Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62043922 Chenopodium quinoa HOM05D005066 ORTHO05D006138 6.4e-191 670.6 345 100.0
AUR62036885 Chenopodium quinoa HOM05D005066 ORTHO05D006138 1.3e-167 593.2 346 90.2
CSS0029951 Camellia sinensis var. sinensis HOM05D005066 ORTHO05D006138 8.1e-162 573.9 352 79.5
Actinidia37971 Actinidia chinensis HOM05D005066 ORTHO05D006138 9.3e-158 560.5 352 78.4
Hma1.2p1_0507F.1_g168410 Hydrangea macrophylla HOM05D005066 ORTHO05D006138 3.5e-157 558.5 350 76.3
GSVIVG01008680001 Vitis vinifera HOM05D005066 ORTHO05D006138 1.3e-156 556.6 352 77.0
Oeu011330.2 Olea europaea HOM05D005066 ORTHO05D006138 1.7e-156 556.2 352 75.9
Dinv31933 Davidia involucrata HOM05D005066 ORTHO05D006138 4.8e-154 548.1 339 78.5
Gohir.A05G254700 Gossypium hirsutum HOM05D005066 ORTHO05D006138 1.1e-153 547.0 352 74.1
Manes.18G005800 Manihot esculenta HOM05D005066 ORTHO05D006138 1.4e-153 546.6 351 74.9
Lsat_1_v5_gn_2_6481 Lactuca sativa HOM05D005066 ORTHO05D006138 1.5e-152 543.1 352 77.0
Duzib093G2109 Durio zibethinus HOM05D005066 ORTHO05D006138 2.0e-152 542.7 352 73.6
Eucgr.F03549 Eucalyptus grandis HOM05D005066 ORTHO05D006138 2.6e-152 542.3 352 72.4
Prupe.1G355000 Prunus persica HOM05D005066 ORTHO05D006138 2.9e-151 538.9 352 73.6
Solyc04g082300.2 Solanum lycopersicum HOM05D005066 ORTHO05D006138 2.9e-151 538.9 352 77.3
Sopen04g035920 Solanum pennellii HOM05D005066 ORTHO05D006138 2.9e-151 538.9 352 77.3
MSTRG.27774 Avicennia marina HOM05D005066 ORTHO05D006138 1.4e-150 536.6 350 72.3
PGSC0003DMG400009976 Solanum tuberosum HOM05D005066 ORTHO05D006138 1.4e-150 536.6 352 77.3
Cc10_g00720 Coffea canephora HOM05D005066 ORTHO05D006138 1.9e-150 536.2 352 73.9
Thecc.08G057800 Theobroma cacao HOM05D005066 ORTHO05D006138 1.9e-150 536.2 352 73.3
TWI36G1160 Tripterygium wilfordii HOM05D005066 ORTHO05D006138 3.2e-150 535.4 353 73.4
CiPaw.07G139500 Carya illinoinensis HOM05D005066 ORTHO05D006138 7.1e-150 534.3 352 73.6
HanXRQChr14g0428271 Helianthus annuus HOM05D005066 ORTHO05D006138 1.2e-149 533.5 350 76.6
ECA238G2025 Erigeron canadensis HOM05D005066 ORTHO05D006138 1.6e-149 533.1 352 75.0
Migut.C00955 Erythranthe guttata HOM05D005066 ORTHO05D006138 2.7e-149 532.3 353 72.5
MD08G1003000 Malus domestica HOM05D005066 ORTHO05D006138 2.7e-149 532.3 352 75.9
Cfa014063 Carpinus fangiana HOM05D005066 ORTHO05D006138 4.6e-149 531.6 352 73.0
MD15G1002700 Malus domestica HOM05D005066 ORTHO05D006138 4.6e-149 531.6 352 73.3
Cpa.g.sc26.207 Carica papaya HOM05D005066 ORTHO05D006138 6.0e-149 531.2 352 73.0
