Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62014661 Chenopodium quinoa HOM05D004883 ORTHO05D005766 3.4e-65 251.5 126 100.0
AUR62044174 Chenopodium quinoa HOM05D004883 ORTHO05D005766 3.4e-65 251.5 126 100.0
AUR62012534 Chenopodium quinoa HOM05D004883 ORTHO05D005766 1.7e-64 249.2 126 98.4
EL10Ac8g19960 Beta vulgaris HOM05D004883 ORTHO05D005766 1.7e-61 239.2 126 93.7
Ah.09g236860 Amaranthus hybridus HOM05D004883 ORTHO05D005766 1.5e-60 236.1 126 92.9
Hund21302 Selenicereus undatus HOM05D004883 ORTHO05D005766 7.2e-60 233.8 125 89.6
Sc02g0007090 Simmondsia chinensis HOM05D004883 ORTHO05D005766 8.9e-58 226.9 126 89.7
Glyma.17G242300 Glycine max HOM05D004883 ORTHO05D005766 1.4e-55 219.5 126 82.5
Haze_17525 Corylus avellana HOM05D004883 ORTHO05D005766 9.2e-55 216.9 126 84.1
Rhsim07G0228400 Rhododendron simsii HOM05D004883 ORTHO05D005766 9.2e-55 216.9 126 84.9
Cpa.g.sc49.21 Carica papaya HOM05D004883 ORTHO05D005766 1.2e-54 216.5 120 85.8
vmacro04449 Vaccinium macrocarpon HOM05D004883 ORTHO05D005766 1.2e-54 216.5 123 85.4
Dinv35960 Davidia involucrata HOM05D004883 ORTHO05D005766 4.6e-54 214.5 126 83.3
CiPaw.16G043800 Carya illinoinensis HOM05D004883 ORTHO05D005766 7.8e-54 213.8 126 81.0
Glyma.14G082800 Glycine max HOM05D004883 ORTHO05D005766 7.8e-54 213.8 126 80.2
Lsat_1_v5_gn_4_125820 Lactuca sativa HOM05D004883 ORTHO05D005766 7.8e-54 213.8 126 84.1
GSVIVG01009495001 Vitis vinifera HOM05D004883 ORTHO05D005766 7.8e-54 213.8 126 84.1
Atru.chr13.693 Acer truncatum HOM05D004883 ORTHO05D005766 1.0e-53 213.4 126 84.1
arahy.Tifrunner.gnm1.ann1.09A9GY Arachis hypogaea HOM05D004883 ORTHO05D005766 1.0e-53 213.4 126 81.0
arahy.Tifrunner.gnm1.ann1.B0E7W8 Arachis hypogaea HOM05D004883 ORTHO05D005766 1.0e-53 213.4 126 81.0
PGR031G0707 Punica granatum HOM05D004883 ORTHO05D005766 1.3e-53 213.0 120 83.3
VMungo0647G0758 Vigna mungo HOM05D004883 ORTHO05D005766 1.7e-53 212.6 126 82.5
TAR381G1103 Trochodendron aralioides HOM05D004883 ORTHO05D005766 2.9e-53 211.8 123 82.9
FAN20G2534 Fragaria x ananassa HOM05D004883 ORTHO05D005766 3.9e-53 211.5 123 83.7
Ciclev10002854m.g Citrus clementina HOM05D004883 ORTHO05D005766 5.0e-53 211.1 126 80.2
Cc10_g04160 Coffea canephora HOM05D004883 ORTHO05D005766 6.6e-53 210.7 120 86.7
Hma1.2p1_0982F.1_g244010 Hydrangea macrophylla HOM05D004883 ORTHO05D005766 6.6e-53 210.7 123 81.3
MD15G1083000 Malus domestica HOM05D004883 ORTHO05D005766 6.6e-53 210.7 123 82.9
Phvul.001G022000 Phaseolus vulgaris HOM05D004883 ORTHO05D005766 6.6e-53 210.7 126 81.0
Prupe.1G435500 Prunus persica HOM05D004883 ORTHO05D005766 6.6e-53 210.7 123 81.3
