Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG10G11890 Aethionema arabicum HOM05D003729 ORTHO05D004384 0.0e+00 1325.8 686 100.0
Thhalv10005807m.g Eutrema salsugineum HOM05D003729 ORTHO05D004384 0.0e+00 1138.3 689 86.5
Sp5g05590 Schrenkiella parvula HOM05D003729 ORTHO05D004384 0.0e+00 1134.8 690 86.4
AL5G38440 Arabidopsis lyrata HOM05D003729 ORTHO05D004384 0.0e+00 1132.9 689 84.8
BcaC07g40019 Brassica carinata HOM05D003729 ORTHO05D004384 0.0e+00 1124.8 688 84.7
C08p32320 Brassica napus HOM05D003729 ORTHO05D004384 0.0e+00 1124.0 688 84.7
BolC8t50846H Brassica oleracea HOM05D003729 ORTHO05D004384 0.0e+00 1121.7 688 84.4
A09p49920 Brassica napus HOM05D003729 ORTHO05D004384 0.0e+00 1113.6 689 84.8
BraA09t40443Z Brassica rapa HOM05D003729 ORTHO05D004384 0.0e+00 1111.3 689 84.6
Carub.0005s2373 Capsella rubella HOM05D003729 ORTHO05D004384 0.0e+00 1105.1 689 82.4
CARHR167140 Cardamine hirsuta HOM05D003729 ORTHO05D004384 0.0e+00 1101.3 689 81.7
A07p23200 Brassica napus HOM05D003729 ORTHO05D004384 3.0e-307 1058.1 695 78.4
BraA07t29984Z Brassica rapa HOM05D003729 ORTHO05D004384 3.0e-307 1058.1 695 78.4
BcaC08g44817 Brassica carinata HOM05D003729 ORTHO05D004384 8.7e-307 1056.6 694 78.4
BolC6t37563H Brassica oleracea HOM05D003729 ORTHO05D004384 5.7e-306 1053.9 694 78.2
THA.LOC104802558 Tarenaya hassleriana HOM05D003729 ORTHO05D004384 1.2e-303 1046.2 687 77.0
BcaC07g40088 Brassica carinata HOM05D003729 ORTHO05D004384 1.4e-299 1032.7 689 80.0
C06p24040 Brassica napus HOM05D003729 ORTHO05D004384 8.8e-299 1030.0 720 75.3
CiPaw.09G047000 Carya illinoinensis HOM05D003729 ORTHO05D004384 2.9e-262 908.7 687 67.7
QL06p031735 Quercus lobata HOM05D003729 ORTHO05D004384 2.5e-261 905.6 690 67.1
Eucgr.B01227 Eucalyptus grandis HOM05D003729 ORTHO05D004384 4.0e-259 898.3 690 69.1
Manes.15G116200 Manihot esculenta HOM05D003729 ORTHO05D004384 4.0e-259 898.3 686 67.2
GSVIVG01033615001 Vitis vinifera HOM05D003729 ORTHO05D004384 1.2e-258 896.7 690 67.4
Prupe.5G014500 Prunus persica HOM05D003729 ORTHO05D004384 3.4e-258 895.2 686 67.5
Gohir.D11G323300 Gossypium hirsutum HOM05D003729 ORTHO05D004384 4.4e-258 894.8 693 67.1
Gorai.007G353300 Gossypium raimondii HOM05D003729 ORTHO05D004384 4.4e-258 894.8 693 67.1
Gohir.A11G307900 Gossypium hirsutum HOM05D003729 ORTHO05D004384 1.1e-256 890.2 693 67.1
Duzib106G1244 Durio zibethinus HOM05D003729 ORTHO05D004384 1.4e-256 889.8 692 65.9
Hma1.2p1_0402F.1_g145090 Hydrangea macrophylla HOM05D003729 ORTHO05D004384 1.8e-256 889.4 691 66.6
Dinv34365 Davidia involucrata HOM05D003729 ORTHO05D004384 1.6e-255 886.3 705 66.5
