Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG11G15040 Aethionema arabicum HOM05D004649 ORTHO05D005446 5.0e-238 827.4 426 100.0
Thhalv10013615m.g Eutrema salsugineum HOM05D004649 ORTHO05D005446 6.8e-203 710.7 426 84.5
Sp6g29780 Schrenkiella parvula HOM05D004649 ORTHO05D005446 6.0e-199 697.6 426 84.3
AT5G14250 Arabidopsis thaliana HOM05D004649 ORTHO05D005446 2.5e-197 692.2 426 83.8
Carub.0006s1245 Capsella rubella HOM05D004649 ORTHO05D005446 1.6e-196 689.5 426 82.4
THA.LOC104821114 Tarenaya hassleriana HOM05D004649 ORTHO05D005446 8.1e-196 687.2 426 82.2
BraA02t05210Z Brassica rapa HOM05D004649 ORTHO05D005446 9.0e-195 683.7 426 81.9
BcaNung03172 Brassica carinata HOM05D004649 ORTHO05D005446 1.2e-194 683.3 423 82.0
A02p02400 Brassica napus HOM05D005656 ORTHO05D007094 1.2e-194 683.3 425 81.9
BcaC03g13505 Brassica carinata HOM05D004649 ORTHO05D005446 7.6e-194 680.6 427 82.2
BolC2t06607H Brassica oleracea HOM05D005656 ORTHO05D005446 9.9e-194 680.2 426 82.2
C02p06640 Brassica napus HOM05D004649 ORTHO05D005446 1.1e-192 676.8 427 81.7
BraA03t09983Z Brassica rapa HOM05D004649 ORTHO05D005446 2.7e-191 672.2 426 81.2
A03p06510 Brassica napus HOM05D004649 ORTHO05D005446 1.3e-190 669.8 426 81.0
BcaB08g36970 Brassica carinata HOM05D004649 ORTHO05D005446 6.9e-187 657.5 426 80.0
C09p62910 Brassica napus HOM05D005656 ORTHO05D007094 7.6e-186 654.1 425 78.8
BolC9t59128H Brassica oleracea HOM05D005656 ORTHO05D007094 7.6e-186 654.1 425 78.8
BcaC04g19049 Brassica carinata HOM05D005656 ORTHO05D007094 2.2e-185 652.5 425 78.4
BcaB01g06336 Brassica carinata HOM05D004649 ORTHO05D005446 1.4e-184 649.8 426 78.6
A10p24220 Brassica napus HOM05D005656 ORTHO05D007094 1.4e-184 649.8 425 77.6
BraA10t44487Z Brassica rapa HOM05D005656 ORTHO05D007094 7.1e-184 647.5 425 77.2
AL6G24930 Arabidopsis lyrata HOM05D004649 ORTHO05D005446 1.2e-183 646.7 426 79.1
CARHR199090 Cardamine hirsuta HOM05D004649 ORTHO05D005446 1.2e-175 620.2 387 81.7
Duzib264G0046 Durio zibethinus HOM05D004649 ORTHO05D005446 1.6e-164 583.2 426 70.0
Thecc.04G029900 Theobroma cacao HOM05D004649 ORTHO05D005446 2.4e-163 579.3 423 69.7
CSS0030171 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 1.5e-162 576.6 426 69.5
Atru.chr6.2512 Acer truncatum HOM05D004649 ORTHO05D005446 2.0e-162 576.2 426 68.8
Gorai.012G088900 Gossypium raimondii HOM05D004649 ORTHO05D005446 2.0e-162 576.2 426 69.7
CSS0047966 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 3.4e-162 575.5 426 69.5
QL02p072453 Quercus lobata HOM05D004649 ORTHO05D005446 3.4e-162 575.5 425 70.4
TWI36G0899 Tripterygium wilfordii HOM05D004649 ORTHO05D005446 3.4e-162 575.5 426 69.5
Manes.17G106100 Manihot esculenta HOM05D004649 ORTHO05D005446 4.5e-162 575.1 426 69.2
CANSAT64G0679 Cannabis sativa HOM05D004649 ORTHO05D005446 7.6e-162 574.3 426 70.0
