Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62041874 Chenopodium quinoa HOM05D001477 ORTHO05D001182 1.1e-184 649.8 315 100.0
AUR62023317 Chenopodium quinoa HOM05D001477 ORTHO05D001182 8.9e-99 364.4 286 67.1
AUR62023315 Chenopodium quinoa HOM05D001477 ORTHO05D001182 6.2e-92 341.7 288 63.5
AUR62023316 Chenopodium quinoa HOM05D001477 ORTHO05D001182 3.9e-86 322.4 276 62.3
AUR62008987 Chenopodium quinoa HOM05D000145 ORTHO05D001182 4.4e-82 308.9 254 64.2
EL10Ac2g04568 Beta vulgaris HOM05D001477 ORTHO05D001182 6.2e-68 261.9 276 52.5
Ah.16g101830 Amaranthus hybridus HOM05D000001 ORTHO05D001705 6.7e-38 162.2 245 41.6
QL05p032382 Quercus lobata HOM05D001477 ORTHO05D001182 3.2e-24 116.7 258 32.6
QL05p033764 Quercus lobata HOM05D001477 ORTHO05D001182 3.2e-24 116.7 258 32.6
CSS0008515 Camellia sinensis var. sinensis HOM05D001477 ORTHO05D001182 4.2e-24 116.3 238 34.0
CSS0038081 Camellia sinensis var. sinensis HOM05D001477 ORTHO05D001182 2.7e-23 113.6 238 33.6
arahy.Tifrunner.gnm1.ann1.06TEM4 Arachis hypogaea HOM05D001477 ORTHO05D001182 9.1e-19 98.6 249 30.9
Hma1.2p1_0978F.1_g243340 Hydrangea macrophylla HOM05D001477 ORTHO05D001182 1.2e-18 98.2 242 31.4
Potri.001G395000 Populus trichocarpa HOM05D001477 ORTHO05D001182 1.6e-18 97.8 260 28.8
arahy.Tifrunner.gnm1.ann1.S0UFBH Arachis hypogaea HOM05D001477 ORTHO05D001182 4.5e-18 96.3 251 27.5
arahy.Tifrunner.gnm1.ann1.THM2IN Arachis hypogaea HOM05D001477 ORTHO05D001182 5.9e-18 95.9 250 29.6
Rhsim08G0241400 Rhododendron simsii HOM05D001477 ORTHO05D001182 5.9e-18 95.9 239 32.6
QL05p016571 Quercus lobata HOM05D001477 ORTHO05D001182 2.9e-17 93.6 270 27.0
arahy.Tifrunner.gnm1.ann1.ZKXL37 Arachis hypogaea HOM05D001477 ORTHO05D001182 1.1e-16 91.7 248 29.4
arahy.Tifrunner.gnm1.ann1.CVQ7TS Arachis hypogaea HOM05D001477 ORTHO05D001182 1.5e-16 91.3 287 28.6
arahy.Tifrunner.gnm1.ann1.I5UGXE Arachis hypogaea HOM05D001477 ORTHO05D001182 5.5e-16 89.4 252 30.2
Ciclev10025322m.g Citrus clementina HOM05D001477 ORTHO05D001182 9.4e-16 88.6 271 28.0
QL03p072973 Quercus lobata HOM05D001477 ORTHO05D001182 2.1e-15 87.4 255 27.5
Ciclev10033697m.g Citrus clementina HOM05D001477 ORTHO05D001182 2.7e-15 87.0 235 29.8
PGR083G1630 Punica granatum HOM05D001477 ORTHO05D001182 2.7e-15 87.0 249 28.1
Ciclev10025305m.g Citrus clementina HOM05D001477 ORTHO05D001182 8.0e-15 85.5 245 26.9
Ciclev10027565m.g Citrus clementina HOM05D001477 ORTHO05D001182 2.3e-14 84.0 154 33.1
Haze_15913 Corylus avellana HOM05D001477 ORTHO05D001182 5.2e-14 82.8 247 30.8
MD17G1178500 Malus domestica HOM05D001477 ORTHO05D001182 5.2e-14 82.8 257 28.4