CSS0000349 Camellia sinensis var. sinensis HOM05D003729 ORTHO05D004384 3.5e-255 885.2 690 68.1
Dinv26813 Davidia involucrata HOM05D003729 ORTHO05D004384 1.3e-254 883.2 704 66.6
Atru.chr11.1446 Acer truncatum HOM05D003729 ORTHO05D004384 5.0e-254 881.3 690 67.8
Atru.chr11.1476 Acer truncatum HOM05D003729 ORTHO05D004384 5.0e-254 881.3 690 67.8
COL.COLO4_31341 Corchorus olitorius HOM05D003729 ORTHO05D004384 1.9e-253 879.4 675 66.1
Prupe.8G004300 Prunus persica HOM05D003729 ORTHO05D004384 4.7e-252 874.8 716 64.4
AT3G56990 Arabidopsis thaliana HOM05D003729 ORTHO05D004384 1.8e-251 872.8 511 83.8
Cc06_g19080 Coffea canephora HOM05D003729 ORTHO05D004384 2.3e-251 872.5 685 67.0
TAR629G1039 Trochodendron aralioides HOM05D003729 ORTHO05D004384 5.2e-251 871.3 693 65.5
FvH4_2g11640 Fragaria vesca HOM05D003729 ORTHO05D004384 1.2e-250 870.2 688 64.8
Peaxi162Scf00146g00613 Petunia axillaris HOM05D003729 ORTHO05D004384 1.5e-250 869.8 687 65.1
Nn7g37723 Nelumbo nucifera HOM05D003729 ORTHO05D004384 2.6e-250 869.0 690 65.2
RcHm_v2.0_Chr6g0270881 Rosa chinensis HOM05D003729 ORTHO05D004384 1.1e-248 863.6 688 64.8
Actinidia38159 Actinidia chinensis HOM05D003729 ORTHO05D004384 2.4e-248 862.4 690 64.8
EL10Ac3g07219 Beta vulgaris HOM05D003729 ORTHO05D004384 3.2e-248 862.1 690 65.1
CAN.G1099.5 Capsicum annuum HOM05D003729 ORTHO05D004384 4.1e-248 861.7 685 65.3
HanXRQChr12g0359771 Helianthus annuus HOM05D003729 ORTHO05D004384 4.1e-248 861.7 690 65.1
DCAR_013638 Daucus carota HOM05D003729 ORTHO05D004384 1.2e-247 860.1 678 64.6
Nitab4.5_0005447g0050 Nicotiana tabacum HOM05D003729 ORTHO05D004384 1.2e-247 860.1 687 65.8
Lsat_1_v5_gn_5_75341 Lactuca sativa HOM05D003729 ORTHO05D004384 2.7e-247 859.0 698 65.9
Sopen10g034990 Solanum pennellii HOM05D003729 ORTHO05D004384 4.6e-247 858.2 687 64.3
Aqoxy3G00221 Aquilegia oxysepala HOM05D003729 ORTHO05D004384 7.8e-247 857.4 688 65.0
Rhsim04G0111000 Rhododendron simsii HOM05D003729 ORTHO05D004384 3.0e-246 855.5 690 64.6
Cfa020012 Carpinus fangiana HOM05D003729 ORTHO05D004384 3.9e-246 855.1 690 66.8
ClCG09G015010 Citrullus lanatus HOM05D003729 ORTHO05D004384 8.6e-246 854.0 653 66.8
HanXRQChr10g0311271 Helianthus annuus HOM05D003729 ORTHO05D004384 1.2e-244 850.1 683 64.1
PGR031G2313 Punica granatum HOM05D003729 ORTHO05D004384 1.2e-244 850.1 687 65.1
Potri.016G037400 Populus trichocarpa HOM05D003729 ORTHO05D004384 6.8e-243 844.3 689 64.7
arahy.Tifrunner.gnm1.ann1.UC9EW5 Arachis hypogaea HOM05D003729 ORTHO05D004384 2.9e-241 839.0 680 62.5
PSO782G2431 Papaver somniferum HOM05D003729 ORTHO05D004384 2.4e-240 835.9 687 62.3
Ah.04g151040 Amaranthus hybridus HOM05D003729 ORTHO05D004384 5.4e-240 834.7 687 63.6