Gohir.D04G079000 Gossypium hirsutum HOM05D004649 ORTHO05D005446 3.8e-161 572.0 426 69.2
Gohir.A05G340700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 8.5e-161 570.9 426 69.0
Dinv33366 Davidia involucrata HOM05D004649 ORTHO05D005446 3.2e-160 568.9 426 69.0
Cpa.g.sc130.9 Carica papaya HOM05D004649 ORTHO05D005446 4.2e-160 568.5 426 69.0
GSVIVG01001824001 Vitis vinifera HOM05D004649 ORTHO05D005446 9.4e-160 567.4 426 68.3
Ciclev10015345m.g Citrus clementina HOM05D004649 ORTHO05D005446 1.2e-159 567.0 426 68.3
Prupe.3G302400 Prunus persica HOM05D004649 ORTHO05D005446 1.6e-159 566.6 426 68.5
Dinv25679 Davidia involucrata HOM05D004649 ORTHO05D005446 4.6e-159 565.1 424 69.1
Gorai.006G040000 Gossypium raimondii HOM05D004649 ORTHO05D005446 4.6e-159 565.1 426 67.8
CiPaw.04G034500 Carya illinoinensis HOM05D004649 ORTHO05D005446 3.0e-158 562.4 422 68.7
Gohir.A09G034200 Gossypium hirsutum HOM05D004649 ORTHO05D005446 3.0e-158 562.4 426 67.6
Potri.001G334200 Populus trichocarpa HOM05D004649 ORTHO05D005446 3.9e-158 562.0 426 67.8
Glyma.05G075400 Glycine max HOM05D004649 ORTHO05D005446 2.2e-156 556.2 426 67.4
TAR371G0838 Trochodendron aralioides HOM05D004649 ORTHO05D005446 2.2e-156 556.2 426 67.4
Actinidia05924 Actinidia chinensis HOM05D004649 ORTHO05D005446 3.7e-156 555.4 427 67.7
Sopen02g038570 Solanum pennellii HOM05D004649 ORTHO05D005446 4.8e-156 555.1 426 66.2
RcHm_v2.0_Chr2g0174731 Rosa chinensis HOM05D004649 ORTHO05D005446 1.8e-155 553.1 423 66.9
Rhsim10G0008900 Rhododendron simsii HOM05D004649 ORTHO05D005446 2.4e-155 552.7 427 68.4
Solyc02g093920.2 Solanum lycopersicum HOM05D004649 ORTHO05D005446 3.1e-155 552.4 426 66.0
PGSC0003DMG400020222 Solanum tuberosum HOM05D004649 ORTHO05D005446 3.1e-155 552.4 426 65.7
MD09G1015400 Malus domestica HOM05D004649 ORTHO05D005446 4.1e-155 552.0 426 67.1
PGR142G2348 Punica granatum HOM05D004649 ORTHO05D005446 4.1e-155 552.0 424 67.7
MSTRG.15559 Avicennia marina HOM05D004649 ORTHO05D005446 6.9e-155 551.2 426 65.5
MELO3C008213.2 Cucumis melo HOM05D004649 ORTHO05D005446 6.9e-155 551.2 426 67.8
Nitab4.5_0000559g0250 Nicotiana tabacum HOM05D004649 ORTHO05D005446 6.9e-155 551.2 426 66.2
vmacro05936 Vaccinium macrocarpon HOM05D004649 ORTHO05D005446 1.5e-154 550.1 426 67.6
MD17G1015500 Malus domestica HOM05D004649 ORTHO05D005446 1.0e-153 547.4 426 66.4
CsaV3_6G001150 Cucumis sativus L. HOM05D004649 ORTHO05D005446 2.2e-153 546.2 426 66.9
VMungo1080G0439 Vigna mungo HOM05D004649 ORTHO05D005446 2.9e-153 545.8 426 66.2
Glyma.19G075700 Glycine max HOM05D004649 ORTHO05D005446 5.0e-153 545.0 426 66.0
Phvul.004G055700 Phaseolus vulgaris HOM05D004649 ORTHO05D005446 6.5e-153 544.7 426 65.3
CAN.G473.77 Capsicum annuum HOM05D004649 ORTHO05D005446 8.5e-153 544.3 426 64.8