Sopen04g032520 Solanum pennellii HOM05D004883 ORTHO05D005766 6.6e-53 210.7 126 80.2
QL02p004805 Quercus lobata HOM05D004883 ORTHO05D005766 8.6e-53 210.3 122 80.3
FvH4_2g34441 Fragaria vesca HOM05D004883 ORTHO05D005766 1.5e-52 209.5 123 82.1
FAN27G2225 Fragaria x ananassa HOM05D004883 ORTHO05D005766 1.5e-52 209.5 122 82.8
Solyc04g078920.3 Solanum lycopersicum HOM05D004883 ORTHO05D005766 1.9e-52 209.1 126 80.2
PGSC0003DMG400007973 Solanum tuberosum HOM05D004883 ORTHO05D005766 1.9e-52 209.1 126 79.4
MD08G1101600 Malus domestica HOM05D004883 ORTHO05D005766 3.3e-52 208.4 123 82.1
Peaxi162Scf00010g00308 Petunia axillaris HOM05D004883 ORTHO05D005766 3.3e-52 208.4 126 79.4
Actinidia38058 Actinidia chinensis HOM05D004883 ORTHO05D005766 4.3e-52 208.0 120 82.5
Medtr1g019430 Medicago truncatula HOM05D004883 ORTHO05D005766 7.3e-52 207.2 126 78.6
ECA232G2590 Erigeron canadensis HOM05D004883 ORTHO05D005766 9.5e-52 206.8 126 82.5
TPR.G3781 Trifolium pratense HOM05D004883 ORTHO05D005766 9.5e-52 206.8 126 79.4
Migut.N02708 Erythranthe guttata HOM05D004883 ORTHO05D005766 1.6e-51 206.1 123 80.5
Lj5g0012185 Lotus japonicus HOM05D004883 ORTHO05D005766 1.6e-51 206.1 125 79.2
COL.COLO4_26509 Corchorus olitorius HOM05D004883 ORTHO05D005766 2.1e-51 205.7 123 80.5
Lsat_1_v5_gn_6_112040 Lactuca sativa HOM05D004883 ORTHO05D005766 2.1e-51 205.7 125 80.8
SalBow7G2082 Salvia bowleyana HOM05D004883 ORTHO05D005766 2.1e-51 205.7 120 81.7
THA.LOC104822849 Tarenaya hassleriana HOM05D004883 ORTHO05D005766 2.8e-51 205.3 120 81.7
CSS0025959 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 4.7e-51 204.5 120 82.5
CSS0031938 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 4.7e-51 204.5 120 82.5
Ca_13291_v3 Cicer arietinum L. HOM05D004883 ORTHO05D005766 4.7e-51 204.5 126 78.6
MSTRG.1348 Avicennia marina HOM05D004883 ORTHO05D005766 6.2e-51 204.1 119 81.5
RcHm_v2.0_Chr6g0307931 Rosa chinensis HOM05D004883 ORTHO05D005766 6.2e-51 204.1 123 80.5
HanXRQChr05g0150871 Helianthus annuus HOM05D004883 ORTHO05D005766 8.0e-51 203.8 126 80.2
Thhalv10003291m.g Eutrema salsugineum HOM05D004883 ORTHO05D005766 1.0e-50 203.4 119 80.7
SalBow3G1199 Salvia bowleyana HOM05D004883 ORTHO05D005766 1.0e-50 203.4 120 81.7
AT5G42890 Arabidopsis thaliana HOM05D004883 ORTHO05D005766 1.4e-50 203.0 123 78.0
HanXRQChr14g0439621 Helianthus annuus HOM05D004883 ORTHO05D005766 1.4e-50 203.0 126 79.4
BcaC04g21964 Brassica carinata HOM05D004883 ORTHO05D005766 1.8e-50 202.6 120 80.0
A09p20040 Brassica napus HOM05D004883 ORTHO05D005766 1.8e-50 202.6 120 80.0
