Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62043756 Chenopodium quinoa HOM05D001533 ORTHO05D005122 8.6e-164 580.5 345 100.0
AUR62044201 Chenopodium quinoa HOM05D001533 ORTHO05D005122 8.6e-164 580.5 345 100.0
AUR62007522 Chenopodium quinoa HOM05D001533 ORTHO05D005122 8.7e-156 553.9 338 97.0
EL10As8g23833 Beta vulgaris HOM05D001533 ORTHO05D005122 1.6e-130 469.9 371 80.9
Hund16484 Selenicereus undatus HOM05D001533 ORTHO05D005122 5.9e-120 434.9 345 78.8
Gorai.003G010300 Gossypium raimondii HOM05D001533 ORTHO05D005122 2.0e-112 409.8 345 73.6
Ciclev10025997m.g Citrus clementina HOM05D001533 ORTHO05D005122 7.7e-112 407.9 345 67.2
Gohir.A02G170000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 1.0e-111 407.5 345 73.3
Dinv33621 Davidia involucrata HOM05D001533 ORTHO05D005122 1.7e-111 406.8 345 71.6
MD02G1133400 Malus domestica HOM05D001533 ORTHO05D005122 3.8e-111 405.6 345 66.1
Thecc.01G020200 Theobroma cacao HOM05D001533 ORTHO05D005122 3.8e-111 405.6 345 67.0
QL06p033501 Quercus lobata HOM05D001533 ORTHO05D005122 1.9e-110 403.3 344 66.3
TWI53G2031 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 2.5e-110 402.9 345 66.4
COL.COLO4_21923 Corchorus olitorius HOM05D001533 ORTHO05D005122 5.5e-110 401.7 346 67.1
Cfa006964 Carpinus fangiana HOM05D001533 ORTHO05D005122 2.1e-109 399.8 335 66.9
Cpa.g.sc6.238 Carica papaya HOM05D001533 ORTHO05D005122 2.7e-109 399.4 345 65.2
TWI09G0584 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 4.7e-109 398.7 345 65.2
TAR381G0830 Trochodendron aralioides HOM05D001533 ORTHO05D005122 1.0e-108 397.5 345 64.6
Prupe.7G167200 Prunus persica HOM05D001533 ORTHO05D005122 1.4e-108 397.1 345 65.2
MELO3C016393.2 Cucumis melo HOM05D001533 ORTHO05D005122 3.9e-108 395.6 345 64.9
vmacro18418 Vaccinium macrocarpon HOM05D001533 ORTHO05D005122 6.7e-108 394.8 345 64.9
Peaxi162Scf00034g00264 Petunia axillaris HOM05D001533 ORTHO05D005122 8.8e-108 394.4 345 69.0
Actinidia31002 Actinidia chinensis HOM05D001533 ORTHO05D005122 2.0e-107 393.3 345 63.5
Duzib187G1725 Durio zibethinus HOM05D001533 ORTHO05D005122 2.6e-107 392.9 347 64.0
Rhsim08G0034200 Rhododendron simsii HOM05D001533 ORTHO05D005122 2.6e-107 392.9 345 64.6
CAN.G1671.6 Capsicum annuum HOM05D001533 ORTHO05D005122 7.4e-107 391.3 345 63.5
Lj4g0002557 Lotus japonicus HOM05D001533 ORTHO05D005122 1.3e-106 390.6 345 62.9
Glyma.16G129200 Glycine max HOM05D001533 ORTHO05D005122 1.7e-106 390.2 345 68.4
Cc00_g26600 Coffea canephora HOM05D001533 ORTHO05D005122 2.2e-106 389.8 345 62.6
Nitab4.5_0006286g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 2.2e-106 389.8 345 63.8
CsaV3_4G005560 Cucumis sativus L. HOM05D001533 ORTHO05D005122 2.8e-106 389.4 345 64.1
Haze_03774 Corylus avellana HOM05D001533 ORTHO05D005122 4.8e-106 388.7 341 64.2
Glyma.02G049100 Glycine max HOM05D001533 ORTHO05D005122 6.3e-106 388.3 345 65.5
CiPaw.08G132200 Carya illinoinensis HOM05D001533 ORTHO05D005122 1.4e-105 387.1 345 63.5
ClCG07G008590 Citrullus lanatus HOM05D001533 ORTHO05D005122 1.8e-105 386.7 335 65.1
