Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG10G6570 Aethionema arabicum HOM05D003539 ORTHO05D004111 0.0e+00 1164.4 621 100.0
Sp4g17040 Schrenkiella parvula HOM05D003539 ORTHO05D004111 5.0e-263 911.0 627 75.9
AL4G30740 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 1.0e-260 903.3 633 74.4
AT2G34750 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 3.6e-253 878.2 630 73.8
Thhalv10016395m.g Eutrema salsugineum HOM05D003539 ORTHO05D004111 3.6e-253 878.2 631 75.3
CARHR128910 Cardamine hirsuta HOM05D003539 ORTHO05D004111 2.2e-250 869.0 628 73.2
Carub.0004s1644 Capsella rubella HOM05D003539 ORTHO05D004111 9.5e-246 853.6 630 72.5
Aa31LG6G11830 Aethionema arabicum HOM05D003539 ORTHO05D004111 7.3e-238 827.4 631 71.2
BolC3t14644H Brassica oleracea HOM05D003539 ORTHO05D004111 4.7e-237 824.7 628 73.1
BraA03t11183Z Brassica rapa HOM05D003539 ORTHO05D004111 4.7e-237 824.7 632 70.7
A03p19290 Brassica napus HOM05D003539 ORTHO05D004111 3.1e-236 822.0 632 70.6
C03p22480 Brassica napus HOM05D003539 ORTHO05D004111 1.2e-235 820.1 628 72.6
Thhalv10007103m.g Eutrema salsugineum HOM05D003539 ORTHO05D004111 5.8e-235 817.8 634 68.9
BcaB06g28796 Brassica carinata HOM05D003539 ORTHO05D004111 6.2e-229 797.7 626 68.7
AL1G44630 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 3.1e-220 768.8 631 64.5
A04p26550 Brassica napus HOM05D003539 ORTHO05D004111 9.0e-220 767.3 631 66.6
Carub.0001s2885 Capsella rubella HOM05D003539 ORTHO05D004111 4.5e-219 765.0 609 67.0
BraA04t18159Z Brassica rapa HOM05D003539 ORTHO05D004111 3.2e-217 758.8 651 64.4
THA.LOC104814350 Tarenaya hassleriana HOM05D003539 ORTHO05D004111 1.8e-215 753.1 607 66.4
AT1G30590 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 1.8e-199 699.9 625 61.6
C04p14010 Brassica napus HOM05D003539 ORTHO05D004111 2.5e-193 679.5 633 60.7
BolC4t22991H Brassica oleracea HOM05D003539 ORTHO05D004111 5.5e-193 678.3 634 60.9
BraA05t20035Z Brassica rapa HOM05D003539 ORTHO05D004111 6.1e-192 674.9 628 59.7
AL4G35010 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 1.4e-185 653.7 611 60.4
Atru.chr3.55 Acer truncatum HOM05D003539 ORTHO05D004111 2.5e-185 652.9 622 56.6
Eucgr.J02557 Eucalyptus grandis HOM05D003539 ORTHO05D004111 3.6e-184 649.0 642 55.6
Carub.0004s2129 Capsella rubella HOM05D003539 ORTHO05D004111 3.0e-183 646.0 635 59.2
GSVIVG01026448001 Vitis vinifera HOM05D003539 ORTHO05D004111 2.8e-181 639.4 629 55.0
TAR381G1444 Trochodendron aralioides HOM05D003539 ORTHO05D004111 6.5e-178 628.2 616 55.2
Dinv40214 Davidia involucrata HOM05D003539 ORTHO05D004111 3.2e-177 625.9 630 53.3
TWI79G1391 Tripterygium wilfordii HOM05D003539 ORTHO05D004111 3.2e-177 625.9 621 54.4
