Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62044648 Chenopodium quinoa HOM05D004670 ORTHO05D008020 1.7e-217 759.2 426 100.0
AUR62025405 Chenopodium quinoa HOM05D004670 ORTHO05D008020 5.1e-198 694.5 404 88.6
AUR62008838 Chenopodium quinoa HOM05D004670 ORTHO05D008020 6.0e-191 671.0 377 91.5
EL10Ac7g17697 Beta vulgaris HOM05D004670 ORTHO05D008020 2.1e-143 513.1 414 66.7
EL10Ac4g10032 Beta vulgaris HOM05D004670 ORTHO05D008020 2.8e-140 502.7 406 66.0
AUR62000265 Chenopodium quinoa HOM05D004670 ORTHO05D008020 1.0e-137 494.2 385 72.2
Ah.06g195210 Amaranthus hybridus HOM05D004670 ORTHO05D008020 5.5e-136 488.4 394 64.2
Sc16g0010690 Simmondsia chinensis HOM05D004670 ORTHO05D008020 8.9e-102 374.8 401 52.6
Dinv17145 Davidia involucrata HOM05D004670 ORTHO05D008020 3.6e-95 352.8 362 53.0
Haze_12758 Corylus avellana HOM05D004670 ORTHO05D008020 5.1e-89 332.4 272 59.6
Lj8P583T10 Lonicera japonica HOM05D004670 ORTHO05D008020 6.6e-89 332.0 276 60.1
Haze_20607 Corylus avellana HOM05D004670 ORTHO05D008020 4.3e-88 329.3 271 59.4
CSS0027504 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 7.3e-88 328.6 413 47.2
CSS0030730 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 7.3e-88 328.6 413 47.2
CiPaw.07G084800 Carya illinoinensis HOM05D004670 ORTHO05D008020 2.1e-87 327.0 407 46.4
QL10p048429 Quercus lobata HOM05D004670 ORTHO05D008020 3.6e-87 326.2 371 50.4
TWI18G1064 Tripterygium wilfordii HOM05D004670 ORTHO05D008020 1.4e-86 324.3 436 43.3
TAR362G1162 Trochodendron aralioides HOM05D004670 ORTHO05D008020 3.1e-86 323.2 396 46.2
Cfa014310 Carpinus fangiana HOM05D004670 ORTHO05D008020 6.8e-86 322.0 272 58.5
Rhsim05G0163600 Rhododendron simsii HOM05D004670 ORTHO05D008020 3.4e-85 319.7 338 50.9
Atru.chr2.211 Acer truncatum HOM05D004670 ORTHO05D008020 5.8e-85 318.9 384 46.4
QL10p044086 Quercus lobata HOM05D004670 ORTHO05D008020 1.7e-84 317.4 293 56.0
Nn1g09528 Nelumbo nucifera HOM05D004670 ORTHO05D008020 8.4e-84 315.1 333 49.8
Prupe.6G365500 Prunus persica HOM05D004670 ORTHO05D008020 2.7e-82 310.1 304 54.9
Manes.13G000200 Manihot esculenta HOM05D004670 ORTHO05D008020 1.0e-81 308.1 270 55.6
Thecc.06G195000 Theobroma cacao HOM05D004670 ORTHO05D008020 2.3e-81 307.0 342 47.4
Gorai.013G250400 Gossypium raimondii HOM05D004670 ORTHO05D008020 9.6e-80 301.6 363 47.4
MBI07_g36706_MAGBIO Magnolia biondii HOM05D004670 ORTHO05D008020 9.6e-80 301.6 336 50.0
Sabra16G0238400 Salix brachista HOM05D004670 ORTHO05D008020 9.6e-80 301.6 380 46.3
Gohir.A13G215800 Gossypium hirsutum HOM05D004670 ORTHO05D008020 2.1e-79 300.4 362 46.4
MD00G1017000 Malus domestica HOM05D004670 ORTHO05D008020 1.1e-78 298.1 380 47.6
Potri.001G361500 Populus trichocarpa HOM05D004670 ORTHO05D008020 1.1e-78 298.1 380 45.5