Manes.01G145100 Manihot esculenta HOM05D001533 ORTHO05D005122 3.1e-105 386.0 345 64.1
Duzib264G0112 Durio zibethinus HOM05D001533 ORTHO05D005122 9.1e-105 384.4 345 71.3
Peaxi162Scf00083g00714 Petunia axillaris HOM05D001533 ORTHO05D005122 1.6e-104 383.6 345 62.3
RcHm_v2.0_Chr2g0099581 Rosa chinensis HOM05D001533 ORTHO05D005122 1.6e-104 383.6 345 62.9
Gohir.D03G010000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 3.5e-104 382.5 345 70.1
CiPaw.07G057700 Carya illinoinensis HOM05D001533 ORTHO05D005122 4.5e-104 382.1 337 63.8
Potri.005G115500 Populus trichocarpa HOM05D001533 ORTHO05D005122 4.5e-104 382.1 343 64.7
CAN.G893.6 Capsicum annuum HOM05D001533 ORTHO05D005122 5.9e-104 381.7 345 62.0
FvH4_1g11960 Fragaria vesca HOM05D001533 ORTHO05D005122 7.7e-104 381.3 345 62.9
FAN28G1062 Fragaria x ananassa HOM05D001533 ORTHO05D005122 1.3e-103 380.6 345 62.9
Sed0027203 Sechium edule HOM05D001533 ORTHO05D005122 2.9e-103 379.4 337 63.8
FAN19G0503 Fragaria x ananassa HOM05D001533 ORTHO05D005122 6.5e-103 378.3 345 62.3
FAN26G0519 Fragaria x ananassa HOM05D001533 ORTHO05D005122 6.5e-103 378.3 345 62.3
Glyma.01G166700 Glycine max HOM05D001533 ORTHO05D005122 6.5e-103 378.3 345 61.2
Solyc02g083990.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 6.5e-103 378.3 345 61.4
Gohir.A11G176200 Gossypium hirsutum HOM05D001533 ORTHO05D005122 8.5e-103 377.9 345 70.4
Nn6g32353 Nelumbo nucifera HOM05D001533 ORTHO05D005122 8.5e-103 377.9 341 63.0
VMungo0251G1454 Vigna mungo HOM05D001533 ORTHO05D005122 1.1e-102 377.5 345 62.3
Phvul.002G109200 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 4.2e-102 375.6 345 61.4
Sabra05G0094600 Salix brachista HOM05D001533 ORTHO05D005122 7.2e-102 374.8 372 60.5
FAN23G2041 Fragaria x ananassa HOM05D001533 ORTHO05D005122 9.4e-102 374.4 345 61.7
Solyc03g033580.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 1.2e-101 374.0 345 60.9
Sopen03g006360 Solanum pennellii HOM05D001533 ORTHO05D005122 1.2e-101 374.0 345 61.2
Potri.007G012600 Populus trichocarpa HOM05D001533 ORTHO05D005122 1.6e-101 373.6 343 63.3
Phvul.003G262700 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 2.1e-101 373.2 345 62.0
SGA_v2.0_scaffold137G35090 Striga asiatica HOM05D001533 ORTHO05D005122 2.1e-101 373.2 345 65.8
Lj2g0008453 Lotus japonicus HOM05D001533 ORTHO05D005122 3.6e-101 372.5 345 60.3
VMungo1215G1138 Vigna mungo HOM05D001533 ORTHO05D005122 3.6e-101 372.5 345 61.4
Sopen02g028790 Solanum pennellii HOM05D001533 ORTHO05D005122 6.1e-101 371.7 345 60.9
Duzib147G0876 Durio zibethinus HOM05D001533 ORTHO05D005122 4.0e-100 369.0 345 69.6
MSTRG.2705 Avicennia marina HOM05D001533 ORTHO05D005122 5.2e-100 368.6 319 70.8
Nitab4.5_0006119g0010 Nicotiana tabacum HOM05D001533 ORTHO05D005122 5.2e-100 368.6 341 68.9
Gorai.007G195800 Gossypium raimondii HOM05D001533 ORTHO05D005122 2.6e-99 366.3 345 69.9
Hma1.2p1_0743F.1_g211570 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 3.3e-99 365.9 345 68.1
