Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG11G13340 Aethionema arabicum HOM05D004363 ORTHO05D005110 0.0e+00 2545.8 1303 100.0
AL6G27170 Arabidopsis lyrata HOM05D004363 ORTHO05D005110 0.0e+00 2113.6 1307 83.1
Sp6g27880 Schrenkiella parvula HOM05D004363 ORTHO05D005110 0.0e+00 2106.6 1307 83.2
AT5G16280 Arabidopsis thaliana HOM05D004363 ORTHO05D005110 0.0e+00 2090.8 1307 81.6
Carub.0006s1447 Capsella rubella HOM05D004363 ORTHO05D005110 0.0e+00 2089.3 1307 82.8
BraA10t44344Z Brassica rapa HOM05D004363 ORTHO05D005110 0.0e+00 2073.1 1308 82.4
A10p22780 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 2071.6 1308 82.4
Thhalv10012466m.g Eutrema salsugineum HOM05D004363 ORTHO05D005110 0.0e+00 2067.4 1307 82.3
BraA03t10093Z Brassica rapa HOM05D004363 ORTHO05D005110 0.0e+00 2065.8 1308 82.0
A03p07650 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 2062.3 1308 81.9
BolC9t58910H Brassica oleracea HOM05D004363 ORTHO05D005110 0.0e+00 2058.1 1308 81.9
C03p08890 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 2057.3 1307 81.5
BolC3t13384H Brassica oleracea HOM05D004363 ORTHO05D005110 0.0e+00 2055.8 1308 81.7
BcaB01g04994 Brassica carinata HOM05D004363 ORTHO05D005110 0.0e+00 1956.4 1307 78.6
BcaNung06113 Brassica carinata HOM05D004363 ORTHO05D005110 0.0e+00 1905.2 1306 77.5
THA.LOC104820934 Tarenaya hassleriana HOM05D004363 ORTHO05D005110 0.0e+00 1884.4 1318 73.0
COL.COLO4_29546 Corchorus olitorius HOM05D004363 ORTHO05D005110 0.0e+00 1573.9 1320 60.2
Duzib093G0100 Durio zibethinus HOM05D004363 ORTHO05D005110 0.0e+00 1559.7 1322 60.7
Duzib128G0297 Durio zibethinus HOM05D004363 ORTHO05D005110 0.0e+00 1528.8 1349 59.4
Atru.chr8.1332 Acer truncatum HOM05D004363 ORTHO05D005110 0.0e+00 1528.1 1320 60.2
Gohir.A11G315700 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1516.9 1317 59.5
Gohir.D11G332900 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1513.8 1313 59.3
Gorai.007G363900 Gossypium raimondii HOM05D004363 ORTHO05D005110 0.0e+00 1513.8 1314 59.2
Ciclev10010925m.g Citrus clementina HOM05D004363 ORTHO05D005110 0.0e+00 1511.9 1321 59.6
Dinv31774 Davidia involucrata HOM05D004363 ORTHO05D005110 0.0e+00 1490.3 1313 59.2
CiPaw.10G018600 Carya illinoinensis HOM05D004363 ORTHO05D005110 0.0e+00 1482.6 1311 58.8
Prupe.7G093600 Prunus persica HOM05D004363 ORTHO05D005110 0.0e+00 1481.5 1315 58.9
Potri.016G068800 Populus trichocarpa HOM05D004363 ORTHO05D005110 0.0e+00 1480.3 1310 59.5
FvH4_6g20450 Fragaria vesca HOM05D004363 ORTHO05D005110 0.0e+00 1473.4 1313 57.9
GSVIVG01022591001 Vitis vinifera HOM05D004363 ORTHO05D005110 0.0e+00 1471.4 1291 59.9
MD12G1041600 Malus domestica HOM05D004363 ORTHO05D005110 0.0e+00 1466.1 1318 58.6
Sabra16G0069700 Salix brachista HOM05D004363 ORTHO05D005110 0.0e+00 1463.7 1325 58.8
