Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62044460 Chenopodium quinoa HOM05D004135 ORTHO05D137931 9.9e-86 320.1 162 100.0
AUR62000238 Chenopodium quinoa HOM05D000038 ORTHO05D000423 1.3e-29 133.7 88 78.4
EL10Ac8g19524 Beta vulgaris HOM05D004135 ORTHO05D005558 9.8e-09 64.3 32 93.8
AUR62011277 Chenopodium quinoa HOM05D004135 ORTHO05D138132 9.8e-09 64.3 32 93.8
AUR62027344 Chenopodium quinoa HOM05D004135 ORTHO05D005558 9.8e-09 64.3 32 93.8
AUR62042515 Chenopodium quinoa HOM05D004135 ORTHO05D005558 9.8e-09 64.3 32 93.8
TAR627G0684 Trochodendron aralioides HOM05D004135 ORTHO05D005558 9.8e-09 64.3 32 93.8
Duzib160G0522 Durio zibethinus HOM05D004135 ORTHO05D005558 1.7e-08 63.5 38 81.6
Duzib235G1539 Durio zibethinus HOM05D004135 ORTHO05D005558 1.7e-08 63.5 38 81.6
Eucgr.D01026 Eucalyptus grandis HOM05D004135 ORTHO05D005558 1.7e-08 63.5 38 81.6
Gohir.A05G111900 Gossypium hirsutum HOM05D004135 ORTHO05D005558 1.7e-08 63.5 38 81.6
Gohir.D05G112400 Gossypium hirsutum HOM05D004135 ORTHO05D005558 1.7e-08 63.5 38 81.6
Gorai.009G116600 Gossypium raimondii HOM05D004135 ORTHO05D005558 1.7e-08 63.5 38 81.6
Lj1A1156T44 Lonicera japonica HOM05D004135 ORTHO05D005558 1.7e-08 63.5 36 80.6
Potri.011G155800 Populus trichocarpa HOM05D004135 ORTHO05D005558 1.7e-08 63.5 38 81.6
Thecc.06G007200 Theobroma cacao HOM05D004135 ORTHO05D005558 1.7e-08 63.5 38 81.6
Thecc.06G007700 Theobroma cacao HOM05D004135 ORTHO05D005558 1.7e-08 63.5 38 81.6
TWI15G0841 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 1.7e-08 63.5 38 81.6
TWI81G0788 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 1.7e-08 63.5 38 81.6
Dinv04216 Davidia involucrata HOM05D004135 ORTHO05D005558 2.2e-08 63.2 32 90.6
Sabra11G0144000 Salix brachista HOM05D004135 ORTHO05D005558 2.2e-08 63.2 32 90.6
Ah.11g045310 Amaranthus hybridus HOM05D004135 ORTHO05D005558 2.8e-08 62.8 32 90.6
GSVIVG01021747001 Vitis vinifera HOM05D004135 ORTHO05D005558 2.8e-08 62.8 38 81.6
Actinidia25200 Actinidia chinensis HOM05D004135 ORTHO05D005558 3.7e-08 62.4 38 81.6
Actinidia31378 Actinidia chinensis HOM05D004135 ORTHO05D005558 3.7e-08 62.4 38 81.6
CSS0034299 Camellia sinensis var. sinensis HOM05D004135 ORTHO05D005558 3.7e-08 62.4 38 81.6
PSO541G2415 Papaver somniferum HOM05D004135 ORTHO05D005558 3.7e-08 62.4 32 90.6
PSO675G0864 Papaver somniferum HOM05D004135 ORTHO05D005558 3.7e-08 62.4 32 90.6
TAR629G2923 Trochodendron aralioides HOM05D004135 ORTHO05D005558 3.7e-08 62.4 32 90.6
Ciclev10016127m.g Citrus clementina HOM05D004135 ORTHO05D005558 4.9e-08 62.0 38 78.9
Gohir.A02G088700 Gossypium hirsutum HOM05D004135 ORTHO05D005558 4.9e-08 62.0 38 78.9
Gohir.D02G104900 Gossypium hirsutum HOM05D004135 ORTHO05D005558 4.9e-08 62.0 38 78.9
