1028 46.4
Eucgr.D00250 Eucalyptus grandis HOM05D004333 ORTHO05D005363 2.1e-257 893.3 1018 47.2
ECA232G2446 Erigeron canadensis HOM05D004333 ORTHO05D005363 6.1e-241 838.6 1012 45.4
CDE02G3740 Ceratophyllum demersum HOM05D004333 ORTHO05D005363 1.7e-235 820.5 1039 42.9
Zm00001eb359130 Zea mays HOM05D004333 ORTHO05D005363 1.2e-220 771.2 1095 40.8
ATR0697G293 Amborella trichopoda HOM05D004333 ORTHO05D005363 1.9e-218 763.8 1002 43.0
VMungo1309G1648 Vigna mungo HOM05D004333 ORTHO05D005363 2.3e-216 756.9 908 46.4
Gohir.D09G180800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 9.8e-207 724.9 671 54.8
Duzib068G0008 Durio zibethinus HOM05D004333 ORTHO05D005363 1.2e-204 718.0 1034 41.0
HPP92_002817 Vanilla planifolia HOM05D004333 ORTHO05D005363 4.3e-202 709.5 1030 38.3
COL.COLO4_16822 Corchorus olitorius HOM05D004333 ORTHO05D005363 1.9e-181 641.0 1013 39.1
CSS0015753 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 5.6e-178 629.4 651 50.4
CSS0025528 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 3.6e-177 626.7 662 49.5
unitig_0.g2452 Utricularia gibba HOM05D004333 ORTHO05D005363 3.9e-163 580.1 901 38.2
Oeu001936.1 Olea europaea HOM05D004333 ORTHO05D005363 5.5e-149 533.1 584 47.4
Psat0s2221g0080 Pisum sativum HOM05D004333 ORTHO05D005363 2.3e-147 527.7 688 43.0
SalBow4G2088 Salvia bowleyana HOM05D004333 ORTHO05D005363 2.0e-135 488.0 531 47.8
AagrBONN_evm.TU.Sc2ySwM_362.1567 Anthoceros agrestis HOM05D004333 ORTHO05D005363 7.0e-128 463.0 1044 31.0
Mapoly0143s0007 Marchantia polymorpha HOM05D004333 ORTHO05D005363 3.6e-108 397.5 665 37.0
CBR_g48777 Chara braunii HOM05D004333 ORTHO05D005363 1.8e-104 385.2 1157 27.1
Actinidia34248 Actinidia chinensis HOM05D004333 ORTHO05D005363 1.2e-103 382.5 410 48.5
SMO356G0059 Selaginella moellendorffii HOM05D004333 ORTHO05D005363 2.5e-101 374.8 581 37.5
CSS0041108 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 2.7e-95 354.8 477 41.5
Cpa.g.c45444 Carica papaya HOM05D004333 ORTHO05D005363 3.5e-95 354.4 311 56.3
Carub.0006s2218 Capsella rubella HOM05D004333 ORTHO05D005363 1.7e-94 352.1 237 75.1
CSS0044449 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 3.0e-94 351.3 481 42.2
Pp3c1_3140 Physcomitrium patens HOM05D004333 ORTHO05D005363 7.5e-90 336.7 580 33.6
CAN.G481.55 Capsicum annuum HOM05D004333 ORTHO05D005363 3.5e-79 301.2 392 43.1
SHI08285 Sapria himalayana HOM05D004333 ORTHO05D000009 1.5e-74 285.8 326 46.9
CAN.G481.58 Capsicum annuum HOM05D004333 ORTHO05D005363 6.4e-65 253.8 220 56.8
SEGI_10720 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 2.7e-63 248.4 474 31.4
SHI08286 Sapria himalayana HOM05D004333 ORTHO05D005363 4.6e-63 247.7 325 42.5
SEGI_07013 Sequoiadendron giganteum HOM05D004333 ORTHO05D000001 9.0e-59 233.4 430 35.3
VMungo1309G3147 Vigna mungo HOM05D004333 ORTHO05D005363 1.1e-48 199.9 163 62.0
Psat0s3076g0080 Pisum sativum HOM05D004333 ORTHO05D001713 3.2e-48 198.4 143 67.8
Psat1g135480 Pisum sativum HOM05D004333 ORTHO05D005363 7.4e-45 187.2 123 70.7
Nitab4.5_0004178g0040 Nicotiana tabacum HOM05D004333 ORTHO05D005363 5.3e-43 181.0 187 49.2
CAN.G3762.1 Capsicum annuum HOM05D004333 ORTHO05D005363 1.3e-38 166.4 239 39.3
CAN.G481.59 Capsicum annuum HOM05D004333 ORTHO05D005363 5.7e-37 161.0 102 74.5
Cre09.g415400 Chlamydomonas reinhardtii HOM05D004333 ORTHO05D005363 3.8e-33 148.3 666 23.6
SHI08279 Sapria himalayana HOM05D004333 ORTHO05D005363 6.5e-33 147.5 136 57.4
SHI08287 Sapria himalayana HOM05D004333 ORTHO05D005363 2.0e-26 125.9 167 45.5
MCO09G360 Micromonas commoda HOM05D004333 ORTHO05D005363 1.6e-23 116.3 342 28.1
Psat6g091080 Pisum sativum HOM05D004333 ORTHO05D005363 2.8e-20 105.5 126 43.7
Solyc03g082680.4 Solanum lycopersicum HOM05D004333 ORTHO05D005363 1.9e-16 92.8 58 74.1
Nitab4.5_0004178g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 3.2e-16 92.0 193 32.6
SEGI_24760 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 6.1e-15 87.8 58 72.4
BolC2t12087H Brassica oleracea HOM05D004333 ORTHO05D040299 1.0e-09 70.5 95 45.3
ATR0697G222 Amborella trichopoda HOM05D004333 ORTHO05D038300 1.7e-09 69.7 100 38.0
Psat6g175840 Pisum sativum HOM05D006947 ORTHO05D005363 9.4e-08 63.9 76 39.5
Psat4g128000 Pisum sativum HOM05D002621 ORTHO05D004807 1.2e-07 63.5 76 39.5
arahy.Tifrunner.gnm1.ann1.UK8Y7I Arachis hypogaea HOM05D004333 ORTHO05D005363 6.1e-07 61.2 142 29.6
SHI08288 Sapria himalayana HOM05D003057 ORTHO05D003904 2.3e-06 59.3 56 46.4
A02p40430 Brassica napus HOM05D004333 ORTHO05D040299 8.8e-06 57.4 29 86.2


User provided reference genes

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