MD14G1040700 Malus domestica HOM05D004363 ORTHO05D005110 0.0e+00 1460.3 1332 58.1
CsaV3_3G038050 Cucumis sativus L. HOM05D004363 ORTHO05D005110 0.0e+00 1457.6 1314 58.4
Sed0002127 Sechium edule HOM05D004363 ORTHO05D005110 0.0e+00 1456.8 1306 58.7
TWI74G0412 Tripterygium wilfordii HOM05D004363 ORTHO05D005110 0.0e+00 1451.8 1325 58.6
CANSAT64G2344 Cannabis sativa HOM05D004363 ORTHO05D005110 0.0e+00 1450.3 1313 57.8
Oeu035643.1 Olea europaea HOM05D004363 ORTHO05D005110 0.0e+00 1443.7 1317 57.2
CSS0038425 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 0.0e+00 1439.1 1276 58.9
ClCG10G018260 Citrullus lanatus HOM05D004363 ORTHO05D005110 0.0e+00 1438.3 1382 56.0
TAR628G0010 Trochodendron aralioides HOM05D004363 ORTHO05D005110 0.0e+00 1437.2 1325 57.2
Gorai.009G393900 Gossypium raimondii HOM05D004363 ORTHO05D005110 0.0e+00 1436.0 1324 56.2
TAR169G0003 Trochodendron aralioides HOM05D004363 ORTHO05D005110 0.0e+00 1430.6 1324 57.3
TWI77G0878 Tripterygium wilfordii HOM05D004363 ORTHO05D005110 0.0e+00 1430.2 1346 57.1
Thecc.05G106200 Theobroma cacao HOM05D004363 ORTHO05D005110 0.0e+00 1424.8 1212 61.1
Sopen01g002950 Solanum pennellii HOM05D004363 ORTHO05D005110 0.0e+00 1424.1 1317 56.1
FAN09G2042 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1422.5 1403 53.5
Cfa020046 Carpinus fangiana HOM05D004363 ORTHO05D005110 0.0e+00 1418.3 1314 57.5
Solyc01g006960.3 Solanum lycopersicum HOM05D004363 ORTHO05D005110 0.0e+00 1417.5 1316 55.9
arahy.Tifrunner.gnm1.ann1.D60SL5 Arachis hypogaea HOM05D004363 ORTHO05D005110 0.0e+00 1414.4 1317 56.4
Manes.08G034300 Manihot esculenta HOM05D004363 ORTHO05D005110 0.0e+00 1412.5 1263 58.6
arahy.Tifrunner.gnm1.ann1.KT4HPP Arachis hypogaea HOM05D004363 ORTHO05D005110 0.0e+00 1410.2 1317 56.6
FAN14G2782 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1409.0 1435 53.0
Lalb_Chr01g0017831 Lupinus albus HOM05D004363 ORTHO05D005110 0.0e+00 1409.0 1310 55.9
Nn6g34649 Nelumbo nucifera HOM05D004363 ORTHO05D005110 0.0e+00 1408.3 1330 56.1
Eucgr.A02575 Eucalyptus grandis HOM05D004363 ORTHO05D005110 0.0e+00 1406.3 1315 55.5
Glyma.03G202700 Glycine max HOM05D004363 ORTHO05D005110 0.0e+00 1404.8 1316 55.0
Lj1g0000064 Lotus japonicus HOM05D004363 ORTHO05D005110 0.0e+00 1397.9 1316 55.6
Glyma.19G200400 Glycine max HOM05D004363 ORTHO05D005110 0.0e+00 1397.1 1316 55.2
Ca_09062_v3 Cicer arietinum L. HOM05D004363 ORTHO05D005110 0.0e+00 1394.8 1321 55.0
vmacro07483 Vaccinium macrocarpon HOM05D004363 ORTHO05D005110 0.0e+00 1393.3 1308 55.7
Psat0s3922g0040 Pisum sativum HOM05D004363 ORTHO05D005110 0.0e+00 1384.0 1316 55.2
PGR004G0690 Punica granatum HOM05D004363 ORTHO05D005110 0.0e+00 1383.6 1317 55.4
TPR.G31289 Trifolium pratense HOM05D004363 ORTHO05D005110 0.0e+00 1382.1 1319 54.3