Gorai.005G119100 Gossypium raimondii HOM05D004135 ORTHO05D005558 4.9e-08 62.0 38 78.9
TWI38G0133 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 4.9e-08 62.0 38 78.9
vmacro10993 Vaccinium macrocarpon HOM05D004135 ORTHO05D005558 4.9e-08 62.0 32 90.6
Aa31LG6G11870 Aethionema arabicum HOM05D004135 ORTHO05D005558 6.3e-08 61.6 38 78.9
AL1G44690 Arabidopsis lyrata HOM05D004135 ORTHO05D005558 6.3e-08 61.6 38 78.9
AT1G30630 Arabidopsis thaliana HOM05D004135 ORTHO05D005558 6.3e-08 61.6 38 78.9
Carub.0001s2889 Capsella rubella HOM05D004135 ORTHO05D005558 6.3e-08 61.6 38 78.9
CARHR030110 Cardamine hirsuta HOM05D004135 ORTHO05D005558 6.3e-08 61.6 38 78.9
AUR62037847 Chenopodium quinoa HOM05D004135 ORTHO05D138341 6.3e-08 61.6 78 52.6
Thhalv10008349m.g Eutrema salsugineum HOM05D004135 ORTHO05D005558 6.3e-08 61.6 38 78.9
Sp1g26530 Schrenkiella parvula HOM05D004135 ORTHO05D005558 6.3e-08 61.6 38 78.9
CAN.G675.30 Capsicum annuum HOM05D004135 ORTHO05D005558 8.3e-08 61.2 38 78.9
Cpa.g.sc285.5 Carica papaya HOM05D004135 ORTHO05D005558 8.3e-08 61.2 38 78.9
Cfa000762 Carpinus fangiana HOM05D004135 ORTHO05D005558 8.3e-08 61.2 38 78.9
Manes.14G126900 Manihot esculenta HOM05D004135 ORTHO05D005558 8.3e-08 61.2 38 78.9
Nitab4.5_0001219g0030 Nicotiana tabacum HOM05D004135 ORTHO05D005558 8.3e-08 61.2 38 78.9
Nitab4.5_0012414g0010 Nicotiana tabacum HOM05D004135 ORTHO05D005558 8.3e-08 61.2 38 78.9
Peaxi162Scf00195g00518 Petunia axillaris HOM05D004135 ORTHO05D005558 8.3e-08 61.2 38 78.9
QL05p064858 Quercus lobata HOM05D004135 ORTHO05D005558 8.3e-08 61.2 38 78.9
Solyc02g069585.1 Solanum lycopersicum HOM05D004135 ORTHO05D005558 8.3e-08 61.2 38 78.9
Sopen02g018720 Solanum pennellii HOM05D004135 ORTHO05D005558 8.3e-08 61.2 38 78.9
PGSC0003DMG400021137 Solanum tuberosum HOM05D004135 ORTHO05D005558 8.3e-08 61.2 38 78.9
Lsat_1_v5_gn_1_86700 Lactuca sativa HOM05D004135 ORTHO05D005558 1.1e-07 60.8 38 78.9
Nn4g26687 Nelumbo nucifera HOM05D004135 ORTHO05D005558 1.1e-07 60.8 32 84.4
Nn7g38349 Nelumbo nucifera HOM05D004135 ORTHO05D005558 1.1e-07 60.8 32 87.5
Zm00001eb430730 Zea mays HOM05D004135 ORTHO05D005558 1.1e-07 60.8 38 73.7
ECA236G2122 Erigeron canadensis HOM05D000091 ORTHO05D001510 1.4e-07 60.5 32 87.5
HanXRQChr04g0119201 Helianthus annuus HOM05D004135 ORTHO05D005558 1.4e-07 60.5 32 87.5
HanXRQChr11g0340901 Helianthus annuus HOM05D004135 ORTHO05D005558 1.4e-07 60.5 38 76.3
Os04g0612600 Oryza sativa ssp. japonica HOM05D004135 ORTHO05D005558 1.4e-07 60.5 38 73.7
THA.LOC104798582 Tarenaya hassleriana HOM05D004135 ORTHO05D005558 1.4e-07 60.5 38 78.9
CiPaw.09G148400 Carya illinoinensis HOM05D004135 ORTHO05D005558 1.8e-07 60.1 38 76.3
ClCG01G025420 Citrullus lanatus HOM05D004135 ORTHO05D005558 1.8e-07 60.1 38 76.3