Migut.K01446 Erythranthe guttata HOM05D004649 ORTHO05D005446 1.9e-152 543.1 426 66.0
Gohir.D09G035100 Gossypium hirsutum HOM05D004649 ORTHO05D005446 1.9e-152 543.1 426 66.0
AUR62036815 Chenopodium quinoa HOM05D004649 ORTHO05D005446 4.2e-152 542.0 426 65.7
FAN09G0187 Fragaria x ananassa HOM05D004649 ORTHO05D005446 4.2e-152 542.0 423 65.5
Nitab4.5_0001031g0020 Nicotiana tabacum HOM05D004649 ORTHO05D005446 5.5e-152 541.6 426 64.8
FAN02G2492 Fragaria x ananassa HOM05D004649 ORTHO05D005446 2.7e-151 539.3 423 65.5
AUR62033709 Chenopodium quinoa HOM05D004649 ORTHO05D005446 3.6e-151 538.9 426 65.3
FvH4_6g52990 Fragaria vesca HOM05D004649 ORTHO05D005446 3.6e-151 538.9 423 65.2
Nitab4.5_0006819g0030 Nicotiana tabacum HOM05D004649 ORTHO05D005446 6.1e-151 538.1 433 64.2
SGA_v2.0_scaffold154G37160 Striga asiatica HOM05D004649 ORTHO05D005446 1.4e-150 537.0 425 65.4
arahy.Tifrunner.gnm1.ann1.2RTQ1W Arachis hypogaea HOM05D004649 ORTHO05D005446 3.9e-150 535.4 428 65.7
Ca_04417_v3 Cicer arietinum L. HOM05D004649 ORTHO05D005446 8.8e-150 534.3 427 65.6
HanXRQChr14g0450901 Helianthus annuus HOM05D004649 ORTHO05D005446 1.5e-149 533.5 426 63.4
Eucgr.I01664 Eucalyptus grandis HOM05D004649 ORTHO05D005446 2.0e-149 533.1 403 67.0
COL.COLO4_08766 Corchorus olitorius HOM05D004649 ORTHO05D005446 2.6e-149 532.7 423 66.4
Duzib147G0539 Durio zibethinus HOM05D004649 ORTHO05D005446 2.6e-149 532.7 426 65.7
Lsat_1_v5_gn_2_93941 Lactuca sativa HOM05D004649 ORTHO05D005446 3.3e-149 532.3 425 63.8
CiPaw.03G052200 Carya illinoinensis HOM05D004649 ORTHO05D005446 2.2e-148 529.6 426 64.8
Cc07_g00570 Coffea canephora HOM05D004649 ORTHO05D005446 2.2e-148 529.6 429 64.6
Lalb_Chr02g0157841 Lupinus albus HOM05D004649 ORTHO05D005446 2.2e-148 529.6 428 64.7
ECA238G0199 Erigeron canadensis HOM05D004649 ORTHO05D005446 4.8e-148 528.5 426 62.7
CAN.G1965.13 Capsicum annuum HOM05D004649 ORTHO05D005446 2.4e-147 526.2 425 63.5
arahy.Tifrunner.gnm1.ann1.B3K3FC Arachis hypogaea HOM05D004649 ORTHO05D005446 7.0e-147 524.6 435 64.4
Medtr6g023350 Medicago truncatula HOM05D004649 ORTHO05D005446 5.9e-146 521.5 428 65.0
Sed0002339 Sechium edule HOM05D004649 ORTHO05D005446 1.0e-145 520.8 426 65.0
HanXRQChr07g0198311 Helianthus annuus HOM05D004649 ORTHO05D005446 1.3e-145 520.4 426 62.4
DCAR_011306 Daucus carota HOM05D004649 ORTHO05D005446 2.2e-145 519.6 427 62.8
ClCG11G006900 Citrullus lanatus HOM05D004649 ORTHO05D005446 8.5e-145 517.7 460 61.3
TPR.G7524 Trifolium pratense HOM05D004649 ORTHO05D005446 5.5e-144 515.0 428 63.3
FAN05G5354 Fragaria x ananassa HOM05D004649 ORTHO05D005446 9.4e-144 514.2 465 59.6
Lj1g0022023 Lotus japonicus HOM05D004649 ORTHO05D005446 1.2e-143 513.8 428 63.1
CDE09G0552 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 4.7e-143 511.9 426 63.1