Gohir.D03G066500 Gossypium hirsutum HOM05D003539 ORTHO05D004111 2.3e-175 619.8 621 55.6
Dinv28297 Davidia involucrata HOM05D003539 ORTHO05D004111 3.0e-175 619.4 633 54.8
CSS0035723 Camellia sinensis var. sinensis HOM05D003539 ORTHO05D004111 3.9e-175 619.0 615 55.9
Gorai.003G064600 Gossypium raimondii HOM05D003539 ORTHO05D004111 6.7e-175 618.2 621 55.4
Manes.01G157300 Manihot esculenta HOM05D003539 ORTHO05D004111 1.7e-173 613.6 629 55.5
Nn5g28137 Nelumbo nucifera HOM05D003539 ORTHO05D004111 2.8e-173 612.8 637 53.1
AT2G39240 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 6.3e-173 611.7 623 58.4
Hma1.2p1_0085F.1_g044410 Hydrangea macrophylla HOM05D003539 ORTHO05D004111 6.3e-173 611.7 620 54.2
BcaC02g11551 Brassica carinata HOM05D003539 ORTHO05D004111 2.6e-171 606.3 634 56.9
PGR044G1248 Punica granatum HOM05D003539 ORTHO05D004111 7.7e-171 604.7 616 53.2
Thecc.01G002200 Theobroma cacao HOM05D003539 ORTHO05D004111 2.9e-170 602.8 620 53.9
BcaC01g05764 Brassica carinata HOM05D003539 ORTHO05D004111 1.5e-169 600.5 622 59.3
THA.LOC104798595 Tarenaya hassleriana HOM05D003539 ORTHO05D004111 7.2e-169 598.2 528 59.1
vmacro18474 Vaccinium macrocarpon HOM05D003539 ORTHO05D004111 3.6e-168 595.9 644 52.3
Sed0003470 Sechium edule HOM05D003539 ORTHO05D004111 2.6e-166 589.7 623 52.0
Sc06g0005250 Simmondsia chinensis HOM05D003539 ORTHO05D004111 7.5e-166 588.2 634 53.0
Oeu063413.2 Olea europaea HOM05D003539 ORTHO05D004111 9.7e-166 587.8 622 52.3
CANSAT35G0647 Cannabis sativa HOM05D003539 ORTHO05D004111 1.7e-165 587.0 630 52.2
Oeu010807.1 Olea europaea HOM05D003539 ORTHO05D004111 4.8e-165 585.5 624 51.9
Glyma.09G196200 Glycine max HOM05D003539 ORTHO05D004111 8.3e-165 584.7 636 50.8
BcaC06g35972 Brassica carinata HOM05D003539 ORTHO05D004111 1.4e-164 583.9 599 56.9
ClCG02G000270 Citrullus lanatus HOM05D003539 ORTHO05D004111 2.4e-164 583.2 656 50.9
Glyma.16G112800 Glycine max HOM05D003539 ORTHO05D004111 2.4e-164 583.2 640 50.2
CiPaw.15G173100 Carya illinoinensis HOM05D003539 ORTHO05D004111 2.7e-163 579.7 631 51.8
Cc07_g12170 Coffea canephora HOM05D003539 ORTHO05D004111 3.5e-163 579.3 623 53.8
Cfa007110 Carpinus fangiana HOM05D003539 ORTHO05D004111 1.0e-162 577.8 631 52.1
Haze_03640 Corylus avellana HOM05D003539 ORTHO05D004111 1.3e-162 577.4 631 51.8
C07p01640 Brassica napus HOM05D003539 ORTHO05D004111 6.5e-162 575.1 581 57.3
Phvul.010G020100 Phaseolus vulgaris HOM05D003539 ORTHO05D004111 1.1e-161 574.3 617 51.5
Lsat_1_v5_gn_5_30740 Lactuca sativa HOM05D003539 ORTHO05D004111 1.2e-160 570.9 617 53.2
QL06p053198 Quercus lobata HOM05D003539 ORTHO05D004111 3.6e-160 569.3 615 51.2