QL05p016344 Quercus lobata HOM05D001477 ORTHO05D001182 2.6e-13 80.5 244 30.3
QL93p1866_0198 Quercus lobata HOM05D001477 ORTHO05D001182 3.3e-13 80.1 287 27.2
CiPaw.15G162600 Carya illinoinensis HOM05D001477 ORTHO05D001182 4.4e-13 79.7 249 27.3
EL10Ac3g05729 Beta vulgaris HOM05D001477 ORTHO05D001182 5.7e-13 79.3 234 26.1
Ciclev10025241m.g Citrus clementina HOM05D001477 ORTHO05D001182 7.5e-13 79.0 238 30.7
AUR62017679 Chenopodium quinoa HOM05D001477 ORTHO05D001182 9.7e-13 78.6 277 28.2
Rhsim06G0151700 Rhododendron simsii HOM05D001477 ORTHO05D001182 9.7e-13 78.6 250 28.8
Haze_18899 Corylus avellana HOM05D001477 ORTHO05D001182 2.2e-12 77.4 249 26.1
Cc00_g15990 Coffea canephora HOM05D001477 ORTHO05D003423 2.8e-12 77.0 194 33.0
Prupe.3G053600 Prunus persica HOM05D001477 ORTHO05D001182 2.8e-12 77.0 245 29.0
Haze_00867 Corylus avellana HOM05D001477 ORTHO05D001182 3.7e-12 76.6 248 28.2
FAN02G0832 Fragaria x ananassa HOM05D000862 ORTHO05D001182 4.8e-12 76.3 315 26.0
FAN02G0884 Fragaria x ananassa HOM05D001477 ORTHO05D001182 4.8e-12 76.3 315 26.0
PGR083G2834 Punica granatum HOM05D001477 ORTHO05D001182 4.8e-12 76.3 252 29.8
arahy.Tifrunner.gnm1.ann1.SBEJ10 Arachis hypogaea HOM05D004014 ORTHO05D005890 8.2e-12 75.5 207 28.0
CsaV3_3G044110 Cucumis sativus L. HOM05D001477 ORTHO05D001182 1.1e-11 75.1 261 26.8
Peaxi162Scf00202g02030 Petunia axillaris HOM05D001477 ORTHO05D001182 1.1e-11 75.1 246 25.2
RcHm_v2.0_Chr2g0142131 Rosa chinensis HOM05D001477 ORTHO05D001182 1.4e-11 74.7 257 28.0
vmacro19298 Vaccinium macrocarpon HOM05D001477 ORTHO05D001182 1.8e-11 74.3 245 26.9
Manes.04G135400 Manihot esculenta HOM05D001477 ORTHO05D001182 2.4e-11 73.9 249 28.1
PGSC0003DMG400028156 Solanum tuberosum HOM05D001477 ORTHO05D001182 2.4e-11 73.9 249 26.5
Cfa003613 Carpinus fangiana HOM05D001477 ORTHO05D001182 5.3e-11 72.8 254 28.7
FAN05G3307 Fragaria x ananassa HOM05D000862 ORTHO05D000943 5.3e-11 72.8 269 27.5
QL05p016491 Quercus lobata HOM05D001477 ORTHO05D001182 9.1e-11 72.0 172 33.7
Hma1.2p1_2617F.1_g325500 Hydrangea macrophylla HOM05D001477 ORTHO05D001182 1.2e-10 71.6 255 28.2
Hma1.2p1_0388F.1_g142450 Hydrangea macrophylla HOM05D001477 ORTHO05D001182 1.6e-10 71.2 254 27.6
FvH4_6g32840 Fragaria vesca HOM05D001477 ORTHO05D001182 2.0e-10 70.9 258 26.7
Sed0010878 Sechium edule HOM05D001477 ORTHO05D001182 2.0e-10 70.9 291 27.1
ECA232G5008 Erigeron canadensis HOM05D000862 ORTHO05D000943 2.7e-10 70.5 241 24.9
ECA232G1631 Erigeron canadensis HOM05D001477 ORTHO05D001182 4.5e-10 69.7 250 29.2
arahy.Tifrunner.gnm1.ann1.WE7T8M Arachis hypogaea HOM05D000862 ORTHO05D000943 7.7e-10 68.9 247 29.1