Sed0006249 Sechium edule HOM05D003729 ORTHO05D004384 9.2e-240 833.9 672 65.0
VMungo0464G0714 Vigna mungo HOM05D003729 ORTHO05D004384 1.6e-239 833.2 682 62.6
Phvul.004G146700 Phaseolus vulgaris HOM05D003729 ORTHO05D004384 3.5e-239 832.0 680 62.2
AUR62023904 Chenopodium quinoa HOM05D003729 ORTHO05D004384 4.6e-239 831.6 652 66.0
PSO478G2512 Papaver somniferum HOM05D003729 ORTHO05D004384 4.6e-239 831.6 687 61.9
ECA234G1736 Erigeron canadensis HOM05D003729 ORTHO05D004384 7.8e-239 830.9 688 64.2
CsaV3_7G006250 Cucumis sativus L. HOM05D003729 ORTHO05D004384 2.3e-238 829.3 653 65.1
Lalb_Chr06g0173631 Lupinus albus HOM05D003729 ORTHO05D004384 3.0e-238 828.9 681 62.6
SGA_v2.0_scaffold149G36565 Striga asiatica HOM05D003729 ORTHO05D004384 6.6e-238 827.8 693 65.1
Glyma.09G171000 Glycine max HOM05D003729 ORTHO05D004384 8.6e-238 827.4 682 62.5
Psat5g246840 Pisum sativum HOM05D003729 ORTHO05D004384 8.6e-238 827.4 683 61.3
Glyma.07G106900 Glycine max HOM05D003729 ORTHO05D004384 1.9e-237 826.2 684 62.4
vmacro09025 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 1.2e-236 823.5 739 60.4
Lj6g0002169 Lotus japonicus HOM05D003729 ORTHO05D004384 3.6e-236 822.0 687 62.2
HPP92_002023 Vanilla planifolia HOM05D003729 ORTHO05D004384 3.6e-236 822.0 689 61.8
unitig_27.g24938 Utricularia gibba HOM05D003729 ORTHO05D004384 1.8e-235 819.7 694 61.4
Sabra16G0039300 Salix brachista HOM05D003729 ORTHO05D004384 2.0e-234 816.2 723 61.1
Sabra16G0044200 Salix brachista HOM05D003729 ORTHO05D004384 2.6e-234 815.8 723 61.0
ATR0757G154 Amborella trichopoda HOM05D003729 ORTHO05D004384 5.8e-234 814.7 685 61.2
Ca_11233_v3 Cicer arietinum L. HOM05D003729 ORTHO05D004384 1.7e-233 813.1 679 60.5
Thecc.05G137800 Theobroma cacao HOM05D003729 ORTHO05D004384 1.7e-233 813.1 691 62.1
Medtr2g081080 Medicago truncatula HOM05D003729 ORTHO05D004384 3.7e-233 812.0 669 61.9
AUR62003735 Chenopodium quinoa HOM05D003729 ORTHO05D004384 6.4e-233 811.2 711 60.9
MBI04_g42401_MAGBIO Magnolia biondii HOM05D003729 ORTHO05D004384 3.2e-232 808.9 692 62.4
Migut.N03364 Erythranthe guttata HOM05D003729 ORTHO05D004384 9.2e-232 807.4 687 62.0
MSTRG.19814 Avicennia marina HOM05D003729 ORTHO05D004384 2.3e-230 802.7 646 64.1
CANSAT64G1452 Cannabis sativa HOM05D003729 ORTHO05D004384 5.1e-230 801.6 689 61.1
Lj1g0021267 Lotus japonicus HOM05D003729 ORTHO05D004384 9.9e-226 787.3 687 60.7
Ciclev10027979m.g Citrus clementina HOM05D003729 ORTHO05D004384 5.1e-222 775.0 581 68.0
Zm00001eb373800 Zea mays HOM05D003729 ORTHO05D004384 1.8e-211 740.0 685 58.0
Sc13g0001200 Simmondsia chinensis HOM05D003729 ORTHO05D004384 9.9e-210 734.2 512 70.7
