Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62044655 Chenopodium quinoa HOM05D000547 ORTHO05D008364 2.4e-148 528.9 275 100.0
AUR62004923 Chenopodium quinoa HOM05D000547 ORTHO05D008364 1.3e-141 506.5 270 97.4
AUR62001029 Chenopodium quinoa HOM05D000547 ORTHO05D008364 4.1e-124 448.4 280 86.1
EL10Ac4g09110 Beta vulgaris HOM05D000547 ORTHO05D008364 8.4e-77 291.2 299 61.2
EL10Ac4g09109 Beta vulgaris HOM05D000547 ORTHO05D008364 2.1e-72 276.6 293 60.1
Ah.06g192200 Amaranthus hybridus HOM05D000547 ORTHO05D008364 5.4e-60 235.3 276 56.2
Sc09g0003850 Simmondsia chinensis HOM05D000547 ORTHO05D008364 5.8e-46 188.7 290 44.8
Potri.013G039100 Populus trichocarpa HOM05D000547 ORTHO05D008364 1.1e-39 167.9 282 42.9
Gohir.A11G253900 Gossypium hirsutum HOM05D000547 ORTHO05D008364 1.8e-39 167.2 271 42.4
Gohir.D11G263800 Gossypium hirsutum HOM05D000547 ORTHO05D008364 9.0e-39 164.9 271 41.0
Gorai.007G283800 Gossypium raimondii HOM05D000547 ORTHO05D008364 9.0e-39 164.9 271 41.0
VMungo0540G2363 Vigna mungo HOM05D000547 ORTHO05D008364 1.5e-38 164.1 275 40.7
Manes.08G132700 Manihot esculenta HOM05D000547 ORTHO05D008364 3.4e-38 162.9 274 42.7
Thecc.05G287000 Theobroma cacao HOM05D000547 ORTHO05D008364 1.1e-36 157.9 277 39.4
Phvul.006G100300 Phaseolus vulgaris HOM05D000547 ORTHO05D008364 3.2e-36 156.4 275 40.4
Potri.005G051700 Populus trichocarpa HOM05D000547 ORTHO05D008364 4.2e-36 156.0 280 41.4
Manes.09G154300 Manihot esculenta HOM05D000547 ORTHO05D008364 7.2e-36 155.2 277 39.0
COL.COLO4_15302 Corchorus olitorius HOM05D000547 ORTHO05D008364 1.2e-35 154.5 278 38.8
Duzib177G0744 Durio zibethinus HOM05D000547 ORTHO05D008364 1.2e-35 154.5 276 40.9
Medtr1g081180 Medicago truncatula HOM05D000547 ORTHO05D008364 2.7e-35 153.3 270 41.9
VMungo0720G0737 Vigna mungo HOM05D000547 ORTHO05D008364 3.5e-35 152.9 271 38.0
FAN02G0308 Fragaria x ananassa HOM05D000547 ORTHO05D008364 7.9e-35 151.8 271 41.0
Prupe.6G341000 Prunus persica HOM05D000547 ORTHO05D008364 3.0e-34 149.8 275 39.6
FAN09G4443 Fragaria x ananassa HOM05D000547 ORTHO05D008364 3.9e-34 149.4 271 40.2
vmacro05242 Vaccinium macrocarpon HOM05D000547 ORTHO05D008364 3.9e-34 149.4 281 36.3
FvH4_6g03310 Fragaria vesca HOM05D000547 ORTHO05D008364 5.1e-34 149.1 278 40.6
FAN05G4528 Fragaria x ananassa HOM05D000547 ORTHO05D008364 5.1e-34 149.1 271 39.9
Glyma.20G224000 Glycine max HOM05D000547 ORTHO05D008364 5.1e-34 149.1 270 39.6
Hma1.2p1_0083F.1_g042830 Hydrangea macrophylla HOM05D000547 ORTHO05D008364 5.1e-34 149.1 271 37.6