C09p25420 Brassica napus HOM05D004883 ORTHO05D005766 1.8e-50 202.6 120 80.0
BolC9t55441H Brassica oleracea HOM05D004883 ORTHO05D005766 1.8e-50 202.6 120 80.0
BraA09t37617Z Brassica rapa HOM05D004883 ORTHO05D005766 1.8e-50 202.6 120 80.0
Gohir.D01G108200 Gossypium hirsutum HOM05D004883 ORTHO05D005766 1.8e-50 202.6 119 80.7
Lalb_Chr22g0355131 Lupinus albus HOM05D004883 ORTHO05D005766 1.8e-50 202.6 126 78.6
BcaB07g31037 Brassica carinata HOM05D004883 ORTHO05D005766 3.1e-50 201.8 120 79.2
Carub.0008s0602 Capsella rubella HOM05D004883 ORTHO05D005766 3.1e-50 201.8 120 79.2
Gorai.009G211700 Gossypium raimondii HOM05D004883 ORTHO05D005766 3.1e-50 201.8 123 78.0
BcaC06g31741 Brassica carinata HOM05D004883 ORTHO05D005766 4.0e-50 201.4 120 79.2
Migut.C00579 Erythranthe guttata HOM05D004883 ORTHO05D005766 4.0e-50 201.4 120 79.2
Gohir.D05G205400 Gossypium hirsutum HOM05D004883 ORTHO05D005766 4.0e-50 201.4 123 78.0
AL8G18060 Arabidopsis lyrata HOM05D004883 ORTHO05D005766 5.2e-50 201.1 123 77.2
Sp2g07620 Schrenkiella parvula HOM05D004883 ORTHO05D005766 5.2e-50 201.1 119 79.8
Gorai.002G132400 Gossypium raimondii HOM05D004883 ORTHO05D005766 6.8e-50 200.7 120 80.0
Psat1g147680 Pisum sativum HOM05D004883 ORTHO05D005766 8.9e-50 200.3 126 77.0
Thecc.08G007300 Theobroma cacao HOM05D004883 ORTHO05D005766 8.9e-50 200.3 123 77.2
ClCG05G019880 Citrullus lanatus HOM05D004883 ORTHO05D005766 1.2e-49 199.9 127 76.4
Sed0005554 Sechium edule HOM05D004883 ORTHO05D005766 1.2e-49 199.9 123 78.0
DCAR_012777 Daucus carota HOM05D004883 ORTHO05D005766 2.0e-49 199.1 119 81.5
Hund23571 Selenicereus undatus HOM05D004883 ORTHO05D005766 2.0e-49 199.1 126 74.6
Oeu057282.1 Olea europaea HOM05D004883 ORTHO05D005766 2.6e-49 198.7 126 76.2
Eucgr.F02346 Eucalyptus grandis HOM05D004883 ORTHO05D005766 4.4e-49 198.0 154 66.9
FvH4_2g34440 Fragaria vesca HOM05D004883 ORTHO05D005766 4.4e-49 198.0 123 78.0
Gohir.A01G119900 Gossypium hirsutum HOM05D004883 ORTHO05D005766 5.8e-49 197.6 120 78.3
CsaV3_4G034310 Cucumis sativus L. HOM05D004883 ORTHO05D005766 7.5e-49 197.2 123 76.4
Nn1g04858 Nelumbo nucifera HOM05D004883 ORTHO05D005766 9.8e-49 196.8 123 79.7
DCAR_020929 Daucus carota HOM05D004883 ORTHO05D005766 1.3e-48 196.4 119 79.8
Duzib093G0126 Durio zibethinus HOM05D004883 ORTHO05D005766 1.3e-48 196.4 110 84.5
CARHR181250 Cardamine hirsuta HOM05D004883 ORTHO05D005766 1.7e-48 196.1 120 77.5
Gohir.D06G016900 Gossypium hirsutum HOM05D004883 ORTHO05D005766 1.7e-48 196.1 120 79.2
Gorai.010G019800 Gossypium raimondii HOM05D004883 ORTHO05D005766 1.7e-48 196.1 120 79.2