Nitab4.5_0000381g0340 Nicotiana tabacum HOM05D003729 ORTHO05D004384 4.9e-209 731.9 1014 44.7
FAN24G0230 Fragaria x ananassa HOM05D003729 ORTHO05D004384 2.5e-205 719.5 688 56.7
BcaB02g07627 Brassica carinata HOM05D003729 ORTHO05D004384 1.9e-197 693.3 555 69.4
MD06G1011700 Malus domestica HOM05D003729 ORTHO05D004384 4.5e-194 682.2 447 74.3
SMO334G0073 Selaginella moellendorffii HOM05D003729 ORTHO05D004384 1.7e-193 680.2 680 51.6
Pp3c18_60 Physcomitrium patens HOM05D003729 ORTHO05D004384 7.1e-192 674.9 711 50.5
Mapoly0009s0077 Marchantia polymorpha HOM05D003729 ORTHO05D004384 1.3e-190 670.6 702 50.1
AagrBONN_evm.TU.Sc2ySwM_228.5647 Anthoceros agrestis HOM05D003729 ORTHO05D004384 1.5e-189 667.2 686 51.6
TPR.G32867 Trifolium pratense HOM05D003729 ORTHO05D004384 8.5e-185 651.4 830 45.5
FAN15G2573 Fragaria x ananassa HOM05D003729 ORTHO05D004384 6.3e-180 635.2 688 52.2
MELO3C018665.2 Cucumis melo HOM05D003729 ORTHO05D004384 8.2e-180 634.8 653 53.6
arahy.Tifrunner.gnm1.ann1.HP2N24 Arachis hypogaea HOM05D003729 ORTHO05D004384 2.4e-179 633.3 545 60.4
Os06g0128400 Oryza sativa ssp. japonica HOM05D003729 ORTHO05D004384 9.7e-165 584.7 416 65.6
Lj1A1094G13 Lonicera japonica HOM05D003729 ORTHO05D004384 3.7e-164 582.8 433 66.5
CBR_g12410 Chara braunii HOM05D003729 ORTHO05D004384 9.7e-157 558.1 700 43.7
Zm00001eb378550 Zea mays HOM05D003729 ORTHO05D004384 2.6e-149 533.5 546 54.6
AUR62016564 Chenopodium quinoa HOM05D003729 ORTHO05D004384 2.2e-148 530.4 574 54.2
MCO06G073 Micromonas commoda HOM05D003729 ORTHO05D004384 3.9e-137 493.0 689 40.5
Cre03.g159950 Chlamydomonas reinhardtii HOM05D003729 ORTHO05D004384 2.1e-135 487.3 715 40.4
PRCOL_00000752 Prasinoderma coloniale HOM05D003729 ORTHO05D004384 4.9e-116 422.9 539 41.9
Thecc.05G137400 Theobroma cacao HOM05D003729 ORTHO05D004384 1.2e-111 408.3 434 50.7
SEGI_15849 Sequoiadendron giganteum HOM05D003729 ORTHO05D004384 4.9e-108 396.4 448 51.6
vmacro10990 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 1.5e-104 384.8 411 55.0
SHI40172 Sapria himalayana HOM05D003729 ORTHO05D004384 1.6e-90 338.2 432 48.1
Thecc.05G137700 Theobroma cacao HOM05D003729 ORTHO05D004384 1.8e-89 334.7 299 58.9
Atru.chr1.117 Acer truncatum HOM05D003729 ORTHO05D004384 1.9e-80 304.7 653 35.4
SHI42965 Sapria himalayana HOM05D003729 ORTHO05D004384 2.1e-79 301.2 373 49.9
Cfa025239 Carpinus fangiana HOM05D003729 ORTHO05D004384 9.0e-78 295.8 607 33.6
SHI43747 Sapria himalayana HOM05D003729 ORTHO05D004384 1.5e-77 295.0 300 53.3
Cpa.g.sc5.183 Carica papaya HOM05D003729 ORTHO05D004384 2.5e-72 277.7 255 58.8
Rhsim06G0100100 Rhododendron simsii HOM05D003729 ORTHO05D004384 1.3e-71 275.4 218 64.2