THA.LOC104813757 Tarenaya hassleriana HOM05D005066 ORTHO05D006138 7.9e-149 530.8 352 72.2
Rhsim06G0007900 Rhododendron simsii HOM05D005066 ORTHO05D006138 1.0e-148 530.4 374 71.4
Potri.005G249800 Populus trichocarpa HOM05D005066 ORTHO05D006138 1.3e-148 530.0 352 71.9
Gorai.009G267800 Gossypium raimondii HOM05D005066 ORTHO05D006138 1.8e-148 529.6 339 73.7
Peaxi162Scf00893g00433 Petunia axillaris HOM05D005066 ORTHO05D006138 8.7e-148 527.3 351 72.9
AL1G33470 Arabidopsis lyrata HOM05D005066 ORTHO05D006138 3.3e-147 525.4 350 72.0
Ciclev10001617m.g Citrus clementina HOM05D005066 ORTHO05D006138 3.3e-147 525.4 361 70.6
RcHm_v2.0_Chr6g0304181 Rosa chinensis HOM05D005066 ORTHO05D006138 5.6e-147 524.6 352 72.4
MBI05_g05143_MAGBIO Magnolia biondii HOM05D005066 ORTHO05D006138 7.4e-147 524.2 352 72.7
SGA_v2.0_scaffold108G30855 Striga asiatica HOM05D005066 ORTHO05D006138 9.6e-147 523.9 352 71.9
AT1G20540 Arabidopsis thaliana HOM05D005066 ORTHO05D006138 1.3e-146 523.5 350 71.1
A06p16540 Brassica napus HOM05D005066 ORTHO05D006138 1.6e-146 523.1 350 71.1
BraA06t24760Z Brassica rapa HOM05D005066 ORTHO05D006138 1.6e-146 523.1 350 71.1
Thhalv10008062m.g Eutrema salsugineum HOM05D005066 ORTHO05D006138 8.1e-146 520.8 350 71.1
BcaB07g32052 Brassica carinata HOM05D005066 ORTHO05D006138 1.8e-145 519.6 350 71.4
Hund05118 Selenicereus undatus HOM05D005066 ORTHO05D006138 4.0e-145 518.5 338 76.9
Ca_15439_v3 Cicer arietinum L. HOM05D005066 ORTHO05D006138 6.9e-145 517.7 352 71.9
PSO170G0128 Papaver somniferum HOM05D005066 ORTHO05D006138 9.0e-145 517.3 351 71.2
Sp1g18250 Schrenkiella parvula HOM05D005066 ORTHO05D006138 9.0e-145 517.3 350 70.3
PGR031G0259 Punica granatum HOM05D005066 ORTHO05D006138 1.2e-144 516.9 352 70.7
Aa31LG7G4800 Aethionema arabicum HOM05D005066 ORTHO05D006138 1.5e-144 516.5 352 71.0
CANSAT25G3513 Cannabis sativa HOM05D005066 ORTHO05D006138 1.5e-144 516.5 354 70.6
DCAR_013911 Daucus carota HOM05D005066 ORTHO05D006138 2.0e-144 516.2 338 74.6
Lalb_Chr23g0265821 Lupinus albus HOM05D005066 ORTHO05D006138 2.6e-144 515.8 352 71.6
Carub.0001s2001 Capsella rubella HOM05D005066 ORTHO05D006138 3.4e-144 515.4 350 69.7
Lj1g0027661 Lotus japonicus HOM05D005066 ORTHO05D006138 3.4e-144 515.4 352 71.6
Nitab4.5_0000588g0150 Nicotiana tabacum HOM05D005066 ORTHO05D006138 3.4e-144 515.4 339 73.7
Lj4C805G13 Lonicera japonica HOM05D005066 ORTHO05D006138 7.6e-144 514.2 353 71.1
FvH4_2g37550 Fragaria vesca HOM05D005066 ORTHO05D006138 1.7e-143 513.1 352 71.0
FAN20G0881 Fragaria x ananassa HOM05D005066 ORTHO05D006138 3.8e-143 511.9 352 70.7
