Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62041210 Chenopodium quinoa HOM05D004913 ORTHO05D006150 4.0e-149 531.6 301 100.0
AUR62040390 Chenopodium quinoa HOM05D004913 ORTHO05D006150 4.8e-110 401.7 288 83.7
EL10Ac4g07493 Beta vulgaris HOM05D004913 ORTHO05D006150 6.3e-102 374.8 307 73.9
GSVIVG01018096001 Vitis vinifera HOM05D004913 ORTHO05D006150 7.2e-98 361.3 340 69.4
Thecc.04G244000 Theobroma cacao HOM05D004913 ORTHO05D006150 1.5e-95 353.6 341 67.7
Duzib052G0554 Durio zibethinus HOM05D004913 ORTHO05D006150 4.4e-95 352.1 341 67.7
vmacro15402 Vaccinium macrocarpon HOM05D004913 ORTHO05D006150 1.6e-92 343.6 348 64.9
Cpa.g.sc58.23 Carica papaya HOM05D004913 ORTHO05D006150 1.5e-90 337.0 339 65.8
Rhsim02G0032600 Rhododendron simsii HOM05D004913 ORTHO05D006150 3.2e-90 335.9 336 65.2
PGR004G2231 Punica granatum HOM05D004913 ORTHO05D006150 1.6e-89 333.6 342 64.3
CiPaw.02G117800 Carya illinoinensis HOM05D004913 ORTHO05D006150 4.7e-89 332.0 340 64.7
RcHm_v2.0_Chr5g0043971 Rosa chinensis HOM05D004913 ORTHO05D006150 5.2e-88 328.6 339 61.9
Duzib151G0562 Durio zibethinus HOM05D004913 ORTHO05D006150 8.8e-88 327.8 341 62.8
CSS0025455 Camellia sinensis var. sinensis HOM05D004913 ORTHO05D006150 9.7e-87 324.3 349 62.2
Manes.15G035800 Manihot esculenta HOM05D004913 ORTHO05D006150 2.2e-86 323.2 300 66.3
QL06p015098 Quercus lobata HOM05D004913 ORTHO05D006150 1.1e-85 320.9 347 62.2
Nn1g02556 Nelumbo nucifera HOM05D004913 ORTHO05D006150 7.0e-85 318.2 339 61.9
CSS0009777 Camellia sinensis var. sinensis HOM05D004913 ORTHO05D003182 1.6e-84 317.0 336 62.8
MD13G1204100 Malus domestica HOM05D004913 ORTHO05D006150 2.0e-84 316.6 356 59.8
FAN11G1852 Fragaria x ananassa HOM05D004913 ORTHO05D006150 3.5e-84 315.8 327 63.6
MBI11_g38514_MAGBIO Magnolia biondii HOM05D004913 ORTHO05D006150 3.5e-84 315.8 343 61.8
TAR636G2191 Trochodendron aralioides HOM05D004913 ORTHO05D006150 3.5e-84 315.8 332 64.8
Gohir.D10G152000 Gossypium hirsutum HOM05D004913 ORTHO05D006150 2.9e-83 312.8 341 62.8
THA.LOC104815979 Tarenaya hassleriana HOM05D004913 ORTHO05D006150 2.9e-83 312.8 287 67.2
Potri.008G160800 Populus trichocarpa HOM05D004913 ORTHO05D006150 5.0e-83 312.0 344 59.6
Gorai.011G170500 Gossypium raimondii HOM05D004913 ORTHO05D006150 2.5e-82 309.7 350 61.7
Sed0027984 Sechium edule HOM05D004913 ORTHO05D006150 4.2e-82 308.9 339 62.2
MD16G1206200 Malus domestica HOM05D004913 ORTHO05D006150 5.5e-82 308.5 356 57.3
Sed0018032 Sechium edule HOM05D004913 ORTHO05D003182 7.2e-82 308.1 335 61.5
Gohir.A10G114500 Gossypium hirsutum HOM05D004913 ORTHO05D006150 9.4e-82 307.8 350 61.4
Prupe.1G027200 Prunus persica HOM05D004913 ORTHO05D006150 1.6e-81 307.0 352 59.4
CsaV3_3G012680 Cucumis sativus L. HOM05D004913 ORTHO05D006150 2.7e-81 306.2 340 60.3
Oeu032612.1 Olea europaea HOM05D004913 ORTHO05D006150 4.7e-81 305.4 343 59.2
TWI09G0491 Tripterygium wilfordii HOM05D004913 ORTHO05D006150 6.8e-80 301.6 337 59.1
Gorai.006G070100 Gossypium raimondii HOM05D004913 ORTHO05D006150 2.0e-79 300.1 295 65.4