Oeu059338.2 Olea europaea HOM05D003729 ORTHO05D004384 1.0e-65 255.8 368 45.9
Cpa.g.sc1212.1 Carica papaya HOM05D003729 ORTHO05D004384 9.7e-64 249.2 140 84.3
Haze_16229 Corylus avellana HOM05D003729 ORTHO05D004384 2.0e-61 241.5 271 57.9
SHI45339 Sapria himalayana HOM05D003729 ORTHO05D004384 6.5e-60 236.5 239 52.3
Haze_20210 Corylus avellana HOM05D003729 ORTHO05D004384 1.1e-59 235.7 270 58.5
Haze_20214 Corylus avellana HOM05D003729 ORTHO05D004384 1.4e-59 235.3 270 58.5
Lj1A1094G14 Lonicera japonica HOM05D003729 ORTHO05D004384 2.2e-55 221.5 264 52.3
SHI46975 Sapria himalayana HOM05D003729 ORTHO05D004384 1.0e-52 212.6 188 56.9
vmacro10989 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 2.2e-52 211.5 266 46.2
Thecc.05G138100 Theobroma cacao HOM05D003729 ORTHO05D004384 4.2e-51 207.2 131 76.3
Thecc.05G137500 Theobroma cacao HOM05D003729 ORTHO05D004384 7.2e-51 206.5 240 57.9
HanXRQChr09g0238921 Helianthus annuus HOM05D003729 ORTHO05D004384 1.5e-43 182.2 106 76.4
SEGI_35907 Sequoiadendron giganteum HOM05D003729 ORTHO05D004384 7.5e-40 169.9 119 67.2
SHI44105 Sapria himalayana HOM05D003729 ORTHO05D004384 8.0e-34 149.8 107 64.5
Haze_20209 Corylus avellana HOM05D003729 ORTHO05D004384 2.3e-33 148.3 102 70.6
QL07p009838 Quercus lobata HOM05D003729 ORTHO05D004384 4.0e-33 147.5 119 61.3
Haze_16233 Corylus avellana HOM05D003729 ORTHO05D004384 5.2e-33 147.1 119 62.2
Haze_20213 Corylus avellana HOM05D003729 ORTHO05D004384 6.8e-33 146.7 102 69.6
arahy.Tifrunner.gnm1.ann1.7FD8QN Arachis hypogaea HOM05D003729 ORTHO05D004384 3.7e-31 141.0 206 42.2
AUR62022314 Chenopodium quinoa HOM05D000534 ORTHO05D000389 8.3e-31 139.8 149 50.3
SHI49287 Sapria himalayana HOM05D003729 ORTHO05D004384 1.4e-30 139.0 105 63.8
Haze_16231 Corylus avellana HOM05D003729 ORTHO05D004384 2.4e-30 138.3 174 44.3
Gohir.A07G111501 Gossypium hirsutum HOM05D003729 ORTHO05D004384 9.2e-30 136.3 86 74.4
Gohir.D02G195125 Gossypium hirsutum HOM05D003729 ORTHO05D004384 9.2e-30 136.3 86 74.4
Gohir.D06G065600 Gossypium hirsutum HOM05D003729 ORTHO05D004384 9.2e-30 136.3 86 74.4
Gorai.004G004200 Gossypium raimondii HOM05D003729 ORTHO05D004384 9.2e-30 136.3 102 68.6
Hund24619 Selenicereus undatus HOM05D003729 ORTHO05D004384 2.0e-29 135.2 166 49.4
Gohir.D05G190600 Gossypium hirsutum HOM05D003729 ORTHO05D004384 5.9e-29 133.7 85 72.9
Haze_16230 Corylus avellana HOM05D003729 ORTHO05D004384 3.8e-28 131.0 79 77.2
Glyma.03G135700 Glycine max HOM05D003729 ORTHO05D004384 1.9e-27 128.6 207 36.7
vmacro12362 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 1.9e-27 128.6 79 75.9
Zm00001eb034510 Zea mays HOM05D003729 ORTHO05D004384 8.0e-26 123.2 105 59.0
