Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62040914 Chenopodium quinoa HOM05D004899 ORTHO05D006580 4.3e-206 721.1 365 100.0
EL10Ac4g08990 Beta vulgaris HOM05D004899 ORTHO05D006580 2.0e-182 642.5 394 83.5
AUR62004828 Chenopodium quinoa HOM05D004899 ORTHO05D006580 4.7e-176 621.3 358 89.4
Hund22166 Selenicereus undatus HOM05D004899 ORTHO05D006580 1.2e-171 606.7 394 77.9
Sc20g0000690 Simmondsia chinensis HOM05D004899 ORTHO05D006580 3.0e-167 592.0 394 75.6
Dinv06242 Davidia involucrata HOM05D004899 ORTHO05D006580 7.8e-155 550.8 394 70.8
CSS0003371 Camellia sinensis var. sinensis HOM05D004899 ORTHO05D006580 5.0e-154 548.1 394 70.8
Thecc.05G269900 Theobroma cacao HOM05D004899 ORTHO05D006580 1.1e-153 547.0 394 69.5
Duzib106G1539 Durio zibethinus HOM05D004899 ORTHO05D006580 2.5e-153 545.8 394 69.3
Actinidia34758 Actinidia chinensis HOM05D004899 ORTHO05D006580 1.0e-151 540.4 394 70.1
Manes.08G140200 Manihot esculenta HOM05D004899 ORTHO05D006580 4.0e-151 538.5 394 68.8
TAR362G0172 Trochodendron aralioides HOM05D004899 ORTHO05D006580 4.0e-151 538.5 394 69.3
Potri.013G047800 Populus trichocarpa HOM05D004899 ORTHO05D006580 5.2e-151 538.1 394 68.5
Gohir.A11G246300 Gossypium hirsutum HOM05D004899 ORTHO05D006580 1.5e-150 536.6 394 68.3
Potri.019G020000 Populus trichocarpa HOM05D004899 ORTHO05D006580 1.5e-150 536.6 394 68.5
Rhsim09G0133700 Rhododendron simsii HOM05D004899 ORTHO05D006580 2.0e-150 536.2 394 69.3
CiPaw.08G118600 Carya illinoinensis HOM05D004899 ORTHO05D006580 4.4e-150 535.0 395 69.6
PGR142G4366 Punica granatum HOM05D004899 ORTHO05D006580 1.7e-149 533.1 394 69.0
Gohir.D11G256500 Gossypium hirsutum HOM05D004899 ORTHO05D006580 2.9e-149 532.3 394 68.0
GSVIVG01023441001 Vitis vinifera HOM05D004899 ORTHO05D006580 2.9e-149 532.3 394 68.5
Gorai.007G274800 Gossypium raimondii HOM05D004899 ORTHO05D006580 4.9e-149 531.6 394 68.0
Nn1g02931 Nelumbo nucifera HOM05D004899 ORTHO05D006580 2.4e-148 529.3 394 68.5
TWI36G0265 Tripterygium wilfordii HOM05D004899 ORTHO05D006580 4.1e-148 528.5 394 68.0
ClCG11G010490 Citrullus lanatus HOM05D004899 ORTHO05D006580 5.4e-148 528.1 394 67.3
MELO3C008694.2 Cucumis melo HOM05D004899 ORTHO05D006580 1.2e-147 526.9 394 67.0
CsaV3_2G009880 Cucumis sativus L. HOM05D004899 ORTHO05D006580 1.2e-147 526.9 394 67.0
Eucgr.B02154 Eucalyptus grandis HOM05D004899 ORTHO05D006580 1.2e-147 526.9 394 68.0
CAN.G1465.15 Capsicum annuum HOM05D004899 ORTHO05D006580 1.6e-147 526.6 394 67.8
Prupe.6G350900 Prunus persica HOM05D004899 ORTHO05D006580 2.7e-147 525.8 394 69.5
Sabra19G0032200 Salix brachista HOM05D004899 ORTHO05D006580 2.7e-147 525.8 394 67.3
HanXRQChr08g0216941 Helianthus annuus HOM05D004899 ORTHO05D006580 6.0e-147 524.6 394 68.3
PGSC0003DMG400023503 Solanum tuberosum HOM05D004899 ORTHO05D006580 7.8e-147 524.2 394 67.0
RcHm_v2.0_Chr3g0449481 Rosa chinensis HOM05D004899 ORTHO05D006580 1.0e-146 523.9 394 67.8
THA.LOC104820770 Tarenaya hassleriana HOM05D004899 ORTHO05D006580 3.0e-146 522.3 392 66.3
FAN14G2287 Fragaria x ananassa HOM05D004899 ORTHO05D006580 3.9e-146 521.9 394 67.3
FAN14G4075 Fragaria x ananassa HOM05D004899 ORTHO05D006580 3.9e-146 521.9 394 67.3
Sed0011238 Sechium edule HOM05D004899 ORTHO05D006580 5.0e-146 521.5 397 67.0
Sp3g03310 Schrenkiella parvula HOM05D004899 ORTHO05D006580 8.6e-146 520.8 392 66.8
CANSAT54G0581 Cannabis sativa HOM05D004899 ORTHO05D006580 1.1e-145 520.4 394 67.3
FvH4_6g01740 Fragaria vesca HOM05D004899 ORTHO05D006580 1.9e-145 519.6 394 67.0
Solyc05g054950.2 Solanum lycopersicum HOM05D004899 ORTHO05D006580 1.9e-145 519.6 394 66.5
QL03p029772 Quercus lobata HOM05D004899 ORTHO05D006580 2.5e-145 519.2 410 65.4