Ciclev10005381m.g Citrus clementina HOM05D004913 ORTHO05D006150 4.4e-79 298.9 343 58.6
CANSAT78G1520 Cannabis sativa HOM05D004913 ORTHO05D006150 9.8e-79 297.7 362 55.5
Gohir.A09G057300 Gossypium hirsutum HOM05D004913 ORTHO05D006150 9.8e-79 297.7 297 65.0
Eucgr.H03172 Eucalyptus grandis HOM05D004913 ORTHO05D006150 1.7e-78 297.0 339 61.1
Potri.010G078500 Populus trichocarpa HOM05D004913 ORTHO05D006150 1.7e-78 297.0 273 66.3
Lj5g0012164 Lotus japonicus HOM05D004913 ORTHO05D006150 3.7e-78 295.8 335 58.8
SGA_v2.0_scaffold101G29779 Striga asiatica HOM05D004913 ORTHO05D006150 8.3e-78 294.7 317 62.5
FvH4_3g24470 Fragaria vesca HOM05D004913 ORTHO05D006150 1.8e-77 293.5 340 59.7
Sabra08G0122700 Salix brachista HOM05D004913 ORTHO05D006150 1.8e-77 293.5 304 61.2
Manes.03G170000 Manihot esculenta HOM05D004913 ORTHO05D006150 9.1e-77 291.2 342 58.2
MSTRG.21888 Avicennia marina HOM05D004913 ORTHO05D006150 1.2e-76 290.8 335 60.3
Dinv44614 Davidia involucrata HOM05D004913 ORTHO05D006150 1.2e-76 290.8 343 59.8
THA.LOC104826068 Tarenaya hassleriana HOM05D004913 ORTHO05D006150 1.2e-76 290.8 267 66.3
Haze_11271 Corylus avellana HOM05D004913 ORTHO05D006150 1.6e-76 290.4 263 69.2
BolC7t43157H Brassica oleracea HOM05D004913 ORTHO05D006150 2.0e-76 290.0 362 56.1
Sp2g08510 Schrenkiella parvula HOM05D004913 ORTHO05D006150 3.5e-76 289.3 296 62.8
C07p26280 Brassica napus HOM05D004913 ORTHO05D006150 5.9e-76 288.5 362 56.1
MELO3C006479.2 Cucumis melo HOM05D004913 ORTHO05D006150 1.0e-75 287.7 376 54.3
Phvul.003G138434 Phaseolus vulgaris HOM05D004913 ORTHO05D006150 2.3e-75 286.6 324 59.6
VMungo0720G1087 Vigna mungo HOM05D004913 ORTHO05D006150 4.2e-74 282.3 323 59.1
ATR0665G449 Amborella trichopoda HOM05D004913 ORTHO05D006150 3.6e-73 279.3 348 54.6
FAN25G2316 Fragaria x ananassa HOM05D004913 ORTHO05D006150 1.8e-72 276.9 250 66.8
FAN25G1200 Fragaria x ananassa HOM05D004913 ORTHO05D006150 2.3e-72 276.6 250 66.4
DCAR_030710 Daucus carota HOM05D004913 ORTHO05D006150 2.0e-71 273.5 323 57.6
AL37U10050 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 5.7e-71 271.9 291 59.8
AL1G13830 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 9.8e-71 271.2 294 61.2
arahy.Tifrunner.gnm1.ann1.8JLR9N Arachis hypogaea HOM05D004913 ORTHO05D006150 1.3e-70 270.8 327 56.3
FAN21G0973 Fragaria x ananassa HOM05D004913 ORTHO05D006150 1.3e-70 270.8 249 65.5
AT1G04230 Arabidopsis thaliana HOM05D004913 ORTHO05D006150 3.7e-70 269.2 294 60.9
BolC2t10451H Brassica oleracea HOM05D004913 ORTHO05D006150 4.9e-70 268.9 338 54.7
Lsat_1_v5_gn_5_67500 Lactuca sativa HOM05D004913 ORTHO05D006150 6.3e-70 268.5 348 57.2
Psat6g114920 Pisum sativum HOM05D004913 ORTHO05D006150 6.3e-70 268.5 368 52.4
Carub.0001s0342 Capsella rubella HOM05D004913 ORTHO05D006150 8.3e-70 268.1 328 55.8
HanXRQChr12g0381181 Helianthus annuus HOM05D004913 ORTHO05D006150 8.3e-70 268.1 337 56.1
AT5G43720 Arabidopsis thaliana HOM05D004913 ORTHO05D006150 1.1e-69 267.7 332 56.3