TAR376G1176 Trochodendron aralioides HOM05D003539 ORTHO05D004111 8.0e-160 568.2 591 53.3
COL.COLO4_16224 Corchorus olitorius HOM05D003539 ORTHO05D004111 4.0e-159 565.8 616 50.6
VMungo1309G1473 Vigna mungo HOM05D003539 ORTHO05D004111 1.5e-158 563.9 626 50.5
ECA233G1070 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.8e-157 558.9 615 53.8
Manes.11G091200 Manihot esculenta HOM05D003539 ORTHO05D004111 1.2e-155 554.3 636 50.8
Lalb_Chr09g0334501 Lupinus albus HOM05D003539 ORTHO05D004111 3.5e-155 552.7 625 49.6
HanXRQChr16g0510861 Helianthus annuus HOM05D003539 ORTHO05D004111 7.7e-155 551.6 612 51.1
Nitab4.5_0000588g0180 Nicotiana tabacum HOM05D003539 ORTHO05D004111 7.7e-155 551.6 615 50.6
Potri.005G098500 Populus trichocarpa HOM05D003539 ORTHO05D004111 7.7e-155 551.6 645 50.5
Nitab4.5_0000855g0080 Nicotiana tabacum HOM05D003539 ORTHO05D004111 1.0e-154 551.2 613 50.2
CsaV3_3G008890 Cucumis sativus L. HOM05D003539 ORTHO05D004111 1.7e-154 550.4 541 53.8
Lalb_Chr05g0229501 Lupinus albus HOM05D003539 ORTHO05D004111 1.7e-154 550.4 620 49.2
MSTRG.20424 Avicennia marina HOM05D003539 ORTHO05D004111 1.9e-153 547.0 624 48.7
Lj2C504G7 Lonicera japonica HOM05D003539 ORTHO05D004111 4.2e-153 545.8 514 56.4
Nitab4.5_0003096g0020 Nicotiana tabacum HOM05D003539 ORTHO05D004111 9.5e-153 544.7 585 51.5
SGA_v2.0_scaffold36G14401 Striga asiatica HOM05D003539 ORTHO05D004111 1.2e-152 544.3 624 48.9
ClCG05G001500 Citrullus lanatus HOM05D003539 ORTHO05D004111 1.6e-152 543.9 655 47.5
EL10Ac4g09711 Beta vulgaris HOM05D003539 ORTHO05D004111 4.7e-152 542.3 636 48.0
Sed0013779 Sechium edule HOM05D003539 ORTHO05D004111 6.1e-152 542.0 512 55.5
AL4G36550 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 1.4e-151 540.8 574 56.8
arahy.Tifrunner.gnm1.ann1.PPI4NM Arachis hypogaea HOM05D003539 ORTHO05D004111 1.8e-151 540.4 687 44.8
arahy.Tifrunner.gnm1.ann1.VZS2MK Arachis hypogaea HOM05D003539 ORTHO05D004111 2.3e-151 540.0 722 42.8
CAN.G1428.5 Capsicum annuum HOM05D003539 ORTHO05D004111 8.9e-151 538.1 613 51.5
Prupe.7G186400 Prunus persica HOM05D003539 ORTHO05D004111 8.9e-151 538.1 635 49.9
arahy.Tifrunner.gnm1.ann1.UQ0JCX Arachis hypogaea HOM05D003539 ORTHO05D004111 1.2e-150 537.7 716 43.2
Lj4g0013403 Lotus japonicus HOM05D003539 ORTHO05D004111 1.5e-150 537.3 632 49.2
arahy.Tifrunner.gnm1.ann1.4LH58N Arachis hypogaea HOM05D003539 ORTHO05D004111 1.3e-149 534.3 709 43.3
MD02G1108900 Malus domestica HOM05D003539 ORTHO05D004111 2.2e-149 533.5 638 49.8
Rhsim08G0026200 Rhododendron simsii HOM05D003539 ORTHO05D004111 6.3e-149 531.9 646 49.8
MELO3C006107.2 Cucumis melo HOM05D003539 ORTHO05D004111 3.2e-148 529.6 545 53.9