Migut.J00693 Erythranthe guttata HOM05D004363 ORTHO05D005110 0.0e+00 1380.9 1314 55.4
MSTRG.19302 Avicennia marina HOM05D004363 ORTHO05D005110 0.0e+00 1378.2 1312 54.6
Phvul.001G196200 Phaseolus vulgaris HOM05D004363 ORTHO05D005110 0.0e+00 1376.3 1315 54.3
Medtr7g106380 Medicago truncatula HOM05D004363 ORTHO05D005110 0.0e+00 1375.1 1317 54.8
VMungo1383G2497 Vigna mungo HOM05D004363 ORTHO05D005110 0.0e+00 1371.7 1319 54.3
CAN.G911.40 Capsicum annuum HOM05D004363 ORTHO05D005110 0.0e+00 1367.1 1317 53.9
Aqoxy1G00638 Aquilegia oxysepala HOM05D004363 ORTHO05D005110 0.0e+00 1365.5 1326 54.9
DCAR_020694 Daucus carota HOM05D004363 ORTHO05D005110 0.0e+00 1356.7 1381 52.2
MSTRG.5891 Avicennia marina HOM05D004363 ORTHO05D005110 0.0e+00 1340.5 1315 53.8
QL07p036386 Quercus lobata HOM05D004363 ORTHO05D005110 0.0e+00 1340.1 1121 61.1
ECA233G0072 Erigeron canadensis HOM05D004363 ORTHO05D005110 0.0e+00 1338.6 1309 53.1
RcHm_v2.0_Chr3g0476301 Rosa chinensis HOM05D004363 ORTHO05D005110 0.0e+00 1333.5 1120 60.1
HanXRQChr02g0053261 Helianthus annuus HOM05D004363 ORTHO05D005110 0.0e+00 1319.3 1314 53.2
EL10Ac5g11738 Beta vulgaris HOM05D004363 ORTHO05D005110 0.0e+00 1304.3 1325 52.5
Sc01g0005470 Simmondsia chinensis HOM05D004363 ORTHO05D005110 0.0e+00 1303.9 1318 53.6
FAN02G1528 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1299.6 1120 58.8
Cc06_g06670 Coffea canephora HOM05D004363 ORTHO05D005110 0.0e+00 1298.5 1121 59.0
PSO339G1158 Papaver somniferum HOM05D004363 ORTHO05D005110 0.0e+00 1288.1 1317 51.9
PSO384G4461 Papaver somniferum HOM05D004363 ORTHO05D005110 0.0e+00 1284.2 1321 52.1
Dinv12347 Davidia involucrata HOM05D004363 ORTHO05D005110 0.0e+00 1275.8 1090 59.2
AUR62041186 Chenopodium quinoa HOM05D004363 ORTHO05D005110 0.0e+00 1271.1 1310 50.3
Lsat_1_v5_gn_6_33820 Lactuca sativa HOM05D004363 ORTHO05D005110 0.0e+00 1268.8 1309 51.9
Rhsim11G0045000 Rhododendron simsii HOM05D004363 ORTHO05D005110 0.0e+00 1268.1 1160 56.6
Lalb_Chr25g0287961 Lupinus albus HOM05D004363 ORTHO05D005110 0.0e+00 1256.9 1315 51.6
SGA_v2.0_scaffold13G06653 Striga asiatica HOM05D004363 ORTHO05D005110 0.0e+00 1256.9 1288 52.3
MELO3C009547.2 Cucumis melo HOM05D004363 ORTHO05D005110 0.0e+00 1251.9 1427 50.3
Zm00001eb060010 Zea mays HOM05D004363 ORTHO05D005110 0.0e+00 1218.4 1308 48.3
Hund10860 Selenicereus undatus HOM05D004363 ORTHO05D005110 0.0e+00 1216.4 1317 50.4
HPP92_013952 Vanilla planifolia HOM05D004363 ORTHO05D005110 0.0e+00 1215.3 1277 50.7
Peaxi162Scf00582g00064 Petunia axillaris HOM05D004363 ORTHO05D005110 0.0e+00 1212.2 1227 52.6
ATR0772G191 Amborella trichopoda HOM05D004363 ORTHO05D005110 0.0e+00 1204.9 1335 48.8
AUR62030686 Chenopodium quinoa HOM05D004363 ORTHO05D005110 0.0e+00 1195.6 1308 48.8
CARHR197030 Cardamine hirsuta HOM05D004363 ORTHO05D005110 0.0e+00 1191.0 648 92.0
