Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62043218 Chenopodium quinoa HOM05D001104 ORTHO05D006624 3.7e-182 641.3 308 100.0
Ciclev10015353m.g Citrus clementina HOM05D001104 ORTHO05D006624 3.1e-120 435.6 424 54.7
Dinv35069 Davidia involucrata HOM05D001104 ORTHO05D006624 9.9e-119 430.6 426 54.7
CSS0039746 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 1.1e-117 427.2 426 54.0
TWI12G0063 Tripterygium wilfordii HOM05D001104 ORTHO05D006624 1.9e-117 426.4 424 53.8
Cpa.g.sc215.8 Carica papaya HOM05D001104 ORTHO05D006624 2.1e-116 422.9 424 53.3
Lj7C592G4 Lonicera japonica HOM05D001104 ORTHO05D006624 2.1e-116 422.9 405 54.8
AUR62029365 Chenopodium quinoa HOM05D001104 ORTHO05D006624 6.0e-116 421.4 380 61.1
MELO3C021546.2 Cucumis melo HOM05D001104 ORTHO05D006624 6.0e-116 421.4 426 52.6
CSS0024274 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 1.0e-115 420.6 430 53.0
CsaV3_5G027380 Cucumis sativus L. HOM05D001104 ORTHO05D006624 1.7e-115 419.9 426 52.6
Hma1.2p1_0993F.1_g245480 Hydrangea macrophylla HOM05D001104 ORTHO05D006624 3.9e-115 418.7 426 53.3
Actinidia35743 Actinidia chinensis HOM05D001104 ORTHO05D006624 8.7e-115 417.5 425 52.9
Rhsim10G0021500 Rhododendron simsii HOM05D001104 ORTHO05D006624 8.7e-115 417.5 419 52.7
Sed0005946 Sechium edule HOM05D001104 ORTHO05D006624 1.5e-114 416.8 424 51.9
CiPaw.03G038600 Carya illinoinensis HOM05D001104 ORTHO05D006624 1.9e-114 416.4 424 52.8
Oeu062922.1 Olea europaea HOM05D001104 ORTHO05D006624 1.9e-114 416.4 419 53.0
PGSC0003DMG400006955 Solanum tuberosum HOM05D001104 ORTHO05D006624 7.3e-114 414.5 418 52.9
Atru.chr6.2305 Acer truncatum HOM05D001104 ORTHO05D006624 9.6e-114 414.1 424 52.1
Prupe.3G285400 Prunus persica HOM05D001104 ORTHO05D006624 9.6e-114 414.1 433 51.0
Dinv33487 Davidia involucrata HOM05D001104 ORTHO05D006624 1.2e-113 413.7 423 53.0
MD09G1032600 Malus domestica HOM05D001104 ORTHO05D006624 2.1e-113 412.9 438 50.5
Potri.001G348700 Populus trichocarpa HOM05D001104 ORTHO05D006624 2.8e-113 412.5 424 52.6
CANSAT64G0855 Cannabis sativa HOM05D001104 ORTHO05D006624 3.6e-113 412.1 423 51.3
Solyc02g067740.4 Solanum lycopersicum HOM05D001104 ORTHO05D006624 3.6e-113 412.1 418 52.4
Sopen02g016860 Solanum pennellii HOM05D001104 ORTHO05D006624 4.7e-113 411.8 418 52.4
vmacro05831 Vaccinium macrocarpon HOM05D001104 ORTHO05D006624 4.7e-113 411.8 413 53.0
TAR374G1405 Trochodendron aralioides HOM05D001104 ORTHO05D006624 8.1e-113 411.0 424 51.9
Nitab4.5_0001709g0040 Nicotiana tabacum HOM05D001104 ORTHO05D006624 1.1e-112 410.6 417 52.5
MD17G1034200 Malus domestica HOM05D001104 ORTHO05D006624 3.1e-112 409.1 445 49.2
Thecc.04G010000 Theobroma cacao HOM05D001104 ORTHO05D006624 3.1e-112 409.1 424 51.4
Actinidia06020 Actinidia chinensis HOM05D001104 ORTHO05D006624 6.9e-112 407.9 419 52.3
Migut.H00115 Erythranthe guttata HOM05D001104 ORTHO05D006624 6.9e-112 407.9 411 53.3