MELO3C007042.2 Cucumis melo HOM05D004135 ORTHO05D005558 1.8e-07 60.1 38 76.3
CsaV3_6G052670 Cucumis sativus L. HOM05D004135 ORTHO05D005558 1.8e-07 60.1 38 76.3
MBI18_g26296_MAGBIO Magnolia biondii HOM05D004135 ORTHO05D005558 1.8e-07 60.1 31 87.1
Oeu060331.1 Olea europaea HOM05D004135 ORTHO05D005558 1.8e-07 60.1 38 78.9
Sed0006315 Sechium edule HOM05D004135 ORTHO05D005558 1.8e-07 60.1 38 76.3
Sc24g0002580 Simmondsia chinensis HOM05D004135 ORTHO05D005558 1.8e-07 60.1 32 87.5
THA.LOC104814339 Tarenaya hassleriana HOM05D004135 ORTHO05D005558 1.8e-07 60.1 32 87.5
Hma1.2p1_0300F.1_g117980 Hydrangea macrophylla HOM05D004135 ORTHO05D005558 2.4e-07 59.7 32 84.4
Manes.06G053900 Manihot esculenta HOM05D004135 ORTHO05D005558 2.4e-07 59.7 32 87.5
PGR083G2348 Punica granatum HOM05D004135 ORTHO05D005558 2.4e-07 59.7 38 78.9
Lj2A337T32 Lonicera japonica HOM05D004135 ORTHO05D005558 3.1e-07 59.3 38 76.3
Sed0027064 Sechium edule HOM05D004135 ORTHO05D005558 4.1e-07 58.9 38 76.3
vmacro03457 Vaccinium macrocarpon HOM05D004135 ORTHO05D005558 4.1e-07 58.9 32 87.5
CANSAT35G0477 Cannabis sativa HOM05D004135 ORTHO05D005558 5.4e-07 58.5 38 73.7
DCAR_003828 Daucus carota HOM05D004135 ORTHO05D005558 5.4e-07 58.5 38 78.9
Atru.chr6.3256 Acer truncatum HOM05D004135 ORTHO05D005558 7.0e-07 58.2 38 76.3
BcaB07g32703 Brassica carinata HOM05D004135 ORTHO05D005558 7.0e-07 58.2 38 73.7
BcaC02g07752 Brassica carinata HOM05D004135 ORTHO05D005558 7.0e-07 58.2 38 78.9
BcaC05g27087 Brassica carinata HOM05D004135 ORTHO05D005558 7.0e-07 58.2 38 73.7
A04p26610 Brassica napus HOM05D004135 ORTHO05D005558 7.0e-07 58.2 38 78.9
A09p35780 Brassica napus HOM05D004135 ORTHO05D005558 7.0e-07 58.2 38 73.7
C04p64030 Brassica napus HOM05D004135 ORTHO05D005558 7.0e-07 58.2 38 78.9
C05p29690 Brassica napus HOM05D004135 ORTHO05D005558 7.0e-07 58.2 38 73.7
BolC4t27879H Brassica oleracea HOM05D004135 ORTHO05D005558 7.0e-07 58.2 38 78.9
BolC5t31698H Brassica oleracea HOM05D004135 ORTHO05D005558 7.0e-07 58.2 38 73.7
BraA04t18166Z Brassica rapa HOM05D004135 ORTHO05D005558 7.0e-07 58.2 38 78.9
BraA09t39101Z Brassica rapa HOM05D004135 ORTHO05D005558 7.0e-07 58.2 38 73.7
Carub.0004s1652 Capsella rubella HOM05D004135 ORTHO05D005558 7.0e-07 58.2 38 76.3
DCAR_007807 Daucus carota HOM05D004135 ORTHO05D005558 7.0e-07 58.2 32 87.5
RcHm_v2.0_Chr5g0018341 Rosa chinensis HOM05D004135 ORTHO05D005558 7.0e-07 58.2 38 73.7
Solyc02g030243.1 Solanum lycopersicum HOM05D004135 ORTHO05D005558 7.0e-07 58.2 32 84.4
Sopen02g009560 Solanum pennellii HOM05D004135 ORTHO05D005558 7.0e-07 58.2 32 84.4
PGSC0003DMG400031401 Solanum tuberosum HOM05D004135 ORTHO05D005558 7.0e-07 58.2 32 84.4