CiPaw.07G065000 Carya illinoinensis HOM05D000547 ORTHO05D008364 1.5e-33 147.5 292 37.0
FAN05G0366 Fragaria x ananassa HOM05D000547 ORTHO05D008364 1.5e-33 147.5 271 39.5
FAN14G2789 Fragaria x ananassa HOM05D000547 ORTHO05D008364 1.5e-33 147.5 278 39.2
Phvul.007G186700 Phaseolus vulgaris HOM05D000547 ORTHO05D008364 1.9e-33 147.1 270 38.9
Actinidia05769 Actinidia chinensis HOM05D000547 ORTHO05D008364 5.7e-33 145.6 270 37.0
Cfa006451 Carpinus fangiana HOM05D000547 ORTHO05D008364 5.7e-33 145.6 270 36.7
Glyma.19G243500 Glycine max HOM05D000547 ORTHO05D008364 9.7e-33 144.8 273 39.6
ClCG06G009170 Citrullus lanatus HOM05D000547 ORTHO05D008364 2.2e-32 143.7 270 35.9
Ciclev10000454m.g Citrus clementina HOM05D000547 ORTHO05D008364 2.8e-32 143.3 277 39.0
Duzib106G1727 Durio zibethinus HOM05D000547 ORTHO05D008364 2.8e-32 143.3 284 38.4
Lalb_Chr06g0168011 Lupinus albus HOM05D000547 ORTHO05D008364 6.3e-32 142.1 270 38.1
Lalb_Chr02g0148721 Lupinus albus HOM05D000547 ORTHO05D008364 1.1e-31 141.4 273 39.6
CiPaw.08G125100 Carya illinoinensis HOM05D000547 ORTHO05D008364 1.8e-31 140.6 278 37.1
QL03p024887 Quercus lobata HOM05D000547 ORTHO05D008364 2.4e-31 140.2 282 39.0
Glyma.03G246000 Glycine max HOM05D000547 ORTHO05D008364 3.1e-31 139.8 277 37.5
Haze_04341 Corylus avellana HOM05D000547 ORTHO05D008364 4.1e-31 139.4 271 36.9
Sed0010292 Sechium edule HOM05D000547 ORTHO05D008364 4.1e-31 139.4 282 37.6
CSS0025542 Camellia sinensis var. sinensis HOM05D000547 ORTHO05D008364 5.3e-31 139.0 270 38.5
Actinidia30935 Actinidia chinensis HOM05D000547 ORTHO05D008364 1.5e-30 137.5 269 37.2
MD04G1221900 Malus domestica HOM05D000547 ORTHO05D008364 1.5e-30 137.5 278 37.8
Glyma.10G161200 Glycine max HOM05D000547 ORTHO05D008364 2.0e-30 137.1 274 37.6
Rhsim10G0109000 Rhododendron simsii HOM05D000547 ORTHO05D008364 2.6e-30 136.7 271 39.5
Sabra13G0036500 Salix brachista HOM05D000547 ORTHO05D008364 4.5e-30 136.0 283 37.5
TPR.G30945 Trifolium pratense HOM05D000547 ORTHO05D008364 4.5e-30 136.0 270 35.2
Lj5g0020117 Lotus japonicus HOM05D000547 ORTHO05D008364 5.9e-30 135.6 270 37.4
RcHm_v2.0_Chr3g0451801 Rosa chinensis HOM05D000547 ORTHO05D008364 1.0e-29 134.8 271 37.3
Lj7P488T30 Lonicera japonica HOM05D000547 ORTHO05D008364 1.3e-29 134.4 272 40.4
Aqoxy2G03445 Aquilegia oxysepala HOM05D000547 ORTHO05D008364 2.2e-29 133.7 278 37.1
THA.LOC104818638 Tarenaya hassleriana HOM05D000547 ORTHO05D008364 2.2e-29 133.7 286 36.4
Ca_10051_v3 Cicer arietinum L. HOM05D000547 ORTHO05D008364 2.9e-29 133.3 270 36.3