Gohir.D04G092000 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1189.5 1101 56.0
Os03g0786900 Oryza sativa ssp. japonica HOM05D004363 ORTHO05D005110 0.0e+00 1188.3 1298 48.8
FAN05G1872 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1186.8 1137 55.8
FAN05G3395 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1172.9 1176 54.2
CDE11G0453 Ceratophyllum demersum HOM05D004363 ORTHO05D005110 0.0e+00 1145.6 1323 48.7
SEGI_03324 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 0.0e+00 1097.4 1396 45.8
Nitab4.5_0001177g0040 Nicotiana tabacum HOM05D004363 ORTHO05D005110 3.4e-253 879.4 941 49.3
Pp3c6_8810 Physcomitrium patens HOM05D004363 ORTHO05D005110 3.5e-250 869.4 1353 37.8
Mapoly0053s0062 Marchantia polymorpha HOM05D004363 ORTHO05D005110 2.8e-247 859.8 1371 38.1
Ah.07g203620 Amaranthus hybridus HOM05D004363 ORTHO05D005110 1.2e-242 844.3 857 52.3
Gohir.A04G054800 Gossypium hirsutum HOM05D004363 ORTHO05D005110 9.6e-232 808.1 765 55.7
AagrBONN_evm.TU.Sc2ySwM_228.1566 Anthoceros agrestis HOM05D004363 ORTHO05D005110 3.2e-227 793.1 1122 39.8
SMO196G0050 Selaginella moellendorffii HOM05D004363 ORTHO05D005110 1.2e-192 678.3 931 41.8
unitig_578.g15812 Utricularia gibba HOM05D004363 ORTHO05D005110 1.4e-174 618.2 1307 32.7
Cpa.g.sc104.18 Carica papaya HOM05D004363 ORTHO05D005110 1.6e-154 551.6 379 73.9
TAR623G0254 Trochodendron aralioides HOM05D004363 ORTHO05D005110 1.1e-145 522.3 575 48.9
Nitab4.5_0001191g0010 Nicotiana tabacum HOM05D004363 ORTHO05D005110 3.8e-143 513.8 669 43.6
Lj1A1055T62 Lonicera japonica HOM05D004363 ORTHO05D005110 5.8e-136 490.0 349 69.9
Haze_20158 Corylus avellana HOM05D004363 ORTHO05D005110 1.9e-131 474.9 505 53.9
Cpa.g.sc104.13 Carica papaya HOM05D004363 ORTHO05D005110 4.8e-122 443.7 473 51.0
Cpa.g.sc104.16 Carica papaya HOM05D004363 ORTHO05D005110 4.3e-115 420.6 335 63.0
Cre01.g024400 Chlamydomonas reinhardtii HOM05D004363 ORTHO05D005110 2.5e-99 368.2 1076 27.2
Haze_20157 Corylus avellana HOM05D004363 ORTHO05D005110 5.1e-92 344.0 222 69.4
Gohir.D04G091900 Gossypium hirsutum HOM05D004363 ORTHO05D005110 3.9e-84 317.8 209 71.3
Gohir.A04G054750 Gossypium hirsutum HOM05D004363 ORTHO05D005110 5.2e-84 317.4 214 71.0
PRCOL_00001893 Prasinoderma coloniale HOM05D004363 ORTHO05D005110 2.2e-82 312.0 1061 25.2
Actinidia03876 Actinidia chinensis HOM05D004363 ORTHO05D005110 7.7e-80 303.5 427 44.0
Lj1C1055T8 Lonicera japonica HOM05D004363 ORTHO05D005110 6.1e-77 293.9 209 67.5
Actinidia03984 Actinidia chinensis HOM05D004363 ORTHO05D005110 1.3e-74 286.2 471 39.9
CSS0042424 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 1.0e-63 250.0 158 70.9
CSS0011588 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 3.1e-57 228.4 148 68.2
CBR_g74641 Chara braunii HOM05D004363 ORTHO05D005110 6.6e-55 220.7 723 27.2