Glyma.10G179800 Glycine max HOM05D004913 ORTHO05D006150 1.8e-69 266.9 281 59.8
Carub.0008s0491 Capsella rubella HOM05D004913 ORTHO05D006150 4.1e-69 265.8 296 58.8
CDE07G0872 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 2.0e-68 263.5 335 56.4
arahy.Tifrunner.gnm1.ann1.9S1KBE Arachis hypogaea HOM05D004913 ORTHO05D006150 2.7e-68 263.1 325 56.0
Glyma.20G210600 Glycine max HOM05D004913 ORTHO05D006150 2.7e-68 263.1 266 62.8
ECA233G3913 Erigeron canadensis HOM05D004913 ORTHO05D006150 4.5e-68 262.3 362 53.9
Migut.N00232 Erythranthe guttata HOM05D004913 ORTHO05D006150 7.8e-68 261.5 351 54.1
FAN16G1149 Fragaria x ananassa HOM05D004913 ORTHO05D006150 1.3e-67 260.8 221 69.2
PSO210G5612 Papaver somniferum HOM05D004913 ORTHO05D006150 6.6e-67 258.5 261 63.2
Medtr1g076290 Medicago truncatula HOM05D004913 ORTHO05D006150 1.1e-66 257.7 299 57.2
Gohir.D09G056500 Gossypium hirsutum HOM05D004913 ORTHO05D006150 3.3e-66 256.1 248 64.9
Lalb_Chr06g0168981 Lupinus albus HOM05D004913 ORTHO05D006150 5.6e-66 255.4 291 58.8
Lalb_Chr21g0311951 Lupinus albus HOM05D004913 ORTHO05D006150 2.8e-65 253.1 273 60.8
PSO832G0934 Papaver somniferum HOM05D004913 ORTHO05D006150 1.4e-64 250.8 358 52.0
Lj3A719T118 Lonicera japonica HOM05D004913 ORTHO05D006150 4.0e-64 249.2 309 57.6
CARHR003560 Cardamine hirsuta HOM05D004913 ORTHO05D006150 7.5e-63 245.0 328 54.3
Ca_09877_v3 Cicer arietinum L. HOM05D004913 ORTHO05D006150 3.7e-62 242.7 265 59.6
Hund17874 Selenicereus undatus HOM05D004913 ORTHO05D006150 6.4e-62 241.9 462 42.4
A06p47740 Brassica napus HOM05D004913 ORTHO05D006150 4.1e-61 239.2 352 50.9
COL.COLO4_15768 Corchorus olitorius HOM05D000979 ORTHO05D003182 1.6e-60 237.3 324 54.9
BraA06t27642Z Brassica rapa HOM05D004913 ORTHO05D006150 3.5e-60 236.1 352 50.6
TWI73G0814 Tripterygium wilfordii HOM05D004913 ORTHO05D006150 1.0e-59 234.6 337 51.9
Ah.13g071540 Amaranthus hybridus HOM05D004913 ORTHO05D006150 3.9e-59 232.6 191 75.9
BcaC06g31682 Brassica carinata HOM05D004913 ORTHO05D006150 3.9e-59 232.6 362 49.7
Solyc09g083270.4 Solanum lycopersicum HOM05D004913 ORTHO05D006150 1.9e-58 230.3 339 51.0
Sopen09g032190 Solanum pennellii HOM05D004913 ORTHO05D006150 2.5e-58 229.9 339 51.0
Thhalv10003245m.g Eutrema salsugineum HOM05D004913 ORTHO05D006150 5.6e-58 228.8 214 65.0
A02p27910 Brassica napus HOM05D004913 ORTHO05D006150 6.2e-57 225.3 320 51.2
BraA02t07829Z Brassica rapa HOM05D004913 ORTHO05D006150 6.2e-57 225.3 320 51.2
CAN.G626.13 Capsicum annuum HOM05D004913 ORTHO05D006150 1.4e-56 224.2 341 50.1
CDE04G3353 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 1.4e-56 224.2 335 49.9
CARHR179900 Cardamine hirsuta HOM05D004913 ORTHO05D006150 2.6e-55 219.9 213 63.4
AagrBONN_evm.TU.Sc2ySwM_362.2200 Anthoceros agrestis HOM05D004913 ORTHO05D006150 1.9e-53 213.8 231 59.7
PGSC0003DMG400006092 Solanum tuberosum HOM05D004913 ORTHO05D006150 3.2e-53 213.0 329 49.2
Aa31LG5G3520 Aethionema arabicum HOM05D004913 ORTHO05D006150 2.7e-52 209.9 198 63.1