MD12G1238000 Malus domestica HOM05D000547 ORTHO05D008364 6.5e-29 132.1 277 36.5
arahy.Tifrunner.gnm1.ann1.192FJ1 Arachis hypogaea HOM05D000547 ORTHO05D008364 8.5e-29 131.7 270 35.9
Lj1g0015081 Lotus japonicus HOM05D000547 ORTHO05D008364 8.5e-29 131.7 293 37.9
AT5G28300 Arabidopsis thaliana HOM05D000547 ORTHO05D008364 1.9e-28 130.6 273 35.2
Eucgr.H04383 Eucalyptus grandis HOM05D000547 ORTHO05D008364 9.4e-28 128.3 294 35.0
Sp2g20210 Schrenkiella parvula HOM05D000547 ORTHO05D008364 9.4e-28 128.3 273 37.4
DCAR_029723 Daucus carota HOM05D000547 ORTHO05D008364 1.2e-27 127.9 270 32.6
BcaNung01731 Brassica carinata HOM05D000547 ORTHO05D008364 1.6e-27 127.5 279 34.8
AL6G40500 Arabidopsis lyrata HOM05D000547 ORTHO05D008364 2.7e-27 126.7 273 33.7
Oeu038428.2 Olea europaea HOM05D000547 ORTHO05D008364 2.3e-26 123.6 270 37.0
PGR004G0039 Punica granatum HOM05D000547 ORTHO05D008364 2.3e-26 123.6 270 34.1
arahy.Tifrunner.gnm1.ann1.708L2Y Arachis hypogaea HOM05D000547 ORTHO05D008364 3.0e-26 123.2 270 35.2
BraA06t26706Z Brassica rapa HOM05D000547 ORTHO05D008364 3.0e-26 123.2 277 33.9
TAR365G0141 Trochodendron aralioides HOM05D000547 ORTHO05D008364 1.5e-25 120.9 281 34.2
Thhalv10003841m.g Eutrema salsugineum HOM05D000547 ORTHO05D008364 2.0e-25 120.6 278 35.3
A06p37880 Brassica napus HOM05D000547 ORTHO05D008364 3.3e-25 119.8 278 33.5
Cc02_g31850 Coffea canephora HOM05D000547 ORTHO05D008364 3.3e-25 119.8 270 34.4
CARHR185100 Cardamine hirsuta HOM05D000547 ORTHO05D008364 7.4e-25 118.6 291 33.3
BcaC03g17762 Brassica carinata HOM05D000547 ORTHO05D008364 9.7e-25 118.2 275 35.3
A02p38430 Brassica napus HOM05D000547 ORTHO05D008364 9.7e-25 118.2 277 33.9
C02p57760 Brassica napus HOM05D000547 ORTHO05D008364 9.7e-25 118.2 275 35.3
BolC2t11848H Brassica oleracea HOM05D000547 ORTHO05D008364 9.7e-25 118.2 275 35.3
BraA02t08822Z Brassica rapa HOM05D000547 ORTHO05D008364 9.7e-25 118.2 277 33.9
C07p40360 Brassica napus HOM05D000547 ORTHO05D008364 1.3e-24 117.9 275 33.5
BcaNung02090 Brassica carinata HOM05D000547 ORTHO05D008364 2.2e-24 117.1 279 33.7
BolC7t44570H Brassica oleracea HOM05D000547 ORTHO05D008364 2.2e-24 117.1 279 33.7
GSVIVG01021832001 Vitis vinifera HOM05D000547 ORTHO05D008364 2.2e-24 117.1 270 34.1
MELO3C024673.2 Cucumis melo HOM05D000547 ORTHO05D008364 3.7e-24 116.3 251 34.3
Aa31LG11G8740 Aethionema arabicum HOM05D000547 ORTHO05D008364 1.8e-23 114.0 277 32.5
Nn1g02416 Nelumbo nucifera HOM05D000547 ORTHO05D008364 6.9e-23 112.1 274 33.9