Cc07_g02180 Coffea canephora HOM05D001104 ORTHO05D006624 1.5e-111 406.8 426 51.6
Haze_14675 Corylus avellana HOM05D001104 ORTHO05D006624 3.4e-111 405.6 420 51.9
EL10Ac4g08579 Beta vulgaris HOM05D001104 ORTHO05D006624 9.9e-111 404.1 424 54.2
MSTRG.15512 Avicennia marina HOM05D001104 ORTHO05D006624 1.7e-110 403.3 426 50.9
CAN.G973.9 Capsicum annuum HOM05D001104 ORTHO05D006624 2.9e-110 402.5 417 51.8
Duzib147G0036 Durio zibethinus HOM05D001104 ORTHO05D006624 4.9e-110 401.7 423 49.9
ClCG09G018970 Citrullus lanatus HOM05D001104 ORTHO05D006624 1.1e-109 400.6 476 47.7
COL.COLO4_28978 Corchorus olitorius HOM05D001104 ORTHO05D006624 6.0e-108 394.8 446 49.6
GSVIVG01032469001 Vitis vinifera HOM05D001104 ORTHO05D006624 1.3e-107 393.7 424 50.7
Eucgr.I01793 Eucalyptus grandis HOM05D001104 ORTHO05D006624 8.7e-107 391.0 427 50.8
PSO478G3469 Papaver somniferum HOM05D001104 ORTHO05D006624 1.1e-106 390.6 419 51.1
RcHm_v2.0_Chr2g0171701 Rosa chinensis HOM05D001104 ORTHO05D006624 2.5e-106 389.4 439 47.8
Nn4g22776 Nelumbo nucifera HOM05D001104 ORTHO05D006624 4.3e-106 388.7 425 49.2
Rhsim08G0054100 Rhododendron simsii HOM05D001104 ORTHO05D006285 1.6e-105 386.7 314 63.1
SalBow1G5303 Salvia bowleyana HOM05D001104 ORTHO05D006624 2.8e-105 386.0 413 51.1
Gorai.001G262300 Gossypium raimondii HOM05D001104 ORTHO05D006624 6.2e-105 384.8 424 47.9
FAN14G0697 Fragaria x ananassa HOM05D001104 ORTHO05D006624 8.1e-105 384.4 440 46.8
Gohir.A07G220700 Gossypium hirsutum HOM05D001104 ORTHO05D006624 1.8e-104 383.3 424 47.9
FAN05G2035 Fragaria x ananassa HOM05D001104 ORTHO05D006624 3.1e-104 382.5 440 46.8
HanXRQChr14g0450311 Helianthus annuus HOM05D001104 ORTHO05D006624 3.1e-104 382.5 419 48.9
QL02p076349 Quercus lobata HOM05D001104 ORTHO05D006624 4.0e-104 382.1 418 49.3
FvH4_6g50760 Fragaria vesca HOM05D001104 ORTHO05D006624 5.3e-104 381.7 440 46.6
vmacro18250 Vaccinium macrocarpon HOM05D001104 ORTHO05D006624 2.6e-103 379.4 359 56.8
ECA238G2799 Erigeron canadensis HOM05D001104 ORTHO05D006624 2.9e-102 375.9 417 47.2
ECA232G2826 Erigeron canadensis HOM05D001104 ORTHO05D006624 6.4e-102 374.8 416 48.6
THA.LOC104825337 Tarenaya hassleriana HOM05D001104 ORTHO05D006624 6.4e-102 374.8 427 49.2
Ca_04192_v3 Cicer arietinum L. HOM05D001104 ORTHO05D006624 2.4e-101 372.9 398 50.0
Nitab4.5_0001125g0070 Nicotiana tabacum HOM05D001104 ORTHO05D006624 2.4e-101 372.9 341 57.8
Hma1.2p1_3249F.1_g334430 Hydrangea macrophylla HOM05D001104 ORTHO05D006624 7.1e-101 371.3 394 50.5
Sp2g16980 Schrenkiella parvula HOM05D001104 ORTHO05D006624 2.7e-100 369.4 426 47.9
Cfa007422 Carpinus fangiana HOM05D001104 ORTHO05D006624 3.9e-99 365.5 388 51.3
Aqoxy3G01030 Aquilegia oxysepala HOM05D001104 ORTHO05D006624 5.1e-99 365.2 419 48.7
HanXRQChr09g0266171 Helianthus annuus HOM05D001104 ORTHO05D006624 1.1e-98 364.0 412 48.3