HanXRQChr09g0276031 Helianthus annuus HOM05D001477 ORTHO05D001182 7.7e-10 68.9 240 25.4
FAN14G2250 Fragaria x ananassa HOM05D000862 ORTHO05D000943 1.0e-09 68.6 263 27.0
arahy.Tifrunner.gnm1.ann1.5Y9MTZ Arachis hypogaea HOM05D001477 ORTHO05D001182 1.3e-09 68.2 264 26.9
MSTRG.10040 Avicennia marina HOM05D007834 ORTHO05D003423 1.3e-09 68.2 234 28.2
Haze_04928 Corylus avellana HOM05D001477 ORTHO05D001182 1.7e-09 67.8 263 28.9
PGR083G1680 Punica granatum HOM05D001477 ORTHO05D001182 1.7e-09 67.8 240 29.6
QL04p060686 Quercus lobata HOM05D001477 ORTHO05D001182 1.7e-09 67.8 244 27.9
arahy.Tifrunner.gnm1.ann1.Q9TM1C Arachis hypogaea HOM05D000862 ORTHO05D000943 2.2e-09 67.4 245 28.6
CSS0009889 Camellia sinensis var. sinensis HOM05D001477 ORTHO05D001182 2.2e-09 67.4 237 28.7
Haze_03787 Corylus avellana HOM05D001477 ORTHO05D001182 2.2e-09 67.4 259 28.6
Peaxi162Scf00840g00015 Petunia axillaris HOM05D001477 ORTHO05D001182 2.2e-09 67.4 240 25.4
TWI39G0090 Tripterygium wilfordii HOM05D001477 ORTHO05D001182 2.2e-09 67.4 249 24.9
PGR083G2101 Punica granatum HOM05D001477 ORTHO05D001182 2.9e-09 67.0 247 26.3
QL01p017794 Quercus lobata HOM05D001477 ORTHO05D001182 2.9e-09 67.0 239 25.9
COL.COLO4_30418 Corchorus olitorius HOM05D001477 ORTHO05D001182 3.8e-09 66.6 220 27.7
MD09G1197600 Malus domestica HOM05D001477 ORTHO05D001182 3.8e-09 66.6 143 30.8
Medtr6g006730 Medicago truncatula HOM05D001477 ORTHO05D001182 3.8e-09 66.6 257 24.5
CAN.G1349.10 Capsicum annuum HOM05D001477 ORTHO05D001182 5.0e-09 66.2 265 26.0
Dinv15487 Davidia involucrata HOM05D001477 ORTHO05D001182 8.5e-09 65.5 249 24.9
QL05p018582 Quercus lobata HOM05D001477 ORTHO05D001182 8.5e-09 65.5 243 27.6
Atru.chr6.1369 Acer truncatum HOM05D001477 ORTHO05D001182 1.1e-08 65.1 237 26.6
Lj3g0011959 Lotus japonicus HOM05D001477 ORTHO05D001182 1.9e-08 64.3 243 26.3
Atru.chr1.2844 Acer truncatum HOM05D001477 ORTHO05D001182 2.5e-08 63.9 260 25.0
Haze_18985 Corylus avellana HOM05D001477 ORTHO05D001182 2.5e-08 63.9 91 34.1
Cfa020769 Carpinus fangiana HOM05D001477 ORTHO05D001182 3.2e-08 63.5 233 26.6
Nitab4.5_0006071g0070 Nicotiana tabacum HOM05D001477 ORTHO05D001182 3.2e-08 63.5 246 24.0
arahy.Tifrunner.gnm1.ann1.KH6B5H Arachis hypogaea HOM05D001477 ORTHO05D001182 4.2e-08 63.2 91 36.3
MELO3C013024.2 Cucumis melo HOM05D001477 ORTHO05D001182 4.2e-08 63.2 166 28.9
Manes.07G068500 Manihot esculenta HOM05D001477 ORTHO05D001182 7.2e-08 62.4 251 25.1
arahy.Tifrunner.gnm1.ann1.RP4NXG Arachis hypogaea HOM05D001477 ORTHO05D001182 9.4e-08 62.0 264 25.4
Cpa.g.sc17.157 Carica papaya HOM05D001477 ORTHO05D001182 9.4e-08 62.0 214 29.0