Nitab4.5_0001348g0230 Nicotiana tabacum HOM05D004670 ORTHO05D008020 1.4e-78 297.7 348 48.6
SGA_v2.0_scaffold52G18920 Striga asiatica HOM05D004670 ORTHO05D008020 1.4e-78 297.7 373 44.8
Gohir.D13G219500 Gossypium hirsutum HOM05D004670 ORTHO05D008020 2.4e-78 297.0 363 46.8
Duzib150G0183 Durio zibethinus HOM05D004670 ORTHO05D008020 3.1e-78 296.6 343 46.9
Psat5g107920 Pisum sativum HOM05D004670 ORTHO05D008020 3.1e-78 296.6 389 45.0
Nitab4.5_0008751g0030 Nicotiana tabacum HOM05D004670 ORTHO05D008020 3.4e-77 293.1 392 44.6
CANSAT54G2504 Cannabis sativa HOM05D004670 ORTHO05D008020 7.6e-77 292.0 389 44.7
PGSC0003DMG400006026 Solanum tuberosum HOM05D004670 ORTHO05D008020 7.6e-77 292.0 393 44.5
Solyc11g005140.1 Solanum lycopersicum HOM05D004670 ORTHO05D008020 9.9e-77 291.6 373 44.2
Sopen11g001140 Solanum pennellii HOM05D004670 ORTHO05D008020 1.3e-76 291.2 387 45.5
Aqoxy3G03703 Aquilegia oxysepala HOM05D004670 ORTHO05D008020 1.7e-76 290.8 272 51.8
Eucgr.B01443 Eucalyptus grandis HOM05D004670 ORTHO05D008020 1.7e-76 290.8 273 50.9
Phvul.008G212400 Phaseolus vulgaris HOM05D004670 ORTHO05D008020 1.7e-76 290.8 272 51.8
MSTRG.25359 Avicennia marina HOM05D004670 ORTHO05D008020 3.8e-76 289.7 359 46.5
Eucgr.L01231 Eucalyptus grandis HOM05D004670 ORTHO05D008020 4.9e-76 289.3 272 50.7
CAN.G716.1 Capsicum annuum HOM05D004670 ORTHO05D008020 8.4e-76 288.5 286 51.0
Lsat_1_v5_gn_7_7580 Lactuca sativa HOM05D004670 ORTHO05D008020 1.9e-75 287.3 362 46.7
Glyma.15G017400 Glycine max HOM05D004670 ORTHO05D008020 5.4e-75 285.8 272 51.8
Sed0002677 Sechium edule HOM05D004670 ORTHO05D008020 5.4e-75 285.8 390 43.1
PGR119G2020 Punica granatum HOM05D004670 ORTHO05D008020 1.2e-74 284.6 274 52.2
Migut.C01066 Erythranthe guttata HOM05D004670 ORTHO05D008020 2.7e-74 283.5 395 42.8
Glyma.13G356700 Glycine max HOM05D004670 ORTHO05D008020 3.5e-74 283.1 351 45.3
SalBow7G4343 Salvia bowleyana HOM05D004670 ORTHO05D008020 3.5e-74 283.1 262 52.7
HanXRQChr16g0532601 Helianthus annuus HOM05D004670 ORTHO05D008020 4.6e-74 282.7 380 46.1
COL.COLO4_09284 Corchorus olitorius HOM05D004670 ORTHO05D008020 1.0e-73 281.6 269 52.4
SalBow7G3652 Salvia bowleyana HOM05D004670 ORTHO05D008020 1.7e-73 280.8 262 52.3
VMungo0647G0492 Vigna mungo HOM05D004670 ORTHO05D008020 3.0e-73 280.0 351 45.3
ECA236G4653 Erigeron canadensis HOM05D004670 ORTHO05D008020 5.1e-73 279.3 329 49.2
HanXRQChr02g0056371 Helianthus annuus HOM05D004670 ORTHO05D008020 6.6e-73 278.9 363 48.5
Ca_16311_v3 Cicer arietinum L. HOM05D004670 ORTHO05D008020 1.1e-72 278.1 389 42.4
CDE06G0776 Ceratophyllum demersum HOM05D004670 ORTHO05D008020 1.9e-72 277.3 371 41.5
Oeu040399.1 Olea europaea HOM05D004670 ORTHO05D008020 1.9e-72 277.3 382 43.5
CsaV3_2G010440 Cucumis sativus L. HOM05D004670 ORTHO05D008020 1.3e-71 274.6 382 43.7