Sc15g0004490 Simmondsia chinensis HOM05D005066 ORTHO05D006138 4.9e-143 511.5 319 80.3
VMungo1309G2329 Vigna mungo HOM05D005066 ORTHO05D006138 8.4e-143 510.8 352 70.2
FAN15G0307 Fragaria x ananassa HOM05D005066 ORTHO05D006138 1.1e-142 510.4 352 70.7
vmacro21822 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 1.4e-142 510.0 319 77.1
PSO210G7270 Papaver somniferum HOM05D005066 ORTHO05D006138 1.9e-142 509.6 352 70.7
Potri.002G011200 Populus trichocarpa HOM05D005066 ORTHO05D006138 1.9e-142 509.6 355 68.7
Medtr3g115200 Medicago truncatula HOM05D005066 ORTHO05D006138 2.4e-142 509.2 352 70.2
TPR.G38213 Trifolium pratense HOM05D005066 ORTHO05D006138 4.2e-142 508.4 352 70.5
Aqoxy5G01046 Aquilegia oxysepala HOM05D005066 ORTHO05D006138 2.1e-141 506.1 347 70.3
CsaV3_6G031630 Cucumis sativus L. HOM05D005066 ORTHO05D006138 7.9e-141 504.2 351 69.2
Nn6g31745 Nelumbo nucifera HOM05D005066 ORTHO05D006138 7.9e-141 504.2 339 74.0
unitig_26.g9893 Utricularia gibba HOM05D005066 ORTHO05D006138 7.9e-141 504.2 352 71.0
Phvul.009G010100 Phaseolus vulgaris HOM05D005066 ORTHO05D006138 2.3e-140 502.7 352 69.3
EL10Ac1g01978 Beta vulgaris HOM05D005066 ORTHO05D006138 3.0e-140 502.3 296 86.8
C06p50230 Brassica napus HOM05D005066 ORTHO05D006138 5.1e-140 501.5 352 72.4
BraA07t31713Z Brassica rapa HOM05D005066 ORTHO05D006138 5.1e-140 501.5 352 72.7
BcaC08g47273 Brassica carinata HOM05D005066 ORTHO05D006138 1.9e-139 499.6 352 69.6
BolC6t40062H Brassica oleracea HOM05D005066 ORTHO05D006138 1.9e-139 499.6 352 69.6
A07p41830 Brassica napus HOM05D005066 ORTHO05D006138 7.4e-139 497.7 352 72.4
arahy.Tifrunner.gnm1.ann1.B8YF15 Arachis hypogaea HOM05D005066 ORTHO05D006138 1.6e-138 496.5 339 69.9
Glyma.06G018800 Glycine max HOM05D005066 ORTHO05D006138 1.6e-138 496.5 352 69.0
AT1G76260 Arabidopsis thaliana HOM05D005066 ORTHO05D006138 2.8e-138 495.7 352 71.9
COL.COLO4_03999 Corchorus olitorius HOM05D005066 ORTHO05D006138 3.7e-138 495.4 319 74.3
arahy.Tifrunner.gnm1.ann1.76XKSK Arachis hypogaea HOM05D005066 ORTHO05D006138 4.8e-138 495.0 338 69.8
Sp5g31400 Schrenkiella parvula HOM05D005066 ORTHO05D006138 6.2e-138 494.6 352 67.9
Thhalv10018792m.g Eutrema salsugineum HOM05D005066 ORTHO05D006138 8.1e-138 494.2 352 68.8
AL2G36340 Arabidopsis lyrata HOM05D005066 ORTHO05D006138 1.4e-137 493.4 352 68.8
Carub.0002s2315 Capsella rubella HOM05D005066 ORTHO05D006138 5.3e-137 491.5 352 68.5
CARHR069820 Cardamine hirsuta HOM05D005066 ORTHO05D006138 1.2e-136 490.3 352 71.6