SGA_v2.0_scaffold172G38971 Striga asiatica HOM05D003539 ORTHO05D004111 7.0e-148 528.5 678 47.5
Sabra05G0080900 Salix brachista HOM05D003539 ORTHO05D004111 2.7e-147 526.6 618 50.0
Solyc02g082340.3 Solanum lycopersicum HOM05D003539 ORTHO05D004111 4.5e-147 525.8 612 48.4
Sopen02g027000 Solanum pennellii HOM05D003539 ORTHO05D004111 7.8e-147 525.0 613 49.1
Ca_21575_v3 Cicer arietinum L. HOM05D003539 ORTHO05D004111 1.0e-146 524.6 621 48.0
C04p63970 Brassica napus HOM05D003539 ORTHO05D004111 1.9e-145 520.4 445 63.8
Duzib147G0916 Durio zibethinus HOM05D003539 ORTHO05D004111 1.9e-145 520.4 611 50.4
Migut.A00468 Erythranthe guttata HOM05D003539 ORTHO05D004111 4.3e-145 519.2 634 45.7
Hund21770 Selenicereus undatus HOM05D003539 ORTHO05D004111 7.3e-145 518.5 635 47.4
PSO017G0405 Papaver somniferum HOM05D003539 ORTHO05D004111 2.9e-141 506.5 628 46.8
arahy.Tifrunner.gnm1.ann1.JIK3X3 Arachis hypogaea HOM05D003539 ORTHO05D004111 3.7e-141 506.1 697 42.3
MBI04_g31205_MAGBIO Magnolia biondii HOM05D003539 ORTHO05D004111 1.1e-140 504.6 606 46.5
Sc09g0001980 Simmondsia chinensis HOM05D003539 ORTHO05D004111 3.2e-140 503.1 517 53.8
Haze_00123 Corylus avellana HOM05D003539 ORTHO05D004111 4.6e-139 499.2 629 47.9
Actinidia28753 Actinidia chinensis HOM05D003539 ORTHO05D004111 3.9e-138 496.1 611 48.0
HanXRQChr09g0270331 Helianthus annuus HOM05D003539 ORTHO05D004111 8.6e-138 495.0 610 49.7
Aqoxy6G01535 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 1.9e-137 493.8 671 45.0
PSO170G6051 Papaver somniferum HOM05D003539 ORTHO05D004111 5.6e-137 492.3 630 46.2
Medtr4g117680 Medicago truncatula HOM05D003539 ORTHO05D004111 1.8e-135 487.3 638 44.7
AUR62006940 Chenopodium quinoa HOM05D003539 ORTHO05D004111 6.8e-135 485.3 625 45.3
Psat3g044960 Pisum sativum HOM05D003539 ORTHO05D004111 6.8e-135 485.3 604 46.5
FAN26G1725 Fragaria x ananassa HOM05D003539 ORTHO05D004111 1.5e-134 484.2 615 46.8
FAN28G2151 Fragaria x ananassa HOM05D003539 ORTHO05D004111 1.5e-134 484.2 615 47.2
Peaxi162Scf00677g00114 Petunia axillaris HOM05D003539 ORTHO05D004111 2.0e-134 483.8 627 45.3
FvH4_1g10010 Fragaria vesca HOM05D003539 ORTHO05D004111 4.4e-134 482.6 615 47.2
RcHm_v2.0_Chr2g0096801 Rosa chinensis HOM05D003539 ORTHO05D004111 9.8e-134 481.5 626 47.3
FAN19G1026 Fragaria x ananassa HOM05D003539 ORTHO05D004111 7.1e-132 475.3 626 46.5
FAN23G2523 Fragaria x ananassa HOM05D003539 ORTHO05D004111 2.1e-131 473.8 634 45.9
Aqoxy3G00418 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 1.1e-129 468.0 645 44.2
CDE07G0217 Ceratophyllum demersum HOM05D003539 ORTHO05D004111 1.5e-129 467.6 541 47.1