Aa31LG9G12950 Aethionema arabicum HOM05D004883 ORTHO05D005766 2.9e-48 195.3 120 78.3
Oeu044836.1 Olea europaea HOM05D004883 ORTHO05D005766 2.9e-48 195.3 126 75.4
THA.LOC104814168 Tarenaya hassleriana HOM05D004883 ORTHO05D005766 2.9e-48 195.3 120 76.7
ECA246G2602 Erigeron canadensis HOM05D004883 ORTHO05D005766 8.3e-48 193.7 123 76.4
Gohir.A05G202300 Gossypium hirsutum HOM05D004883 ORTHO05D005766 5.4e-47 191.0 109 82.6
CDE08G1634 Ceratophyllum demersum HOM05D004883 ORTHO05D005766 7.0e-47 190.7 120 77.5
Aqoxy5G01236 Aquilegia oxysepala HOM05D004883 ORTHO05D005766 1.2e-46 189.9 123 77.2
MELO3C016751.2 Cucumis melo HOM05D004883 ORTHO05D005766 2.7e-46 188.7 129 71.3
TWI36G0538 Tripterygium wilfordii HOM05D004883 ORTHO05D005766 3.5e-46 188.3 123 76.4
TWI56G0859 Tripterygium wilfordii HOM05D004883 ORTHO05D005766 3.9e-45 184.9 123 74.0
ATR1102G009 Amborella trichopoda HOM05D004883 ORTHO05D005766 6.6e-45 184.1 119 74.8
PSO210G0389 Papaver somniferum HOM05D004883 ORTHO05D005766 6.6e-45 184.1 123 73.2
PSO170G5588 Papaver somniferum HOM05D004883 ORTHO05D005766 8.6e-45 183.7 123 73.2
TWI56G0476 Tripterygium wilfordii HOM05D004883 ORTHO05D005766 8.6e-45 183.7 123 74.0
Nitab4.5_0000287g0320 Nicotiana tabacum HOM05D004883 ORTHO05D005766 1.1e-44 183.3 126 74.6
Nitab4.5_0003118g0020 Nicotiana tabacum HOM05D004883 ORTHO05D005766 1.1e-44 183.3 126 74.6
Sabra02G0098900 Salix brachista HOM05D004883 ORTHO05D005766 1.1e-44 183.3 120 72.5
Os06g0211300 Oryza sativa ssp. japonica HOM05D004883 ORTHO05D005766 1.5e-44 183.0 119 75.6
Potri.002G126200 Populus trichocarpa HOM05D004883 ORTHO05D005766 2.1e-43 179.1 120 70.0
Manes.05G174000 Manihot esculenta HOM05D004883 ORTHO05D005766 4.7e-43 177.9 119 70.6
Duzib041G0234 Durio zibethinus HOM05D004883 ORTHO05D005766 3.1e-42 175.3 123 70.7
SEGI_37934 Sequoiadendron giganteum HOM05D004883 ORTHO05D005766 1.2e-41 173.3 120 70.0
MBI06_g02552_MAGBIO Magnolia biondii HOM05D004883 ORTHO05D005766 1.3e-40 169.9 122 72.1
Pp3c24_4700 Physcomitrium patens HOM05D004883 ORTHO05D005766 1.7e-40 169.5 120 70.0
Os02g0765800 Oryza sativa ssp. japonica HOM05D004883 ORTHO05D005766 2.9e-40 168.7 119 68.1
Potri.014G029300 Populus trichocarpa HOM05D004883 ORTHO05D005766 1.1e-39 166.8 120 65.8
CSS0006435 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 1.9e-39 166.0 119 69.7
MD00G1215600 Malus domestica HOM05D004883 ORTHO05D005766 2.4e-39 165.6 103 76.7
Sabra14G0020100 Salix brachista HOM05D004883 ORTHO05D005766 4.1e-39 164.9 120 65.0