SEGI_33831 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 3.3e-54 218.4 189 53.4
Hma1.2p1_0064F.1_g034600 Hydrangea macrophylla HOM05D004363 ORTHO05D005110 3.4e-51 208.4 298 41.9
Nn3g20229 Nelumbo nucifera HOM05D004363 ORTHO05D005110 5.8e-51 207.6 167 61.1
C09p60760 Brassica napus HOM05D004363 ORTHO05D005110 3.2e-49 201.8 120 85.0
MCO09G191 Micromonas commoda HOM05D004363 ORTHO05D005110 7.3e-46 190.7 861 23.7
SEGI_22432 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 1.2e-37 163.3 207 42.0
SEGI_10491 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 2.3e-36 159.1 122 58.2
Actinidia03986 Actinidia chinensis HOM05D004363 ORTHO05D005110 5.2e-36 157.9 125 58.4
Actinidia03879 Actinidia chinensis HOM05D004363 ORTHO05D005110 1.9e-33 149.4 143 53.8
SEGI_28545 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 9.2e-33 147.1 114 72.8
Ah.07g203610 Amaranthus hybridus HOM05D004363 ORTHO05D005110 5.1e-31 141.4 225 39.1
SHI08961 Sapria himalayana HOM05D004363 ORTHO05D005110 2.4e-28 132.5 375 31.7
SHI08956 Sapria himalayana HOM05D004363 ORTHO05D005110 5.2e-28 131.3 113 70.8
CSS0037163 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 9.9e-27 127.1 103 63.1
SHI08960 Sapria himalayana HOM05D004363 ORTHO05D005110 1.7e-26 126.3 179 37.4
RcHm_v2.0_Chr3g0476311 Rosa chinensis HOM05D004363 ORTHO05D005110 3.9e-23 115.2 158 44.9
SEGI_19509 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 1.5e-19 103.2 81 64.2
Ah.07g203630 Amaranthus hybridus HOM05D004363 ORTHO05D005110 4.4e-19 101.7 209 33.0
Rhsim11G0045100 Rhododendron simsii HOM05D004363 ORTHO05D005110 4.6e-16 91.7 152 39.5
SHI08951 Sapria himalayana HOM05D004363 ORTHO05D005110 7.8e-16 90.9 74 64.9
Actinidia03877 Actinidia chinensis HOM05D004363 ORTHO05D005110 1.0e-15 90.5 88 51.1
arahy.Tifrunner.gnm1.ann1.BA6WS2 Arachis hypogaea HOM05D004363 ORTHO05D005110 3.9e-15 88.6 57 64.9
SHI08954 Sapria himalayana HOM05D004363 ORTHO05D005110 1.9e-14 86.3 65 56.9
SHI08962 Sapria himalayana HOM05D004363 ORTHO05D005110 1.9e-14 86.3 244 30.7
ATR0820G261 Amborella trichopoda HOM05D004363 ORTHO05D005110 1.3e-13 83.6 203 34.0
arahy.Tifrunner.gnm1.ann1.P34FZA Arachis hypogaea HOM05D004363 ORTHO05D005110 8.1e-13 80.9 57 63.2
Lsat_1_v5_gn_8_3860 Lactuca sativa HOM05D004363 ORTHO05D005110 1.3e-10 73.6 100 44.0
CAN.G526.3 Capsicum annuum HOM05D004363 ORTHO05D005110 2.4e-09 69.3 76 65.8
Lsat_1_v5_gn_8_81001 Lactuca sativa HOM05D004363 ORTHO05D005110 1.8e-07 63.2 67 47.8
Lsat_1_v5_gn_3_22681 Lactuca sativa HOM05D004363 ORTHO05D005110 1.5e-06 60.1 45 62.2
arahy.Tifrunner.gnm1.ann1.5GE6FN Arachis hypogaea HOM05D000323 ORTHO05D000201 4.3e-06 58.5 84 36.9
Glyma.19G200100 Glycine max HOM05D003781 ORTHO05D004299 4.3e-06 58.5 73 58.9


User provided reference genes

Program Settings