SalBow7G4394 Salvia bowleyana HOM05D005066 ORTHO05D006138 1.2e-136 490.3 408 61.0
CANSAT54G1628 Cannabis sativa HOM05D005066 ORTHO05D006138 5.8e-136 488.0 355 68.2
Aa31LG4G6350 Aethionema arabicum HOM05D005066 ORTHO05D006138 1.3e-135 486.9 352 67.9
Sed0022458 Sechium edule HOM05D005066 ORTHO05D006138 3.2e-134 482.3 351 67.8
FAN27G0843 Fragaria x ananassa HOM05D005066 ORTHO05D006138 4.6e-133 478.4 358 66.5
Sabra05G0193300 Salix brachista HOM05D005066 ORTHO05D006138 7.9e-133 477.6 383 65.3
Ah.13g072510 Amaranthus hybridus HOM05D005066 ORTHO05D006138 3.8e-127 458.8 396 61.4
Glyma.04G018500 Glycine max HOM05D005066 ORTHO05D006138 3.2e-126 455.7 319 69.0
ATR0661G259 Amborella trichopoda HOM05D005066 ORTHO05D006138 7.9e-125 451.1 338 62.4
Gohir.D05G256300 Gossypium hirsutum HOM05D005066 ORTHO05D006138 7.9e-125 451.1 293 72.7
BcaC08g47124 Brassica carinata HOM05D005066 ORTHO05D006138 1.5e-123 446.8 319 71.8
Os08g0554000 Oryza sativa ssp. japonica HOM05D005066 ORTHO05D006138 9.1e-121 437.6 353 59.2
C05p19110 Brassica napus HOM05D005066 ORTHO05D006138 3.4e-120 435.6 297 69.4
BolC5t30611H Brassica oleracea HOM05D005066 ORTHO05D006138 3.4e-120 435.6 297 69.4
BcaC05g25960 Brassica carinata HOM05D005066 ORTHO05D006138 4.5e-120 435.3 295 69.8
Zm00001eb039840 Zea mays HOM05D005066 ORTHO05D006138 5.9e-120 434.9 353 59.8
BNapus_Darmor_BZH_scaffold_170p00070 Brassica napus HOM05D005066 ORTHO05D006138 4.8e-114 415.2 307 64.5
Zm00001eb180420 Zea mays HOM05D005066 ORTHO05D006138 6.9e-113 411.4 353 56.7
TAR381G1664 Trochodendron aralioides HOM05D005066 ORTHO05D006138 4.5e-112 408.7 323 64.1
CSS0013002 Camellia sinensis var. sinensis HOM05D005066 ORTHO05D006138 9.4e-110 401.0 346 60.4
Psat5g011560 Pisum sativum HOM05D005066 ORTHO05D006138 1.6e-109 400.2 269 71.0
AUR62043921 Chenopodium quinoa HOM05D005066 ORTHO05D006138 1.5e-107 393.7 201 96.0
MELO3C026544.2 Cucumis melo HOM05D005066 ORTHO05D006138 7.7e-104 381.3 255 70.6
QL02p013964 Quercus lobata HOM05D005066 ORTHO05D006138 2.7e-101 372.9 263 73.4
Haze_22764 Corylus avellana HOM05D005066 ORTHO05D006138 4.8e-98 362.1 222 77.0
Atru.chr13.151 Acer truncatum HOM05D005066 ORTHO05D006138 8.8e-84 314.7 180 81.7
Mapoly0054s0060 Marchantia polymorpha HOM05D005066 ORTHO05D006138 3.6e-77 292.7 358 45.0
AagrBONN_evm.TU.Sc2ySwM_362.948 Anthoceros agrestis HOM05D005066 ORTHO05D006138 6.4e-74 282.0 358 43.6
CARHR021010 Cardamine hirsuta HOM05D005066 ORTHO05D006138 4.7e-69 265.8 203 62.1
ClCG08G009490 Citrullus lanatus HOM05D005066 ORTHO05D006138 4.4e-67 259.2 158 74.7