CSS0030027 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 5.7e-99 365.2 345 61.2
Ca_22369_v3 Cicer arietinum L. HOM05D001533 ORTHO05D005122 2.8e-98 362.8 345 62.0
Gohir.D11G183900 Gossypium hirsutum HOM05D001533 ORTHO05D005122 3.7e-98 362.5 345 69.6
SalBow3G3323 Salvia bowleyana HOM05D001533 ORTHO05D005122 3.7e-98 362.5 394 55.3
TPR.G30063 Trifolium pratense HOM05D001533 ORTHO05D005122 1.1e-97 360.9 345 58.8
Atru.chr3.790 Acer truncatum HOM05D001533 ORTHO05D005122 1.8e-97 360.1 345 68.7
Nitab4.5_0000438g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 4.1e-97 359.0 315 64.1
DCAR_016613 Daucus carota HOM05D001533 ORTHO05D005122 1.6e-96 357.1 337 67.1
arahy.Tifrunner.gnm1.ann1.H1V2NS Arachis hypogaea HOM05D001533 ORTHO05D005122 4.5e-96 355.5 328 61.3
CSS0008566 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 5.9e-96 355.1 319 65.2
Manes.02G103600 Manihot esculenta HOM05D001533 ORTHO05D005122 1.3e-95 354.0 345 66.4
TAR628G0959 Trochodendron aralioides HOM05D001533 ORTHO05D005122 2.2e-95 353.2 345 66.7
CANSAT01G1879 Cannabis sativa HOM05D001533 ORTHO05D005122 1.1e-94 350.9 345 67.8
PSO170G0469 Papaver somniferum HOM05D001533 ORTHO05D005122 2.5e-94 349.7 343 58.3
Oeu035307.1 Olea europaea HOM05D001533 ORTHO05D005122 2.7e-93 346.3 345 66.4
Nn5g29330 Nelumbo nucifera HOM05D001533 ORTHO05D005122 1.4e-92 344.0 340 64.1
PSO700G0386 Papaver somniferum HOM05D001533 ORTHO05D005122 8.8e-92 341.3 343 57.4
Glyma.11G076600 Glycine max HOM05D001533 ORTHO05D005122 1.2e-91 340.9 331 59.5
GSVIVG01018794001 Vitis vinifera HOM05D001533 ORTHO05D005122 7.5e-91 338.2 345 66.4
Ah.02g124450 Amaranthus hybridus HOM05D001533 ORTHO05D005122 1.3e-90 337.4 261 73.2
CANSAT80G2154 Cannabis sativa HOM05D001533 ORTHO05D005122 2.2e-90 336.7 345 58.8
Sc16g0002080 Simmondsia chinensis HOM05D001533 ORTHO05D005122 8.5e-87 324.7 345 64.6
Lalb_Chr16g0377521 Lupinus albus HOM05D001533 ORTHO05D005122 1.1e-86 324.3 345 62.3
ECA246G3074 Erigeron canadensis HOM05D001533 ORTHO05D005122 3.2e-86 322.8 345 61.4
Lalb_Chr09g0321781 Lupinus albus HOM05D001533 ORTHO05D005122 4.2e-86 322.4 345 56.8
Eucgr.J02426 Eucalyptus grandis HOM05D001533 ORTHO05D005122 1.6e-85 320.5 346 56.4
THA.LOC104804260 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 1.6e-85 320.5 330 55.8
Hma1.2p1_2281F.1_g318810 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 4.7e-85 318.9 261 65.5
Lalb_Chr05g0229891 Lupinus albus HOM05D001533 ORTHO05D005122 1.2e-83 314.3 345 62.3
Os06g0715400 Oryza sativa ssp. japonica HOM05D001533 ORTHO05D005122 1.2e-83 314.3 327 55.7
THA.LOC104807492 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 1.2e-83 314.3 345 53.3
PGR119G1411 Punica granatum HOM05D001533 ORTHO05D005122 4.4e-83 312.4 347 62.0
Lj2C466T13 Lonicera japonica HOM05D001533 ORTHO05D005122 7.5e-83 311.6 346 55.2
MBI05_g43883_MAGBIO Magnolia biondii HOM05D001533 ORTHO05D005122 4.9e-82 308.9 338 62.7
Aa31LG1G14750 Aethionema arabicum HOM05D001533 ORTHO05D005122 1.4e-81 307.4 343 54.5