MELO3C008575.2 Cucumis melo HOM05D004670 ORTHO05D008020 1.6e-71 274.2 382 43.7
Ciclev10004046m.g Citrus clementina HOM05D004670 ORTHO05D008020 2.1e-71 273.9 369 42.8
Cc10_g12810 Coffea canephora HOM05D004670 ORTHO05D008020 4.8e-71 272.7 302 50.0
ECA246G0724 Erigeron canadensis HOM05D004670 ORTHO05D008020 6.2e-71 272.3 353 47.0
Peaxi162Scf00066g00021 Petunia axillaris HOM05D004670 ORTHO05D008020 8.1e-71 271.9 374 44.7
PSO017G2252 Papaver somniferum HOM05D004670 ORTHO05D008020 1.4e-70 271.2 407 38.8
TPR.G23340 Trifolium pratense HOM05D004670 ORTHO05D008020 4.0e-70 269.6 393 42.5
Medtr3g081310 Medicago truncatula HOM05D004670 ORTHO05D008020 6.9e-70 268.9 352 44.6
RcHm_v2.0_Chr2g0131651 Rosa chinensis HOM05D004670 ORTHO05D008020 4.5e-69 266.2 372 43.8
Lj2g0025819 Lotus japonicus HOM05D004670 ORTHO05D008020 8.4e-68 261.9 390 41.3
FAN14G3835 Fragaria x ananassa HOM05D004670 ORTHO05D008020 1.1e-67 261.5 386 40.9
BNapus_Darmor_BZH_scaffold_122p00150 Brassica napus HOM05D004670 ORTHO05D008020 1.9e-67 260.8 378 41.3
THA.LOC104827168 Tarenaya hassleriana HOM05D004670 ORTHO05D008020 2.4e-67 260.4 292 46.9
BNapus_Darmor_BZH_scaffold_99p00180 Brassica napus HOM05D004670 ORTHO05D008020 3.2e-67 260.0 387 40.8
FvH4_6g27990 Fragaria vesca HOM05D004670 ORTHO05D008020 5.4e-67 259.2 386 40.7
SHI13694 Sapria himalayana HOM05D004670 ORTHO05D008020 5.4e-67 259.2 299 45.2
ATR0743G160 Amborella trichopoda HOM05D004670 ORTHO05D008020 7.1e-67 258.8 368 40.2
DCAR_024376 Daucus carota HOM05D004670 ORTHO05D008020 9.3e-67 258.5 395 41.8
BolC1t05888H Brassica oleracea HOM05D004670 ORTHO05D008020 1.0e-65 255.0 388 41.5
Sp3g01690 Schrenkiella parvula HOM05D004670 ORTHO05D008020 1.0e-65 255.0 390 39.7
arahy.Tifrunner.gnm1.ann1.H9JUXY Arachis hypogaea HOM05D004670 ORTHO05D008020 3.9e-65 253.1 375 39.7
AUR62006613 Chenopodium quinoa HOM05D004670 ORTHO05D008020 5.1e-65 252.7 315 50.5
Thhalv10020352m.g Eutrema salsugineum HOM05D004670 ORTHO05D008020 5.1e-65 252.7 391 41.2
AT3G02650 Arabidopsis thaliana HOM05D004670 ORTHO05D008020 6.7e-65 252.3 382 41.4
PSO675G7837 Papaver somniferum HOM05D004670 ORTHO05D008020 6.7e-65 252.3 403 39.5
THA.LOC104802429 Tarenaya hassleriana HOM05D004670 ORTHO05D008020 1.9e-64 250.8 301 45.2
Carub.0003s0177 Capsella rubella HOM05D004670 ORTHO05D008020 3.3e-64 250.0 394 40.1
CARHR076670 Cardamine hirsuta HOM05D004670 ORTHO05D008020 2.8e-63 246.9 371 41.5
AL3G12030 Arabidopsis lyrata HOM05D004670 ORTHO05D008020 8.1e-63 245.4 403 40.4
BraSC246t45824Z Brassica rapa HOM05D004670 ORTHO05D008020 9.0e-62 241.9 385 39.5
TPR.G9216 Trifolium pratense HOM05D004670 ORTHO05D008020 3.4e-61 240.0 326 42.9
A03p33060 Brassica napus HOM05D004670 ORTHO05D008020 6.4e-60 235.7 386 40.7