HPP92_008373 Vanilla planifolia HOM05D005066 ORTHO05D006138 5.8e-67 258.8 221 57.5
Actinidia29788 Actinidia chinensis HOM05D005066 ORTHO05D006138 1.4e-65 254.2 209 62.2
SMO118G0316 Selaginella moellendorffii HOM05D005066 ORTHO05D006138 7.0e-65 251.9 355 41.7
SHI08001 Sapria himalayana HOM05D005066 ORTHO05D006138 2.7e-64 250.0 199 62.8
AUR62043554 Chenopodium quinoa HOM05D005066 ORTHO05D006138 4.3e-62 242.7 144 84.0
CDE02G3878 Ceratophyllum demersum HOM05D005066 ORTHO05D006138 2.5e-46 190.3 108 80.6
ClCG00G005440 Citrullus lanatus HOM05D005066 ORTHO05D006138 1.1e-41 174.9 118 67.8
QL02p013958 Quercus lobata HOM05D005066 ORTHO05D006138 4.2e-41 172.9 85 91.8
Cre02.g109400 Chlamydomonas reinhardtii HOM05D005066 ORTHO05D006138 1.2e-40 171.4 372 27.4
ClCG08G009550 Citrullus lanatus HOM05D005066 ORTHO05D006138 5.8e-35 152.5 126 61.1
MBI05_g41554_MAGBIO Magnolia biondii HOM05D005066 ORTHO05D006138 6.7e-31 139.0 129 55.8
Duzib116G0540 Durio zibethinus HOM05D005066 ORTHO05D006138 4.0e-28 129.8 237 35.4
SEGI_37952 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 2.2e-26 124.0 82 64.6
CDE04G2988 Ceratophyllum demersum HOM05D005066 ORTHO05D006138 6.4e-26 122.5 70 74.3
PRCOL_00000380 Prasinoderma coloniale HOM05D005066 ORTHO05D006138 1.4e-25 121.3 336 26.5
Haze_22758 Corylus avellana HOM05D005066 ORTHO05D006138 5.6e-22 109.4 76 68.4
vmacro11237 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 6.2e-21 105.9 69 69.6
CBR_g17938 Chara braunii HOM05D005066 ORTHO05D006138 3.1e-20 103.6 209 36.4
vmacro11236 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 3.1e-20 103.6 70 67.1
Actinidia09068 Actinidia chinensis HOM05D005066 ORTHO05D006138 6.7e-15 85.9 54 77.8
Actinidia07458 Actinidia chinensis HOM05D005066 ORTHO05D006138 1.5e-14 84.7 44 84.1
AUR62038170 Chenopodium quinoa HOM05D000030 ORTHO05D000031 1.9e-14 84.3 45 84.4
SEGI_07968 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 1.9e-14 84.3 58 69.0
AUR62018933 Chenopodium quinoa HOM05D000030 ORTHO05D000031 1.6e-13 81.3 45 82.2
arahy.Tifrunner.gnm1.ann1.FBZU85 Arachis hypogaea HOM05D005066 ORTHO05D006138 1.2e-08 65.1 139 30.9
MCO04G183 Micromonas commoda HOM05D005066 ORTHO05D006138 1.6e-08 64.7 359 23.4
vmacro21824 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 2.1e-08 64.3 48 60.4
arahy.Tifrunner.gnm1.ann1.7RQ6TB Arachis hypogaea HOM05D005066 ORTHO05D006138 1.8e-07 61.2 58 43.1
SEGI_12583 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 1.1e-06 58.5 46 56.5


User provided reference genes

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