Aqoxy5G03494 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 1.4e-142 510.4 430 61.9
Gohir.D10G084700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 1.3e-140 503.8 426 62.0
Peaxi162Scf00700g00129 Petunia axillaris HOM05D004649 ORTHO05D005446 6.3e-140 501.5 421 63.2
Haze_14832 Corylus avellana HOM05D004649 ORTHO05D005446 1.1e-139 500.7 459 60.1
Peaxi162Scf00420g00411 Petunia axillaris HOM05D004649 ORTHO05D005446 2.4e-139 499.6 434 61.5
Psat1g084880 Pisum sativum HOM05D004649 ORTHO05D005446 7.7e-138 494.6 428 61.4
HPP92_017768 Vanilla planifolia HOM05D004649 ORTHO05D005446 1.3e-137 493.8 423 59.8
Gorai.011G092400 Gossypium raimondii HOM05D004649 ORTHO05D005446 6.5e-137 491.5 426 62.4
Hund06757 Selenicereus undatus HOM05D004649 ORTHO05D005446 2.3e-134 483.0 426 60.8
Nn2g10549 Nelumbo nucifera HOM05D004649 ORTHO05D005446 6.7e-134 481.5 426 61.0
PSO782G5348 Papaver somniferum HOM05D004649 ORTHO05D005446 7.5e-133 478.0 427 60.0
Lj7C608T4 Lonicera japonica HOM05D004649 ORTHO05D005446 1.7e-132 476.9 426 60.6
Nitab4.5_0002887g0140 Nicotiana tabacum HOM05D004649 ORTHO05D005446 3.7e-132 475.7 426 59.6
BcaB01g05123 Brassica carinata HOM05D004649 ORTHO05D005446 8.2e-132 474.6 355 71.3
Sc07g0004210 Simmondsia chinensis HOM05D004649 ORTHO05D005446 1.7e-129 466.8 383 63.7
unitig_52.g17652 Utricularia gibba HOM05D004649 ORTHO05D005446 8.5e-129 464.5 437 58.6
Zm00001eb261210 Zea mays HOM05D004649 ORTHO05D005446 8.5e-129 464.5 426 58.2
Os08g0119000 Oryza sativa ssp. japonica HOM05D004649 ORTHO05D005446 1.5e-128 463.8 427 58.1
C03p07530 Brassica napus HOM05D004649 ORTHO05D005446 1.2e-127 460.7 365 68.8
Potri.017G066300 Populus trichocarpa HOM05D004649 ORTHO05D005446 6.1e-127 458.4 324 71.9
DCAR_015086 Daucus carota HOM05D004649 ORTHO05D005446 1.4e-126 457.2 422 56.2
Sed0000018 Sechium edule HOM05D004649 ORTHO05D005446 8.8e-126 454.5 426 58.7
Aqoxy3G01472 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 2.0e-125 453.4 427 59.0
Manes.15G158000 Manihot esculenta HOM05D004649 ORTHO05D005446 2.6e-125 453.0 314 73.6
CDE02G4363 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 2.1e-119 433.3 448 55.8
SMO351G0195 Selaginella moellendorffii HOM05D004649 ORTHO05D005446 5.7e-117 425.2 425 52.9
Mapoly0005s0216 Marchantia polymorpha HOM05D004649 ORTHO05D005446 1.7e-116 423.7 428 52.8
Pp3c11_20060 Physcomitrium patens HOM05D004649 ORTHO05D005446 2.7e-114 416.4 428 51.2
ATR0124G048 Amborella trichopoda HOM05D004649 ORTHO05D005446 3.5e-114 416.0 358 60.1
AagrBONN_evm.TU.Sc2ySwM_368.1057 Anthoceros agrestis HOM05D004649 ORTHO05D005446 1.2e-106 391.0 452 48.7
EL10As11g23981 Beta vulgaris HOM05D004649 ORTHO05D005446 8.6e-105 384.8 392 55.4
PSO017G3153 Papaver somniferum HOM05D004649 ORTHO05D005446 6.4e-100 368.6 400 52.2