BraA03t12476Z Brassica rapa HOM05D004670 ORTHO05D008020 3.2e-59 233.4 386 40.4
Lalb_Chr13g0290441 Lupinus albus HOM05D004670 ORTHO05D008020 2.3e-57 227.3 338 38.8
C03p40240 Brassica napus HOM05D004670 ORTHO05D008020 8.7e-57 225.3 335 42.1
BcaC01g04430 Brassica carinata HOM05D004670 ORTHO05D008020 2.5e-56 223.8 373 40.5
BolC3t16289H Brassica oleracea HOM05D004670 ORTHO05D008020 2.5e-56 223.8 373 40.5
HPP92_012838 Vanilla planifolia HOM05D004670 ORTHO05D008020 4.8e-55 219.5 326 40.8
BcaB04g19393 Brassica carinata HOM05D004670 ORTHO05D008020 6.2e-55 219.2 368 39.1
Dinv17144 Davidia involucrata HOM05D004670 ORTHO05D008020 2.0e-53 214.2 260 43.5
Cpa.g.sc127.45 Carica papaya HOM05D004670 ORTHO05D008020 2.5e-48 197.2 338 37.9
Lj6g0018960 Lotus japonicus HOM05D004670 ORTHO05D008020 1.1e-46 191.8 377 37.4
AUR62008837 Chenopodium quinoa HOM05D004670 ORTHO05D008020 2.4e-46 190.7 302 45.7
PGR119G2157 Punica granatum HOM05D004670 ORTHO05D008020 1.0e-44 185.3 270 40.7
Zm00001eb144640 Zea mays HOM05D004670 ORTHO05D008020 3.0e-41 173.7 259 37.5
CSS0025547 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 3.9e-41 173.3 272 40.1
Thecc.09G224400 Theobroma cacao HOM05D004670 ORTHO05D008020 6.9e-38 162.5 271 39.9
SEGI_06910 Sequoiadendron giganteum HOM05D004670 ORTHO05D008020 3.3e-32 143.7 351 25.9
Medtr5g092030 Medicago truncatula HOM05D004670 ORTHO05D014137 1.1e-24 118.6 291 30.9
Cpa.g.sc35.62 Carica papaya HOM05D004670 ORTHO05D022223 7.4e-24 115.9 173 39.3
TPR.G5228 Trifolium pratense HOM05D002798 ORTHO05D003052 3.1e-22 110.5 267 31.1
TPR.G17089 Trifolium pratense HOM05D004670 ORTHO05D014137 3.5e-21 107.1 272 30.5
TPR.G25089 Trifolium pratense HOM05D004670 ORTHO05D014137 1.3e-20 105.1 261 31.0
Medtr8g105355 Medicago truncatula HOM05D004670 ORTHO05D014137 1.5e-16 91.7 143 38.5
Medtr8g105450 Medicago truncatula HOM05D004670 ORTHO05D014137 1.5e-16 91.7 143 38.5
Medtr5g088900 Medicago truncatula HOM05D004670 ORTHO05D014137 4.8e-15 86.7 188 29.8
TPR.G5188 Trifolium pratense HOM05D004670 ORTHO05D008020 7.0e-14 82.8 151 34.4
PGSC0003DMG400024629 Solanum tuberosum HOM05D005362 ORTHO05D006895 6.5e-12 76.3 320 24.4
Medtr1g102600 Medicago truncatula HOM05D004670 ORTHO05D266903 4.2e-11 73.6 129 34.1
CANSAT54G2964 Cannabis sativa HOM05D007661 ORTHO05D009671 1.4e-09 68.6 182 22.5
Rhsim12G0149500 Rhododendron simsii HOM05D005362 ORTHO05D006895 1.4e-09 68.6 248 26.6
Rhsim12G0149700 Rhododendron simsii HOM05D005362 ORTHO05D006895 1.4e-09 68.6 248 26.6
Medtr5g095780 Medicago truncatula HOM05D004670 ORTHO05D008020 2.3e-09 67.8 66 47.0
C09p70390 Brassica napus HOM05D006596 ORTHO05D008497 3.0e-09 67.4 272 21.7
Actinidia33408 Actinidia chinensis HOM05D000424 ORTHO05D000355 5.2e-09 66.6 186 26.9