CsaV3_UNG002050 Cucumis sativus L. HOM05D000547 ORTHO05D008364 4.5e-22 109.4 270 31.9
TAR636G3043 Trochodendron aralioides HOM05D000547 ORTHO05D008364 1.0e-21 108.2 270 33.0
TAR362G1129 Trochodendron aralioides HOM05D000547 ORTHO05D008364 1.3e-21 107.8 283 30.7
CANSAT54G0879 Cannabis sativa HOM05D000547 ORTHO05D008364 1.7e-21 107.5 283 32.2
arahy.Tifrunner.gnm1.ann1.UGYE5Q Arachis hypogaea HOM05D000547 ORTHO05D008364 2.2e-21 107.1 271 32.5
Ca_09412_v3 Cicer arietinum L. HOM05D000547 ORTHO05D008364 2.2e-21 107.1 295 31.2
BcaB07g34183 Brassica carinata HOM05D000547 ORTHO05D008364 3.8e-21 106.3 278 33.8
Nn6g34144 Nelumbo nucifera HOM05D000547 ORTHO05D008364 3.8e-21 106.3 280 32.9
TWI56G0041 Tripterygium wilfordii HOM05D000547 ORTHO05D008364 3.8e-21 106.3 282 31.6
Lalb_Chr21g0310931 Lupinus albus HOM05D000547 ORTHO05D008364 1.9e-20 104.0 270 31.1
PSO170G6830 Papaver somniferum HOM05D000547 ORTHO05D008364 2.5e-20 103.6 276 31.2
arahy.Tifrunner.gnm1.ann1.FP0NYE Arachis hypogaea HOM05D000547 ORTHO05D008364 3.2e-20 103.2 271 31.7
TPR.G7009 Trifolium pratense HOM05D000547 ORTHO05D008364 2.1e-19 100.5 272 32.0
Migut.B01075 Erythranthe guttata HOM05D000547 ORTHO05D008364 5.1e-18 95.9 277 32.5
Medtr7g114860 Medicago truncatula HOM05D000547 ORTHO05D008364 5.1e-18 95.9 272 29.4
Carub.0006s2570 Capsella rubella HOM05D000547 ORTHO05D008364 1.5e-17 94.4 277 30.7
PSO210G7025 Papaver somniferum HOM05D000547 ORTHO05D008364 1.7e-16 90.9 276 29.7
Psat6g146880 Pisum sativum HOM05D000547 ORTHO05D008364 2.2e-16 90.5 91 57.1
ECA240G1583 Erigeron canadensis HOM05D000547 ORTHO05D008364 1.8e-15 87.4 270 27.0
Atru.chr2.789 Acer truncatum HOM05D000547 ORTHO05D008364 3.8e-13 79.7 63 58.7
Sabra05G0045500 Salix brachista HOM05D000547 ORTHO05D008364 3.8e-13 79.7 162 37.7
Atru.chr2.790 Acer truncatum HOM05D000547 ORTHO05D008364 5.0e-13 79.3 67 55.2
Lsat_1_v5_gn_3_137960 Lactuca sativa HOM05D000547 ORTHO05D008364 5.5e-12 75.9 280 28.2
HanXRQChr06g0167061 Helianthus annuus HOM05D000547 ORTHO05D008364 9.4e-12 75.1 155 35.5
MELO3C005815.2 Cucumis melo HOM05D000547 ORTHO05D000756 3.6e-11 73.2 270 26.7
CsaV3_1G045640 Cucumis sativus L. HOM05D000547 ORTHO05D008364 4.7e-11 72.8 81 44.4
Cpa.g.sc117.75 Carica papaya HOM05D000547 ORTHO05D008364 8.0e-11 72.0 53 64.2
CsaV3_5G001320 Cucumis sativus L. HOM05D000547 ORTHO05D000756 4.0e-10 69.7 270 26.3
Gohir.A02G094200 Gossypium hirsutum HOM05D000547 ORTHO05D000756 4.0e-10 69.7 273 26.7
MSTRG.24885 Avicennia marina HOM05D000547 ORTHO05D000756 8.8e-10 68.6 272 25.4