Aqoxy2G03527 Aquilegia oxysepala HOM05D004913 ORTHO05D006150 2.7e-52 209.9 326 50.3
Peaxi162Scf01416g00120 Petunia axillaris HOM05D004913 ORTHO05D006150 2.7e-52 209.9 346 46.5
Actinidia05471 Actinidia chinensis HOM05D004913 ORTHO05D006150 1.7e-51 207.2 325 49.8
BcaC03g16589 Brassica carinata HOM05D004913 ORTHO05D006150 1.1e-50 204.5 203 61.1
C02p44080 Brassica napus HOM05D004913 ORTHO05D006150 1.1e-50 204.5 203 61.1
Cc03_g04640 Coffea canephora HOM05D004913 ORTHO05D006150 1.1e-50 204.5 189 65.6
SEGI_31281 Sequoiadendron giganteum HOM05D004913 ORTHO05D006150 5.6e-50 202.2 217 58.1
unitig_0.g131 Utricularia gibba HOM05D004913 ORTHO05D006150 1.6e-49 200.7 200 61.5
Nitab4.5_0000525g0090 Nicotiana tabacum HOM05D004913 ORTHO05D006150 3.1e-48 196.4 350 45.7
Migut.G00417 Erythranthe guttata HOM05D004913 ORTHO05D006150 1.2e-47 194.5 311 47.6
SalBow3G1711 Salvia bowleyana HOM05D004913 ORTHO05D006150 9.9e-47 191.4 321 46.7
Nitab4.5_0004203g0050 Nicotiana tabacum HOM05D004913 ORTHO05D006150 8.3e-46 188.3 341 44.0
Zm00001eb212900 Zea mays HOM05D004913 ORTHO05D006150 1.2e-44 184.5 324 44.8
HPP92_014140 Vanilla planifolia HOM05D004913 ORTHO05D006150 1.0e-43 181.4 260 51.2
CDE06G2453 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 2.3e-43 180.3 252 51.6
Pp3c2_37690 Physcomitrium patens HOM05D004913 ORTHO05D006150 1.5e-42 177.6 341 42.8
Mapoly0010s0154 Marchantia polymorpha HOM05D004913 ORTHO05D006150 1.9e-42 177.2 319 45.1
SMO358G0388 Selaginella moellendorffii HOM05D004913 ORTHO05D006150 4.3e-42 176.0 310 41.9
CDE07G2030 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 1.2e-41 174.5 340 44.4
Sc13g0004930 Simmondsia chinensis HOM05D004913 ORTHO05D006150 3.1e-40 169.9 262 48.5
PSO210G2862 Papaver somniferum HOM05D004913 ORTHO05D006150 9.9e-39 164.9 234 48.7
Os03g0797700 Oryza sativa ssp. japonica HOM05D004913 ORTHO05D006150 2.4e-37 160.2 278 43.9
TAR365G1176 Trochodendron aralioides HOM05D004913 ORTHO05D006150 1.6e-36 157.5 190 60.0
AL8G16560 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 8.7e-35 151.8 162 57.4
PSO238G0009 Papaver somniferum HOM05D004913 ORTHO05D006150 1.1e-34 151.4 433 34.9
BcaC06g34635 Brassica carinata HOM05D004913 ORTHO05D006150 5.3e-32 142.5 197 54.3
SHI00581 Sapria himalayana HOM05D004913 ORTHO05D006150 1.5e-31 141.0 324 40.4
BcaC06g34634 Brassica carinata HOM05D004913 ORTHO05D006150 5.1e-27 125.9 146 58.2
ClCG05G004680 Citrullus lanatus HOM05D000979 ORTHO05D003182 1.8e-24 117.5 282 38.3
Ah.13g071550 Amaranthus hybridus HOM05D004913 ORTHO05D006150 1.1e-21 108.2 95 70.5
CBR_g525 Chara braunii HOM05D004913 ORTHO05D006150 1.9e-18 97.4 136 46.3
SMO347G0406 Selaginella moellendorffii HOM05D004913 ORTHO05D006150 1.2e-15 88.2 145 40.7
GSVIVG01034858001 Vitis vinifera HOM05D004913 ORTHO05D006150 2.4e-08 63.9 57 64.9
Zm00001eb034960 Zea mays HOM05D004913 ORTHO05D006150 5.8e-07 59.3 83 48.2


User provided reference genes

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