Ah.06g188300 Amaranthus hybridus HOM05D003539 ORTHO05D004111 1.9e-129 467.2 620 44.5
TPR.G29658 Trifolium pratense HOM05D003539 ORTHO05D004111 7.3e-129 465.3 626 43.1
Hund28202 Selenicereus undatus HOM05D003539 ORTHO05D004111 9.5e-129 464.9 606 44.2
Hund28214 Selenicereus undatus HOM05D003539 ORTHO05D004111 9.5e-129 464.9 606 44.2
Psat7g042440 Pisum sativum HOM05D003539 ORTHO05D004111 1.2e-128 464.5 651 43.6
Aqoxy3G00897 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 2.1e-128 463.8 587 46.8
Gohir.A02G120000 Gossypium hirsutum HOM05D003539 ORTHO05D004111 2.8e-128 463.4 447 57.9
Cfa016374 Carpinus fangiana HOM05D003539 ORTHO05D004111 2.3e-127 460.3 575 46.6
C07p01430 Brassica napus HOM05D003539 ORTHO05D004111 2.0e-126 457.2 444 59.5
Os06g0688100 Oryza sativa ssp. japonica HOM05D003539 ORTHO05D004111 5.8e-126 455.7 620 43.1
unitig_699.g19839 Utricularia gibba HOM05D003539 ORTHO05D004111 1.7e-125 454.1 608 43.4
Peaxi162Scf00344g01722 Petunia axillaris HOM05D003539 ORTHO05D004111 7.8e-123 445.3 641 42.9
Peaxi162Scf00015g00939 Petunia axillaris HOM05D003539 ORTHO05D004111 1.7e-122 444.1 630 45.2
AUR62000583 Chenopodium quinoa HOM05D003539 ORTHO05D004111 2.5e-121 440.3 623 42.4
SEGI_33601 Sequoiadendron giganteum HOM05D003539 ORTHO05D004111 7.1e-116 422.2 632 40.8
ATR0605G358 Amborella trichopoda HOM05D003539 ORTHO05D004111 3.5e-115 419.9 528 44.5
Zm00001eb226160 Zea mays HOM05D003539 ORTHO05D004111 8.1e-112 408.7 629 39.9
Mapoly0144s0013 Marchantia polymorpha HOM05D003539 ORTHO05D004111 1.1e-97 361.7 563 39.6
SMO356G0429 Selaginella moellendorffii HOM05D003539 ORTHO05D004111 3.0e-90 337.0 618 38.8
Pp3c18_6750 Physcomitrium patens HOM05D003539 ORTHO05D004111 1.1e-89 335.1 576 36.6
Pp3c18_6751 Physcomitrium patens HOM05D003539 ORTHO05D004111 1.1e-89 335.1 576 36.6
BolC4t27866H Brassica oleracea HOM05D003539 ORTHO05D004111 7.4e-89 332.4 257 69.6
Pp3c21_14490 Physcomitrium patens HOM05D003539 ORTHO05D004111 6.2e-88 329.3 561 37.3
BcaC06g35980 Brassica carinata HOM05D003539 ORTHO05D004111 2.3e-82 310.8 275 64.7
SalBow7G2073 Salvia bowleyana HOM05D003539 ORTHO05D004111 2.3e-82 310.8 355 45.6
Actinidia02872 Actinidia chinensis HOM05D003539 ORTHO05D004111 4.8e-80 303.1 306 52.9
HPP92_018392 Vanilla planifolia HOM05D003539 ORTHO05D004111 1.5e-78 298.1 404 42.3
BcaB05g23816 Brassica carinata HOM05D003539 ORTHO05D004111 1.9e-76 291.2 316 53.8
Actinidia20762 Actinidia chinensis HOM05D003539 ORTHO05D004111 2.3e-74 284.3 300 52.3
AagrBONN_evm.TU.Sc2ySwM_368.2744 Anthoceros agrestis HOM05D003539 ORTHO05D004111 5.1e-74 283.1 546 35.0
Actinidia20763 Actinidia chinensis HOM05D003539 ORTHO05D004111 4.1e-71 273.5 342 48.0