Lsat_1_v5_gn_5_23641 Lactuca sativa HOM05D005362 ORTHO05D006895 1.5e-08 65.1 305 23.6
TPR.G10813 Trifolium pratense HOM05D004670 ORTHO05D008020 1.5e-08 65.1 70 42.9
AL6G29620 Arabidopsis lyrata HOM05D007661 ORTHO05D009671 2.0e-08 64.7 167 24.6
AT5G18390 Arabidopsis thaliana HOM05D007661 ORTHO05D009671 2.6e-08 64.3 167 24.6
Solyc03g114920.1 Solanum lycopersicum HOM05D005362 ORTHO05D006895 2.6e-08 64.3 360 23.3
DCAR_027464 Daucus carota HOM05D005622 ORTHO05D002854 3.4e-08 63.9 297 20.2
Oeu062029.1 Olea europaea HOM05D006232 ORTHO05D007746 4.4e-08 63.5 194 25.8
Sopen03g034000 Solanum pennellii HOM05D005362 ORTHO05D006895 4.4e-08 63.5 301 23.3
Carub.0006s1665 Capsella rubella HOM05D007661 ORTHO05D009671 5.7e-08 63.2 167 24.0
Atru.BG.180.p Acer truncatum HOM05D006503 ORTHO05D008116 7.5e-08 62.8 181 28.7
Manes.07G094000 Manihot esculenta HOM05D006232 ORTHO05D007746 1.3e-07 62.0 150 28.7
Manes.09G145300 Manihot esculenta HOM05D007661 ORTHO05D009671 1.3e-07 62.0 179 22.3
Potri.019G025700 Populus trichocarpa HOM05D007661 ORTHO05D009671 2.2e-07 61.2 182 24.2
Thhalv10012543m.g Eutrema salsugineum HOM05D006596 ORTHO05D008497 2.8e-07 60.8 226 21.2
Aa31sc52G230 Aethionema arabicum HOM05D006596 ORTHO05D008497 6.3e-07 59.7 179 22.3
AL3G18590 Arabidopsis lyrata HOM05D008810 ORTHO05D010971 6.3e-07 59.7 231 21.6
Cpa.g.c31883 Carica papaya HOM05D004670 ORTHO05D022223 6.3e-07 59.7 102 37.3
CsaV3_6G032540 Cucumis sativus L. HOM05D005622 ORTHO05D002854 8.3e-07 59.3 279 21.5
MBI06_g05054_MAGBIO Magnolia biondii HOM05D005362 ORTHO05D006895 1.1e-06 58.9 211 24.6
Aqoxy3G03779 Aquilegia oxysepala HOM05D006232 ORTHO05D007746 1.4e-06 58.5 150 27.3
Actinidia23019 Actinidia chinensis HOM05D006232 ORTHO05D007746 4.1e-06 57.0 161 26.7
MELO3C011426.2 Cucumis melo HOM05D005622 ORTHO05D002854 4.1e-06 57.0 279 20.8
Actinidia00227 Actinidia chinensis HOM05D006080 ORTHO05D007382 5.4e-06 56.6 163 28.8
arahy.Tifrunner.gnm1.ann1.TA9010 Arachis hypogaea HOM05D000424 ORTHO05D000355 5.4e-06 56.6 137 25.5
Cpa.g.sc209.39 Carica papaya HOM05D004670 ORTHO05D022223 5.4e-06 56.6 117 32.5
HanXRQChr12g0375311 Helianthus annuus HOM05D005622 ORTHO05D002854 5.4e-06 56.6 275 21.8
arahy.Tifrunner.gnm1.ann1.P9G8D9 Arachis hypogaea HOM05D000424 ORTHO05D000355 7.0e-06 56.2 137 26.3
Sp6g29030 Schrenkiella parvula HOM05D000424 ORTHO05D000355 7.0e-06 56.2 359 17.8
Atru.chr4.2419 Acer truncatum HOM05D000424 ORTHO05D000355 9.1e-06 55.8 164 25.6
Atru.ctg752_3.32 Acer truncatum HOM05D000424 ORTHO05D000355 9.1e-06 55.8 164 25.6
Aa31LG5G17860 Aethionema arabicum HOM05D008810 ORTHO05D010971 9.1e-06 55.8 218 22.0
PGR031G3623 Punica granatum HOM05D006819 ORTHO05D008763 9.1e-06 55.8 203 21.7


User provided reference genes

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