arahy.Tifrunner.gnm1.ann1.JA3WP2 Arachis hypogaea HOM05D001533 ORTHO05D005122 2.0e-80 303.5 261 62.8
Zm00001eb228040 Zea mays HOM05D001533 ORTHO05D005122 2.3e-79 300.1 324 54.6
Sp3g31420 Schrenkiella parvula HOM05D001533 ORTHO05D005122 2.9e-79 299.7 348 51.1
AT2G17990 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 2.8e-77 293.1 350 50.6
Nitab4.5_0001959g0020 Nicotiana tabacum HOM05D001533 ORTHO05D005122 1.0e-76 291.2 261 61.7
AL3G51060 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 6.8e-76 288.5 349 50.1
Oeu005320.1 Olea europaea HOM05D001533 ORTHO05D005122 1.5e-75 287.3 319 54.9
Lj4C217T16 Lonicera japonica HOM05D001533 ORTHO05D005122 1.7e-74 283.9 336 53.0
PGSC0003DMG400003635 Solanum tuberosum HOM05D001533 ORTHO05D005122 1.4e-73 280.8 235 64.3
CDE04G1263 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 2.7e-72 276.6 334 54.8
Carub.0003s3213 Capsella rubella HOM05D001533 ORTHO05D005122 1.0e-71 274.6 348 47.7
CARHR108480 Cardamine hirsuta HOM05D001533 ORTHO05D005122 5.0e-71 272.3 346 49.1
CDE02G4489 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 6.6e-71 271.9 321 57.3
A07p02680 Brassica napus HOM05D001533 ORTHO05D005122 4.3e-70 269.2 346 49.1
BraA07t28064Z Brassica rapa HOM05D001533 ORTHO05D005122 4.3e-70 269.2 346 49.1
Thhalv10004494m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 3.6e-69 266.2 342 50.0
C07p04980 Brassica napus HOM05D001533 ORTHO05D005122 1.8e-68 263.8 346 48.3
Aa31LG8G15170 Aethionema arabicum HOM05D001533 ORTHO05D005122 4.0e-68 262.7 348 48.3
Psat4g098560 Pisum sativum HOM05D001533 ORTHO05D005122 4.0e-68 262.7 346 55.5
BcaC06g36351 Brassica carinata HOM05D001533 ORTHO05D005122 1.5e-67 260.8 346 47.7
Thhalv10022777m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 4.4e-67 259.2 346 48.6
BcaB08g34783 Brassica carinata HOM05D001533 ORTHO05D005122 9.2e-65 251.5 346 46.2
Aqoxy6G02302 Aquilegia oxysepala HOM05D001533 ORTHO05D005122 1.2e-64 251.1 345 47.8
Oeu048459.1 Olea europaea HOM05D001533 ORTHO05D005122 2.7e-64 250.0 261 56.3
Aa31LG6G13050 Aethionema arabicum HOM05D001533 ORTHO05D005122 1.3e-63 247.7 346 46.2
AL8G45270 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 6.6e-63 245.4 343 48.7
AT5G66250 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 5.6e-62 242.3 344 48.0
Sp2g30440 Schrenkiella parvula HOM05D001533 ORTHO05D005122 1.2e-61 241.1 303 52.1
AL6G43540 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 2.8e-61 240.0 346 45.4
A06p33470 Brassica napus HOM05D001533 ORTHO05D005122 1.2e-59 234.6 346 45.1
Thhalv10025665m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 4.4e-59 232.6 325 45.2
Medtr8g076020 Medicago truncatula HOM05D001533 ORTHO05D005122 5.8e-59 232.3 345 52.5
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 1.1e-57 228.0 262 51.5
Carub.0008s2824 Capsella rubella HOM05D001533 ORTHO05D005122 1.9e-57 227.3 343 46.6
BraA06t26280Z Brassica rapa HOM05D001533 ORTHO05D005122 3.2e-57 226.5 341 44.6
BolC3t18147H Brassica oleracea HOM05D001533 ORTHO05D005122 4.1e-57 226.1 341 44.9