FAN23G0637 Fragaria x ananassa HOM05D003539 ORTHO05D004111 7.9e-67 259.2 347 45.2
SalBow7G0297 Salvia bowleyana HOM05D003539 ORTHO05D004111 5.9e-62 243.0 263 52.5
Oeu000297.1 Olea europaea HOM05D003539 ORTHO05D004111 3.0e-58 230.7 255 49.4
SHI13961 Sapria himalayana HOM05D003539 ORTHO05D004111 9.7e-57 225.7 346 42.5
DCAR_007550 Daucus carota HOM05D003539 ORTHO05D004111 1.7e-56 224.9 262 51.5
Cre03.g207950 Chlamydomonas reinhardtii HOM05D003539 ORTHO05D004111 1.1e-52 212.2 591 28.3
Ciclev10010838m.g Citrus clementina HOM05D003539 ORTHO05D004111 4.1e-47 193.7 186 54.3
GSVIVG01026439001 Vitis vinifera HOM05D003539 ORTHO05D004111 4.9e-40 170.2 163 50.9
PSO782G3432 Papaver somniferum HOM05D003539 ORTHO05D004111 1.6e-38 165.2 302 34.8
BcaC06g35981 Brassica carinata HOM05D003539 ORTHO05D004111 2.7e-38 164.5 196 49.5
DCAR_007549 Daucus carota HOM05D003539 ORTHO05D004111 2.9e-37 161.0 181 49.7
Gohir.A02G119802 Gossypium hirsutum HOM05D003539 ORTHO05D004111 4.2e-36 157.1 164 50.6
C03p59690 Brassica napus HOM05D003539 ORTHO05D004111 2.2e-32 144.8 304 34.9
PRCOL_00004831 Prasinoderma coloniale HOM05D003539 ORTHO05D004111 6.4e-32 143.3 547 26.1
CBR_g23271 Chara braunii HOM05D003539 ORTHO05D004111 1.9e-28 131.7 342 29.5
RcHm_v2.0_Chr2g0096841 Rosa chinensis HOM05D003539 ORTHO05D004111 7.3e-28 129.8 199 41.2
arahy.Tifrunner.gnm1.ann1.PJLZ8M Arachis hypogaea HOM05D003539 ORTHO05D004111 5.2e-26 123.6 119 55.5
BolC3t18231H Brassica oleracea HOM05D003539 ORTHO05D004111 9.8e-25 119.4 74 68.9
Cfa022324 Carpinus fangiana HOM05D003539 ORTHO05D004111 2.9e-24 117.9 558 23.5
Cpa.g.sc7.212 Carica papaya HOM05D003539 ORTHO05D004111 1.4e-23 115.5 255 34.5
Cpa.g.sc7.213 Carica papaya HOM05D003539 ORTHO05D004111 2.4e-23 114.8 78 62.8
Cfa022001 Carpinus fangiana HOM05D003539 ORTHO05D004111 2.4e-23 114.8 119 52.9
EL10Ac6g14558 Beta vulgaris HOM05D003539 ORTHO05D004111 7.8e-22 109.8 103 52.4
CBR_g23267 Chara braunii HOM05D000019 ORTHO05D000048 1.0e-21 109.4 182 39.6
MCO15G598 Micromonas commoda HOM05D003539 ORTHO05D004111 1.5e-17 95.5 629 22.1
HanXRQChr05g0145981 Helianthus annuus HOM05D003539 ORTHO05D004111 2.2e-16 91.7 184 33.7
Aa31sc1240G10 Aethionema arabicum HOM05D003539 ORTHO05D004111 8.1e-11 73.2 47 78.7
Potri.007G065101 Populus trichocarpa HOM05D003539 ORTHO05D004111 3.4e-09 67.8 193 35.2
Medtr8g085920 Medicago truncatula HOM05D003539 ORTHO05D004111 5.8e-09 67.0 90 41.1
C06p38600 Brassica napus HOM05D001833 ORTHO05D001776 2.2e-08 65.1 92 43.5
Prupe.7G186500 Prunus persica HOM05D003539 ORTHO05D004111 2.4e-07 61.6 168 31.5


User provided reference genes

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