Haze_19062 Corylus avellana HOM05D001477 ORTHO05D001182 9.4e-08 62.0 245 23.7
Gohir.D05G135100 Gossypium hirsutum HOM05D001477 ORTHO05D001182 1.6e-07 61.2 250 26.8
CAN.G635.4 Capsicum annuum HOM05D001477 ORTHO05D001182 2.1e-07 60.8 95 32.6
Cc05_g11410 Coffea canephora HOM05D001477 ORTHO05D001182 2.1e-07 60.8 239 23.8
Gorai.009G138900 Gossypium raimondii HOM05D001477 ORTHO05D001182 2.1e-07 60.8 246 27.6
Haze_22438 Corylus avellana HOM05D026606 ORTHO05D001182 2.7e-07 60.5 239 26.4
Atru.chr6.1364 Acer truncatum HOM05D001477 ORTHO05D001182 3.6e-07 60.1 225 25.3
QL02p094064 Quercus lobata HOM05D001477 ORTHO05D001182 3.6e-07 60.1 185 31.4
COL.COLO4_12879 Corchorus olitorius HOM05D001477 ORTHO05D001182 4.7e-07 59.7 248 25.0
Solyc03g121290.4 Solanum lycopersicum HOM05D001477 ORTHO05D001182 4.7e-07 59.7 96 37.5
Sopen03g040100 Solanum pennellii HOM05D001477 ORTHO05D001182 4.7e-07 59.7 96 37.5
CAN.G1124.4 Capsicum annuum HOM05D001477 ORTHO05D001182 6.1e-07 59.3 239 24.7
COL.COLO4_30594 Corchorus olitorius HOM05D000862 ORTHO05D000943 6.1e-07 59.3 132 31.1
PGSC0003DMG400002600 Solanum tuberosum HOM05D001477 ORTHO05D001182 6.1e-07 59.3 96 36.5
arahy.Tifrunner.gnm1.ann1.IC7WFX Arachis hypogaea HOM05D001477 ORTHO05D001182 8.0e-07 58.9 141 30.5
Cfa015667 Carpinus fangiana HOM05D001477 ORTHO05D001182 8.0e-07 58.9 76 39.5
Manes.11G029400 Manihot esculenta HOM05D001477 ORTHO05D001182 8.0e-07 58.9 243 28.4
Ciclev10031194m.g Citrus clementina HOM05D001477 ORTHO05D001182 1.0e-06 58.5 252 24.2
Hma1.2p1_0388F.1_g142070 Hydrangea macrophylla HOM05D001477 ORTHO05D001182 1.0e-06 58.5 278 24.1
arahy.Tifrunner.gnm1.ann1.L6A5G2 Arachis hypogaea HOM05D001477 ORTHO05D001182 1.4e-06 58.2 260 26.2
QL05p015815 Quercus lobata HOM05D001477 ORTHO05D001182 1.4e-06 58.2 78 41.0
Cfa020687 Carpinus fangiana HOM05D001477 ORTHO05D001182 1.8e-06 57.8 83 33.7
Potri.012G099400 Populus trichocarpa HOM05D001477 ORTHO05D001182 1.8e-06 57.8 250 27.6
Rhsim04G0225400 Rhododendron simsii HOM05D001477 ORTHO05D001182 1.8e-06 57.8 134 31.3
Sabra12G0072600 Salix brachista HOM05D001477 ORTHO05D001182 3.0e-06 57.0 253 27.3
Actinidia26014 Actinidia chinensis HOM05D001477 ORTHO05D001182 4.0e-06 56.6 84 36.9
AUR62015215 Chenopodium quinoa HOM05D001477 ORTHO05D001182 6.8e-06 55.8 87 37.9
Ciclev10027014m.g Citrus clementina HOM05D001477 ORTHO05D001182 6.8e-06 55.8 92 34.8
HanXRQChr09g0238591 Helianthus annuus HOM05D001477 ORTHO05D001182 8.8e-06 55.5 192 28.1
PGSC0003DMG400018858 Solanum tuberosum HOM05D006683 ORTHO05D008629 8.8e-06 55.5 274 22.6


User provided reference genes

Program Settings