CDE12G0868 Ceratophyllum demersum HOM05D000547 ORTHO05D000756 8.8e-10 68.6 270 27.8
Psat3g008000 Pisum sativum HOM05D000547 ORTHO05D008364 2.0e-09 67.4 273 26.7
Potri.001G454500 Populus trichocarpa HOM05D000547 ORTHO05D000756 2.0e-09 67.4 271 27.3
Ca_06091_v3 Cicer arietinum L. HOM05D000547 ORTHO05D000756 2.6e-09 67.0 270 25.9
CDE04G1799 Ceratophyllum demersum HOM05D000547 ORTHO05D000756 4.4e-09 66.2 270 27.8
ClCG01G001200 Citrullus lanatus HOM05D000547 ORTHO05D000756 7.5e-09 65.5 270 25.6
HPP92_012643 Vanilla planifolia HOM05D000547 ORTHO05D000756 1.7e-08 64.3 270 25.2
ATR0665G277 Amborella trichopoda HOM05D000547 ORTHO05D000756 2.8e-08 63.5 273 24.9
PGR031G3831 Punica granatum HOM05D000547 ORTHO05D000756 1.1e-07 61.6 275 24.4
Sed0022401 Sechium edule HOM05D000547 ORTHO05D000756 1.1e-07 61.6 262 25.2
CAN.G249.13 Capsicum annuum HOM05D000547 ORTHO05D000756 1.4e-07 61.2 270 24.4
Potri.011G147400 Populus trichocarpa HOM05D000547 ORTHO05D000756 1.4e-07 61.2 279 26.5
TWI15G1212 Tripterygium wilfordii HOM05D000547 ORTHO05D000756 1.4e-07 61.2 270 25.9
Manes.01G001900 Manihot esculenta HOM05D000547 ORTHO05D000756 2.4e-07 60.5 270 25.6
FAN13G0248 Fragaria x ananassa HOM05D000547 ORTHO05D000756 3.1e-07 60.1 262 25.6
MBI11_g09065_MAGBIO Magnolia biondii HOM05D000547 ORTHO05D000756 3.1e-07 60.1 270 25.6
arahy.Tifrunner.gnm1.ann1.6ZR463 Arachis hypogaea HOM05D000547 ORTHO05D000756 4.1e-07 59.7 71 42.3
arahy.Tifrunner.gnm1.ann1.IGA88J Arachis hypogaea HOM05D000547 ORTHO05D000756 4.1e-07 59.7 71 42.3
Nitab4.5_0005705g0010 Nicotiana tabacum HOM05D000547 ORTHO05D000756 4.1e-07 59.7 270 25.9
Gohir.D03G089200 Gossypium hirsutum HOM05D000547 ORTHO05D000756 5.3e-07 59.3 270 25.6
Gorai.003G072300 Gossypium raimondii HOM05D000547 ORTHO05D000756 5.3e-07 59.3 270 25.6
Actinidia25395 Actinidia chinensis HOM05D000547 ORTHO05D000756 7.0e-07 58.9 70 42.9
Actinidia29527 Actinidia chinensis HOM05D000547 ORTHO05D000756 7.0e-07 58.9 70 42.9
Medtr1g098900 Medicago truncatula HOM05D000547 ORTHO05D000756 7.0e-07 58.9 273 26.4
Aa31LG4G6920 Aethionema arabicum HOM05D000547 ORTHO05D000756 1.2e-06 58.2 61 52.5
Solyc11g005380.2 Solanum lycopersicum HOM05D000547 ORTHO05D000756 1.2e-06 58.2 270 25.6
CAN.G268.12 Capsicum annuum HOM05D000547 ORTHO05D000756 1.6e-06 57.8 71 42.3
Peaxi162Scf00025g02322 Petunia axillaris HOM05D000547 ORTHO05D000756 2.0e-06 57.4 67 44.8
Sabra16G0307400 Salix brachista HOM05D000547 ORTHO05D000756 2.0e-06 57.4 270 25.6
Sopen11g001390 Solanum pennellii HOM05D000547 ORTHO05D000756 2.0e-06 57.4 270 25.2