AT2G34840 Arabidopsis thaliana HOM05D004135 ORTHO05D005558 9.2e-07 57.8 60 55.0
HPP92_013200 Vanilla planifolia HOM05D004135 ORTHO05D005558 9.2e-07 57.8 32 81.2
arahy.Tifrunner.gnm1.ann1.CJHC7K Arachis hypogaea HOM05D004135 ORTHO05D005558 1.2e-06 57.4 33 78.8
arahy.Tifrunner.gnm1.ann1.NB4WMM Arachis hypogaea HOM05D004135 ORTHO05D005558 1.2e-06 57.4 31 80.6
FvH4_3g11400 Fragaria vesca HOM05D004135 ORTHO05D005558 1.2e-06 57.4 38 73.7
Glyma.09G030400 Glycine max HOM05D004135 ORTHO05D005558 1.2e-06 57.4 37 73.0
Glyma.15G136100 Glycine max HOM05D004135 ORTHO05D005558 1.2e-06 57.4 37 73.0
Lj6g0020585 Lotus japonicus HOM05D004135 ORTHO05D005558 1.2e-06 57.4 37 73.0
Lalb_Chr20g0120301 Lupinus albus HOM05D004135 ORTHO05D005558 1.2e-06 57.4 37 73.0
MD05G1263700 Malus domestica HOM05D004135 ORTHO05D005558 1.2e-06 57.4 37 75.7
MD10G1241400 Malus domestica HOM05D004135 ORTHO05D005558 1.2e-06 57.4 38 73.7
Phvul.006G122500 Phaseolus vulgaris HOM05D004135 ORTHO05D005558 1.2e-06 57.4 37 73.0
Prupe.4G101800 Prunus persica HOM05D004135 ORTHO05D005558 1.2e-06 57.4 38 73.7
VMungo0540G1545 Vigna mungo HOM05D004135 ORTHO05D005558 1.2e-06 57.4 37 73.0
BcaB06g28829 Brassica carinata HOM05D004135 ORTHO05D005558 1.6e-06 57.0 38 76.3
FAN16G1287 Fragaria x ananassa HOM05D004135 ORTHO05D005558 1.6e-06 57.0 32 81.2
FAN21G1456 Fragaria x ananassa HOM05D004135 ORTHO05D005558 1.6e-06 57.0 32 81.2
FAN25G0882 Fragaria x ananassa HOM05D004135 ORTHO05D005558 1.6e-06 57.0 32 81.2
MSTRG.16319 Avicennia marina HOM05D004135 ORTHO05D005558 2.0e-06 56.6 38 73.7
MSTRG.7569 Avicennia marina HOM05D004135 ORTHO05D005558 2.0e-06 56.6 60 51.7
SGA_v2.0_scaffold298G47640 Striga asiatica HOM05D004135 ORTHO05D005558 2.0e-06 56.6 38 73.7
Aa31LG10G6460 Aethionema arabicum HOM05D004135 ORTHO05D005558 3.5e-06 55.8 38 73.7
BolC3t14655H Brassica oleracea HOM05D004135 ORTHO05D005558 3.5e-06 55.8 38 76.3
Oeu052702.4 Olea europaea HOM05D004135 ORTHO05D005558 3.5e-06 55.8 38 76.3
ATR0763G246 Amborella trichopoda HOM05D004135 ORTHO05D005558 4.5e-06 55.5 32 78.1
BcaC01g05751 Brassica carinata HOM05D004135 ORTHO05D005558 4.5e-06 55.5 38 73.7
A03p19330 Brassica napus HOM05D004135 ORTHO05D005558 4.5e-06 55.5 38 73.7
C03p22580 Brassica napus HOM05D004135 ORTHO05D005558 4.5e-06 55.5 38 73.7
CDE02G1412 Ceratophyllum demersum HOM05D004135 ORTHO05D005558 4.5e-06 55.5 32 78.1
Cc09_g07090 Coffea canephora HOM05D004135 ORTHO05D005558 4.5e-06 55.5 31 77.4
Migut.M01941 Erythranthe guttata HOM05D004135 ORTHO05D005558 5.9e-06 55.1 38 71.1
SalBow8G1631 Salvia bowleyana HOM05D004135 ORTHO05D005558 5.9e-06 55.1 38 68.4
SalBow8G2729 Salvia bowleyana HOM05D004135 ORTHO05D005558 5.9e-06 55.1 38 68.4


User provided reference genes

Program Settings