SHI46293 Sapria himalayana HOM05D003729 ORTHO05D004384 1.2e-24 119.4 70 74.3
SHI45328 Sapria himalayana HOM05D003729 ORTHO05D004384 7.0e-22 110.2 65 72.3
SHI38377 Sapria himalayana HOM05D003729 ORTHO05D004384 1.5e-19 102.4 62 74.2
SHI51948 Sapria himalayana HOM05D003729 ORTHO05D004384 7.3e-19 100.1 188 42.6
SHI53576 Sapria himalayana HOM05D003729 ORTHO05D004384 7.3e-19 100.1 62 74.2
Haze_16235 Corylus avellana HOM05D003729 ORTHO05D004384 2.1e-18 98.6 106 50.0
SHI50183 Sapria himalayana HOM05D003729 ORTHO05D004384 8.0e-18 96.7 97 52.6
Zm00001eb077600 Zea mays HOM05D001162 ORTHO05D029047 1.8e-17 95.5 69 63.8
Zm00001eb284510 Zea mays HOM05D001162 ORTHO05D001218 1.8e-17 95.5 56 75.0
SHI46294 Sapria himalayana HOM05D003729 ORTHO05D004384 2.3e-17 95.1 64 67.2
Zm00001eb173210 Zea mays HOM05D001162 ORTHO05D001218 4.0e-17 94.4 56 73.2
Cpa.g.sc5.181 Carica papaya HOM05D003729 ORTHO05D004384 5.2e-17 94.0 56 75.0
Sabra16G0029600 Salix brachista HOM05D000075 ORTHO05D000073 5.2e-17 94.0 86 58.1
SHI49946 Sapria himalayana HOM05D003729 ORTHO05D004384 7.5e-16 90.1 104 48.1
THA.LOC104802556 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 1.7e-15 89.0 120 49.2
FvH4_3g33711 Fragaria vesca HOM05D003729 ORTHO05D001837 2.9e-15 88.2 96 47.9
QL01p046327 Quercus lobata HOM05D003729 ORTHO05D004384 9.2e-14 83.2 53 71.7
QL93p0119_0007 Quercus lobata HOM05D003729 ORTHO05D004384 9.2e-14 83.2 53 71.7
Sabra16G0039200 Salix brachista HOM05D002722 ORTHO05D003076 2.0e-13 82.0 77 54.5
SHI48245 Sapria himalayana HOM05D003729 ORTHO05D004384 2.0e-13 82.0 63 63.5
SHI45329 Sapria himalayana HOM05D003729 ORTHO05D004384 2.7e-13 81.6 47 78.7
Sabra16G0022500 Salix brachista HOM05D000075 ORTHO05D000073 7.8e-13 80.1 55 72.7
Haze_20208 Corylus avellana HOM05D003729 ORTHO05D004384 1.0e-12 79.7 55 63.6
Oeu029504.1 Olea europaea HOM05D003729 ORTHO05D004384 4.3e-11 74.3 102 49.0
Medtr8g007595 Medicago truncatula HOM05D003729 ORTHO05D004384 4.7e-10 70.9 46 65.2
Sabra16G0044400 Salix brachista HOM05D002722 ORTHO05D003076 3.1e-09 68.2 77 48.1
SHI50413 Sapria himalayana HOM05D003729 ORTHO05D004384 1.5e-08 65.9 200 35.5
SHI48244 Sapria himalayana HOM05D003729 ORTHO05D004384 9.8e-08 63.2 60 58.3
SHI40171 Sapria himalayana HOM05D003729 ORTHO05D004384 1.3e-07 62.8 71 53.5
SHI44104 Sapria himalayana HOM05D003729 ORTHO05D004384 1.3e-07 62.8 251 32.3
Sabra06G0025400 Salix brachista HOM05D003729 ORTHO05D004384 6.4e-07 60.5 34 73.5
SHI50318 Sapria himalayana HOM05D003729 ORTHO05D004384 1.1e-06 59.7 189 28.6
SHI54010 Sapria himalayana HOM05D003729 ORTHO05D004384 9.2e-06 56.6 34 73.5


User provided reference genes

Program Settings