Peaxi162Scf00933g00005 Petunia axillaris HOM05D001104 ORTHO05D006624 1.9e-98 363.2 392 50.0
Thhalv10004293m.g Eutrema salsugineum HOM05D001104 ORTHO05D006624 3.3e-98 362.5 421 48.7
BcaC06g30950 Brassica carinata HOM05D001104 ORTHO05D006624 4.3e-98 362.1 427 46.8
PGR142G0881 Punica granatum HOM05D001104 ORTHO05D006624 5.6e-98 361.7 421 47.3
Lsat_1_v5_gn_4_182480 Lactuca sativa HOM05D001104 ORTHO05D006624 1.3e-97 360.5 385 50.1
arahy.Tifrunner.gnm1.ann1.PA6DSG Arachis hypogaea HOM05D001104 ORTHO05D006624 3.7e-97 359.0 421 46.8
BcaC06g33770 Brassica carinata HOM05D001104 ORTHO05D006624 8.1e-97 357.8 426 46.7
C07p37130 Brassica napus HOM05D001104 ORTHO05D006624 8.1e-97 357.8 426 46.7
PSO017G6424 Papaver somniferum HOM05D001104 ORTHO05D006624 1.4e-96 357.1 419 47.5
CSS0012459 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 1.8e-96 356.7 374 52.7
Carub.0005s0650 Capsella rubella HOM05D001104 ORTHO05D006624 2.4e-96 356.3 419 47.5
CSS0016338 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 5.3e-96 355.1 431 47.6
AT3G27930 Arabidopsis thaliana HOM05D001104 ORTHO05D006624 2.6e-95 352.8 419 47.0
Medtr6g007040 Medicago truncatula HOM05D001104 ORTHO05D006624 7.6e-95 351.3 417 46.3
ATR0730G148 Amborella trichopoda HOM05D001104 ORTHO05D006624 1.7e-94 350.1 421 44.9
AL5G17430 Arabidopsis lyrata HOM05D001104 ORTHO05D006624 1.7e-94 350.1 419 47.0
Glyma.19G007900 Glycine max HOM05D001104 ORTHO05D006624 1.7e-94 350.1 422 46.9
Phvul.004G013700 Phaseolus vulgaris HOM05D001104 ORTHO05D006624 2.9e-94 349.4 417 46.5
VMungo0464G0407 Vigna mungo HOM05D001104 ORTHO05D006624 1.1e-93 347.4 417 45.3
DCAR_011201 Daucus carota HOM05D001104 ORTHO05D006624 1.6e-92 343.6 395 47.3
arahy.Tifrunner.gnm1.ann1.S5BZSG Arachis hypogaea HOM05D001104 ORTHO05D006624 4.6e-92 342.0 441 44.0
CARHR149500 Cardamine hirsuta HOM05D001104 ORTHO05D006624 4.6e-92 342.0 430 46.7
Lalb_Chr06g0176011 Lupinus albus HOM05D001104 ORTHO05D006624 8.7e-91 337.8 413 46.2
DCAR_015045 Daucus carota HOM05D001104 ORTHO05D006624 1.5e-90 337.0 473 41.6
MBI16_g05636_MAGBIO Magnolia biondii HOM05D001104 ORTHO05D006624 1.5e-90 337.0 394 45.7
Sc03g0007930 Simmondsia chinensis HOM05D001104 ORTHO05D006624 1.4e-88 330.5 347 53.0
Gohir.D07G227400 Gossypium hirsutum HOM05D001104 ORTHO05D006624 2.4e-88 329.7 394 44.9
C02p54570 Brassica napus HOM05D001104 ORTHO05D006624 1.3e-86 323.9 373 48.8
FAN02G3192 Fragaria x ananassa HOM05D001104 ORTHO05D006624 4.9e-86 322.0 495 38.8
SGA_v2.0_scaffold135G34875 Striga asiatica HOM05D001104 ORTHO05D006624 4.6e-84 315.5 366 48.6
Os05g0577800 Oryza sativa ssp. japonica HOM05D001104 ORTHO05D006624 6.0e-84 315.1 425 41.6
Lj2g0012499 Lotus japonicus HOM05D001104 ORTHO05D006624 1.6e-81 307.0 428 42.8
CDE06G1183 Ceratophyllum demersum HOM05D001104 ORTHO05D006624 1.2e-79 300.8 423 41.1
Manes.17G117000 Manihot esculenta HOM05D001104 ORTHO05D006624 7.7e-79 298.1 393 44.5