Cfa011872 Carpinus fangiana HOM05D000547 ORTHO05D000756 2.7e-06 57.0 276 24.3
Dinv25860 Davidia involucrata HOM05D000547 ORTHO05D000756 2.7e-06 57.0 70 42.9
Glyma.02G082100 Glycine max HOM05D000547 ORTHO05D000756 2.7e-06 57.0 72 41.7
Manes.18G091600 Manihot esculenta HOM05D000547 ORTHO05D000756 3.5e-06 56.6 92 38.0
A07p28290 Brassica napus HOM05D000547 ORTHO05D000756 4.5e-06 56.2 61 50.8
BraA07t30468Z Brassica rapa HOM05D000547 ORTHO05D000756 4.5e-06 56.2 61 50.8
Glyma.04G216100 Glycine max HOM05D000547 ORTHO05D000756 4.5e-06 56.2 270 23.3
Glyma.06G149900 Glycine max HOM05D000547 ORTHO05D000756 4.5e-06 56.2 270 23.7
Sabra19G0018700 Salix brachista HOM05D000547 ORTHO05D000756 4.5e-06 56.2 270 24.1
Sabra19G0023400 Salix brachista HOM05D000547 ORTHO05D000756 4.5e-06 56.2 274 24.5
arahy.Tifrunner.gnm1.ann1.K6EU4R Arachis hypogaea HOM05D000547 ORTHO05D000756 5.9e-06 55.8 69 43.5
arahy.Tifrunner.gnm1.ann1.WDZX9F Arachis hypogaea HOM05D000547 ORTHO05D000756 5.9e-06 55.8 69 43.5
CANSAT01G1955 Cannabis sativa HOM05D000547 ORTHO05D000756 5.9e-06 55.8 266 23.3
Haze_09236 Corylus avellana HOM05D000547 ORTHO05D000756 5.9e-06 55.8 270 24.1
Glyma.10G225200 Glycine max HOM05D000547 ORTHO05D000756 5.9e-06 55.8 70 40.0
Glyma.20G166600 Glycine max HOM05D000547 ORTHO05D000756 5.9e-06 55.8 70 40.0
HanXRQChr05g0161901 Helianthus annuus HOM05D000547 ORTHO05D000756 5.9e-06 55.8 70 41.4
Lsat_1_v5_gn_6_99141 Lactuca sativa HOM05D000547 ORTHO05D000756 5.9e-06 55.8 70 41.4
Lj5g0000544 Lotus japonicus HOM05D000547 ORTHO05D000756 5.9e-06 55.8 274 23.7
PGSC0003DMG400003964 Solanum tuberosum HOM05D000547 ORTHO05D000756 5.9e-06 55.8 278 23.7
VMungo0720G2439 Vigna mungo HOM05D000547 ORTHO05D000756 5.9e-06 55.8 70 40.0
ATR0772G198 Amborella trichopoda HOM05D000547 ORTHO05D000756 7.7e-06 55.5 96 35.4
Cc08_g01240 Coffea canephora HOM05D000547 ORTHO05D000756 7.7e-06 55.5 273 24.5
Duzib116G0475 Durio zibethinus HOM05D000547 ORTHO05D000756 7.7e-06 55.5 70 42.9
FAN04G2367 Fragaria x ananassa HOM05D000547 ORTHO05D000756 7.7e-06 55.5 262 25.6
Gohir.A01G197900 Gossypium hirsutum HOM05D000547 ORTHO05D000756 7.7e-06 55.5 70 42.9
Nitab4.5_0002064g0010 Nicotiana tabacum HOM05D000547 ORTHO05D000756 7.7e-06 55.5 104 31.7
Sabra05G0146600 Salix brachista HOM05D000547 ORTHO05D000756 7.7e-06 55.5 67 43.3
TAR381G0236 Trochodendron aralioides HOM05D000547 ORTHO05D000756 7.7e-06 55.5 72 37.5


User provided reference genes

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