C03p39670 Brassica napus HOM05D004883 ORTHO05D005766 2.1e-38 162.5 107 74.8
Mapoly0033s0053 Marchantia polymorpha HOM05D004883 ORTHO05D005766 1.0e-37 160.2 125 63.2
HPP92_013338 Vanilla planifolia HOM05D004883 ORTHO05D005766 1.1e-36 156.8 126 65.9
EL10Ac4g09184 Beta vulgaris HOM05D004883 ORTHO05D005766 1.5e-36 156.4 121 71.1
SMO169G0122 Selaginella moellendorffii HOM05D004883 ORTHO05D005766 1.9e-36 156.0 127 63.0
Manes.18G037300 Manihot esculenta HOM05D004883 ORTHO05D005766 5.6e-36 154.5 120 62.5
BcaC09g50201 Brassica carinata HOM05D004883 ORTHO05D005766 2.1e-35 152.5 110 66.4
TAR625G0321 Trochodendron aralioides HOM05D004883 ORTHO05D005766 5.2e-34 147.9 95 74.7
FAN15G1199 Fragaria x ananassa HOM05D004883 ORTHO05D005766 6.8e-34 147.5 83 83.1
Peaxi162Scf00252g00711 Petunia axillaris HOM05D004883 ORTHO05D005766 5.8e-33 144.4 126 61.9
CANSAT35G0766 Cannabis sativa HOM05D004883 ORTHO05D005766 7.1e-31 137.5 116 53.4
EL10Ac7g17187 Beta vulgaris HOM05D004883 ORTHO05D005766 2.7e-30 135.6 83 81.9
CAN.G1139.16 Capsicum annuum HOM05D004883 ORTHO05D005766 1.6e-27 126.3 91 64.8
CAN.G371.3 Capsicum annuum HOM05D004883 ORTHO05D005766 1.4e-26 123.2 124 57.3
BcaC01g04518 Brassica carinata HOM05D004883 ORTHO05D005766 1.2e-25 120.2 82 74.4
Nn5g30317 Nelumbo nucifera HOM05D004883 ORTHO05D005766 2.0e-25 119.4 119 57.1
Actinidia29871 Actinidia chinensis HOM05D004883 ORTHO05D005766 4.4e-25 118.2 62 88.7
AagrBONN_evm.TU.Sc2ySwM_344.1976 Anthoceros agrestis HOM05D004883 ORTHO05D005766 9.9e-25 117.1 120 49.2
BolC9t59992H Brassica oleracea HOM05D004883 ORTHO05D005766 1.9e-23 112.8 100 58.0
Gohir.A06G018633 Gossypium hirsutum HOM05D004883 ORTHO05D005766 5.4e-23 111.3 93 61.3
BolC1t02723H Brassica oleracea HOM05D004883 ORTHO05D005766 1.0e-21 107.1 69 72.5
Lj4A58G20 Lonicera japonica HOM05D000983 ORTHO05D005766 1.3e-21 106.7 60 80.0
Os01g0357200 Oryza sativa ssp. japonica HOM05D004883 ORTHO05D005766 5.6e-20 101.3 83 61.4
RcHm_v2.0_Chr5g0032801 Rosa chinensis HOM05D004883 ORTHO05D005766 3.6e-19 98.6 78 66.7
unitig_32.g11126 Utricularia gibba HOM05D004883 ORTHO05D005766 2.4e-15 85.9 61 63.9
C01p27920 Brassica napus HOM05D004883 ORTHO05D005766 3.5e-14 82.0 103 48.5
C09p72490 Brassica napus HOM05D004883 ORTHO05D005766 1.4e-10 70.1 47 70.2
Haze_26844 Corylus avellana HOM05D005792 ORTHO05D007171 1.7e-08 63.2 109 37.6
MELO3C033382.2 Cucumis melo HOM05D004883 ORTHO05D005766 6.4e-08 61.2 39 69.2
PRCOL_00003255 Prasinoderma coloniale HOM05D004883 ORTHO05D005766 1.9e-07 59.7 91 37.4


User provided reference genes

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