Aa31LG2G4840 Aethionema arabicum HOM05D001104 ORTHO05D006285 2.9e-78 296.2 365 45.2
Oeu043054.1 Olea europaea HOM05D001104 ORTHO05D006285 1.8e-75 287.0 374 43.9
C02p54520 Brassica napus HOM05D001104 ORTHO05D006624 4.8e-73 278.9 370 44.9
BcaC03g17495 Brassica carinata HOM05D001104 ORTHO05D006624 2.4e-72 276.6 376 43.9
HPP92_024321 Vanilla planifolia HOM05D001104 ORTHO05D006285 1.2e-71 274.2 356 44.4
unitig_899.g15491 Utricularia gibba HOM05D000928 ORTHO05D001186 3.4e-71 272.7 339 45.1
A06p40770 Brassica napus HOM05D001104 ORTHO05D006624 1.8e-64 250.4 249 54.2
BolC7t44224H Brassica oleracea HOM05D001104 ORTHO05D006624 2.4e-64 250.0 248 54.0
BraA06t26998Z Brassica rapa HOM05D001104 ORTHO05D006624 7.0e-64 248.4 248 54.0
Psat1g057160 Pisum sativum HOM05D001104 ORTHO05D006624 1.4e-59 234.2 279 45.2
Os05g0577900 Oryza sativa ssp. japonica HOM05D001104 ORTHO05D006624 4.4e-58 229.2 420 35.0
AagrBONN_evm.TU.Sc2ySwM_340.221 Anthoceros agrestis HOM05D001104 ORTHO05D006624 3.7e-57 226.1 427 34.2
Pp3c25_9610 Physcomitrium patens HOM05D001104 ORTHO05D006624 6.5e-54 215.3 431 32.7
Hund10304 Selenicereus undatus HOM05D001104 ORTHO05D006624 2.1e-52 210.3 265 46.8
Zm00001eb344500 Zea mays HOM05D001104 ORTHO05D006624 1.2e-50 204.5 267 41.2
TPR.G2265 Trifolium pratense HOM05D001104 ORTHO05D006624 2.6e-50 203.4 197 53.3
BolC2t11515H Brassica oleracea HOM05D001104 ORTHO05D006624 1.8e-48 197.2 588 28.2
A02p35680 Brassica napus HOM05D001104 ORTHO05D006624 7.7e-47 191.8 641 26.4
Cfa008567 Carpinus fangiana HOM05D001104 ORTHO05D006624 2.8e-36 156.8 143 58.7
A06p40780 Brassica napus HOM05D001104 ORTHO05D006624 6.3e-33 145.6 109 59.6
BraA02t08570Z Brassica rapa HOM05D001104 ORTHO05D006624 1.2e-28 131.3 107 55.1
BraA02t08571Z Brassica rapa HOM05D001104 ORTHO05D006624 1.8e-27 127.5 94 67.0
BolC2t11520H Brassica oleracea HOM05D001104 ORTHO05D006624 5.2e-27 125.9 242 38.4
SEGI_13753 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 1.1e-24 118.2 128 46.9
Psat0s3401g0080 Pisum sativum HOM05D001104 ORTHO05D006624 1.2e-23 114.8 91 57.1
HanXRQChr06g0175561 Helianthus annuus HOM05D001104 ORTHO05D006624 3.6e-20 103.2 184 34.8
Thecc.04G111800 Theobroma cacao HOM05D001104 ORTHO05D006624 3.6e-20 103.2 82 57.3
Actinidia36089 Actinidia chinensis HOM05D001104 ORTHO05D006624 8.9e-19 98.6 242 33.5
BcaB07g30139 Brassica carinata HOM05D001104 ORTHO05D006624 1.9e-16 90.9 58 74.1
Cfa008566 Carpinus fangiana HOM05D001104 ORTHO05D006624 6.6e-14 82.4 57 70.2
Oeu043225.1 Olea europaea HOM05D003428 ORTHO05D006624 1.5e-13 81.3 51 68.6
Oeu051906.1 Olea europaea HOM05D003428 ORTHO05D006624 4.3e-13 79.7 51 68.6
SEGI_37884 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 4.4e-10 69.7 56 51.8
Ah.07g199000 Amaranthus hybridus HOM05D001104 ORTHO05D006624 1.7e-06 57.8 36 75.0


User provided reference genes

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