Sp7g33880 Schrenkiella parvula HOM05D001533 ORTHO05D005122 1.6e-56 224.2 288 47.9
AUR62043805 Chenopodium quinoa HOM05D001533 ORTHO05D005122 2.1e-56 223.8 345 53.9
Lsat_1_v5_gn_4_146800 Lactuca sativa HOM05D001533 ORTHO05D005122 8.6e-55 218.4 358 50.8
A09p10100 Brassica napus HOM05D001533 ORTHO05D005122 2.5e-54 216.9 301 47.8
C03p58890 Brassica napus HOM05D001533 ORTHO05D005122 3.3e-54 216.5 341 43.4
C09p11970 Brassica napus HOM05D001533 ORTHO05D005122 4.3e-54 216.1 302 48.0
Lsat_1_v5_gn_4_146821 Lactuca sativa HOM05D001533 ORTHO05D005122 5.6e-54 215.7 354 50.0
BraA09t36653Z Brassica rapa HOM05D001533 ORTHO05D005122 9.5e-54 214.9 313 45.0
BcaNung04495 Brassica carinata HOM05D001533 ORTHO05D005122 2.4e-52 210.3 228 54.4
BolC9t54085H Brassica oleracea HOM05D001533 ORTHO05D005122 8.9e-52 208.4 320 45.3
Carub.0007s0413 Capsella rubella HOM05D001533 ORTHO05D005122 2.2e-50 203.8 343 41.1
AagrBONN_evm.TU.Sc2ySwM_228.4945 Anthoceros agrestis HOM05D001533 ORTHO05D005122 1.1e-49 201.4 350 38.3
BolC7t40899H Brassica oleracea HOM05D001533 ORTHO05D005122 2.3e-47 193.7 262 46.2
ATR0680G362 Amborella trichopoda HOM05D001533 ORTHO05D005122 4.3e-46 189.5 339 42.2
SMO358G0186 Selaginella moellendorffii HOM05D001533 ORTHO05D005122 3.4e-43 179.9 290 41.4
MD15G1246600 Malus domestica HOM05D001533 ORTHO05D005122 6.6e-39 165.6 138 70.3
SEGI_32707 Sequoiadendron giganteum HOM05D001533 ORTHO05D005122 1.1e-38 164.9 343 33.8
HanXRQChr16g0531321 Helianthus annuus HOM05D001533 ORTHO05D005122 1.2e-35 154.8 174 50.6
BcaNung04499 Brassica carinata HOM05D001533 ORTHO05D005122 2.0e-35 154.1 213 46.9
CARHR281470 Cardamine hirsuta HOM05D001533 ORTHO05D005122 9.9e-35 151.8 228 44.3
AT4G36105 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 3.8e-34 149.8 305 39.7
unitig_899.g14709 Utricularia gibba HOM05D001533 ORTHO05D000063 3.9e-31 139.8 142 58.5
HPP92_007128 Vanilla planifolia HOM05D001533 ORTHO05D005122 3.9e-31 139.8 176 49.4
CARHR244500 Cardamine hirsuta HOM05D001533 ORTHO05D005122 1.1e-25 121.7 321 34.0
C01p02930 Brassica napus HOM05D001533 ORTHO05D024397 9.3e-25 118.6 294 33.7
BolC1t00279H Brassica oleracea HOM05D001533 ORTHO05D024397 3.1e-20 103.6 289 34.9
BcaNung00764 Brassica carinata HOM05D001533 ORTHO05D024397 9.3e-17 92.0 289 43.3
unitig_699.g19710 Utricularia gibba HOM05D001533 ORTHO05D005122 4.6e-16 89.7 172 45.3
A01p02640 Brassica napus HOM05D001533 ORTHO05D024397 1.9e-14 84.3 312 29.2
BraA01t00250Z Brassica rapa HOM05D001533 ORTHO05D024397 1.9e-14 84.3 312 29.2
CARHR281460 Cardamine hirsuta HOM05D001533 ORTHO05D019802 1.9e-14 84.3 52 84.6
arahy.Tifrunner.gnm1.ann1.2HD0B7 Arachis hypogaea HOM05D001533 ORTHO05D019802 1.6e-13 81.3 47 89.4
A09p11640 Brassica napus HOM05D001533 ORTHO05D019802 6.5e-10 69.3 91 48.4
BraA09t36810Z Brassica rapa HOM05D001533 ORTHO05D019802 1.2e-08 65.1 111 42.3
BolC9t54258H Brassica oleracea HOM05D001533 ORTHO05D019802 1.1e-06 58.5 42 71.4


User provided reference genes

Program Settings