CBR_g75710 Chara braunii HOM05D004649 ORTHO05D005446 1.9e-96 357.1 430 46.5
Nn3g16527 Nelumbo nucifera HOM05D004649 ORTHO05D005446 2.3e-94 350.1 284 63.0
Sabra16G0215300 Salix brachista HOM05D004649 ORTHO05D005446 1.7e-92 344.0 242 72.7
Hma1.2p1_0571F.1_g180750 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 3.0e-89 333.2 240 72.1
C09p61600 Brassica napus HOM05D004649 ORTHO05D005446 3.9e-89 332.8 324 59.3
Zm00001eb173540 Zea mays HOM05D004649 ORTHO05D005446 2.1e-87 327.0 322 55.3
Actinidia36180 Actinidia chinensis HOM05D004649 ORTHO05D005446 1.4e-86 324.3 427 47.5
BcaC04g18970 Brassica carinata HOM05D004649 ORTHO05D005446 3.4e-77 293.1 359 52.4
A03p07400 Brassica napus HOM05D004649 ORTHO05D005446 2.2e-76 290.4 192 79.2
BraA03t10063Z Brassica rapa HOM05D004649 ORTHO05D005446 5.8e-69 265.8 191 72.8
Cre16.g671100 Chlamydomonas reinhardtii HOM05D004649 ORTHO05D005446 2.9e-68 263.5 432 38.7
BolC9t59028H Brassica oleracea HOM05D004649 ORTHO05D005446 4.9e-68 262.7 306 53.6
PRCOL_00002547 Prasinoderma coloniale HOM05D004649 ORTHO05D005446 1.0e-60 238.4 333 41.4
Gohir.A01G185660 Gossypium hirsutum HOM05D004649 ORTHO05D005446 7.1e-59 232.3 214 57.9
CAN.G473.64 Capsicum annuum HOM05D004649 ORTHO05D005446 2.8e-47 193.7 176 61.4
BolC3t13254H Brassica oleracea HOM05D004649 ORTHO05D005446 5.9e-45 186.0 106 88.7
SEGI_26946 Sequoiadendron giganteum HOM05D004649 ORTHO05D005446 3.7e-39 166.8 134 61.2
Sabra07G0059200 Salix brachista HOM05D004649 ORTHO05D005446 6.3e-39 166.0 252 44.0
MCO12G022 Micromonas commoda HOM05D004649 ORTHO05D005446 1.9e-35 154.5 333 32.1
BcaB08g36975 Brassica carinata HOM05D005656 ORTHO05D007094 2.0e-32 144.4 75 90.7
Sabra07G0059100 Salix brachista HOM05D005682 ORTHO05D007050 1.1e-27 128.6 171 46.2
FAN09G3197 Fragaria x ananassa HOM05D004649 ORTHO05D005446 5.3e-22 109.8 119 49.6
QL12p000006 Quercus lobata HOM05D004649 ORTHO05D005446 6.5e-20 102.8 78 64.1
QL12p000135 Quercus lobata HOM05D004649 ORTHO05D005446 6.5e-20 102.8 78 64.1
Duzib268G1750 Durio zibethinus HOM05D004649 ORTHO05D005446 5.5e-19 99.8 125 44.0
Oeu042415.1 Olea europaea HOM05D004649 ORTHO05D005446 1.6e-13 81.6 49 81.6
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 1.3e-12 78.6 51 74.5
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 2.9e-12 77.4 47 78.7
Aqoxy5G03476 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 9.4e-11 72.4 55 63.6
Hma1.2p1_0571F.1_g180740 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 1.8e-09 68.2 62 54.8
FvH4_2g01181 Fragaria vesca HOM05D000564 ORTHO05D005446 7.5e-08 62.8 53 66.0
EL10As11g23980 Beta vulgaris HOM05D004649 ORTHO05D005446 9.1e-06 55.8 38 65.8


User provided reference genes

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