Cc02_g08720 Coffea canephora HOM05D004899 ORTHO05D006580 4.3e-145 518.5 404 66.8
AL3G14410 Arabidopsis lyrata HOM05D004899 ORTHO05D006580 5.6e-145 518.1 392 66.1
ECA233G1223 Erigeron canadensis HOM05D004899 ORTHO05D006580 7.3e-145 517.7 394 67.3
Carub.0003s0362 Capsella rubella HOM05D004899 ORTHO05D006580 1.2e-144 516.9 392 65.8
Peaxi162Scf00015g02911 Petunia axillaris HOM05D004899 ORTHO05D006580 1.6e-144 516.5 394 66.2
Sopen05g033410 Solanum pennellii HOM05D004899 ORTHO05D006580 1.6e-144 516.5 394 66.2
MD04G1231200 Malus domestica HOM05D004899 ORTHO05D006580 2.1e-144 516.2 395 68.4
COL.COLO4_15501 Corchorus olitorius HOM05D004899 ORTHO05D006580 3.6e-144 515.4 378 68.3
FAN05G0331 Fragaria x ananassa HOM05D004899 ORTHO05D006580 4.7e-144 515.0 394 66.2
FAN05G3121 Fragaria x ananassa HOM05D004899 ORTHO05D006580 4.7e-144 515.0 394 66.2
AT3G04460 Arabidopsis thaliana HOM05D004899 ORTHO05D006580 8.0e-144 514.2 392 65.6
Thhalv10020878m.g Eutrema salsugineum HOM05D004899 ORTHO05D006580 1.4e-143 513.5 394 66.5
FAN09G4068 Fragaria x ananassa HOM05D004899 ORTHO05D006580 1.4e-143 513.5 394 66.8
Aa31LG5G14890 Aethionema arabicum HOM05D004899 ORTHO05D006580 1.8e-143 513.1 392 65.3
MBI07_g12932_MAGBIO Magnolia biondii HOM05D004899 ORTHO05D006580 5.2e-143 511.5 395 67.3
MSTRG.8229 Avicennia marina HOM05D004899 ORTHO05D006580 8.9e-143 510.8 392 65.8
PSO674G0057 Papaver somniferum HOM05D004899 ORTHO05D006580 1.2e-142 510.4 394 65.5
Lj2A44T81 Lonicera japonica HOM05D004899 ORTHO05D006580 5.8e-142 508.1 438 61.9
Atru.chr2.1001 Acer truncatum HOM05D004899 ORTHO05D006580 1.7e-141 506.5 370 68.6
Lsat_1_v5_gn_8_25181 Lactuca sativa HOM05D004899 ORTHO05D006580 2.2e-141 506.1 394 65.5
SalBow6G5574 Salvia bowleyana HOM05D004899 ORTHO05D006580 1.1e-140 503.8 417 63.3
Aqoxy5G00161 Aquilegia oxysepala HOM05D004899 ORTHO05D006580 3.2e-140 502.3 394 66.5
A03p33610 Brassica napus HOM05D004899 ORTHO05D006580 5.4e-140 501.5 392 64.8
A05p43040 Brassica napus HOM05D004899 ORTHO05D006580 5.4e-140 501.5 392 64.3
BraA03t12536Z Brassica rapa HOM05D004899 ORTHO05D006580 7.1e-140 501.1 397 64.2
Migut.F01538 Erythranthe guttata HOM05D004899 ORTHO05D006580 1.6e-139 500.0 394 64.7
BolC3t16350H Brassica oleracea HOM05D004899 ORTHO05D006580 2.7e-139 499.2 392 64.5
BcaC01g04376 Brassica carinata HOM05D004899 ORTHO05D006580 1.0e-138 497.3 392 64.3
C03p40810 Brassica napus HOM05D004899 ORTHO05D006580 1.0e-138 497.3 392 64.3
Ah.06g191810 Amaranthus hybridus HOM05D004899 ORTHO05D006580 1.3e-138 496.9 365 71.8
arahy.Tifrunner.gnm1.ann1.VXFY9N Arachis hypogaea HOM05D004899 ORTHO05D006580 3.9e-138 495.4 396 65.7
arahy.Tifrunner.gnm1.ann1.A8VMLZ Arachis hypogaea HOM05D004899 ORTHO05D006580 6.6e-138 494.6 396 65.7
Ciclev10024089m.g Citrus clementina HOM05D004899 ORTHO05D006580 6.6e-138 494.6 370 68.1
SGA_v2.0_scaffold426G51496 Striga asiatica HOM05D004899 ORTHO05D006580 1.5e-137 493.4 394 64.0
VMungo0540G0495 Vigna mungo HOM05D004899 ORTHO05D006580 4.4e-134 481.9 396 63.9
Glyma.03G250100 Glycine max HOM05D004899 ORTHO05D006580 2.2e-133 479.6 396 64.4
Glyma.19G247700 Glycine max HOM05D004899 ORTHO05D006580 3.7e-133 478.8 394 64.5
Os10g0467200 Oryza sativa ssp. japonica HOM05D004899 ORTHO05D006580 1.1e-132 477.2 395 61.8
BcaB04g19333 Brassica carinata HOM05D004899 ORTHO05D006580 1.4e-132 476.9 376 64.1
Zm00001eb046420 Zea mays HOM05D004899 ORTHO05D006580 3.2e-132 475.7 395 62.0
Ca_11390_v3 Cicer arietinum L. HOM05D004899 ORTHO05D006580 1.6e-131 473.4 394 63.5
DCAR_023087 Daucus carota HOM05D004899 ORTHO05D006580 2.1e-131 473.0 393 62.6
Phvul.006G104800 Phaseolus vulgaris HOM05D004899 ORTHO05D006580 1.0e-130 470.7 396 63.6
ATR0736G049 Amborella trichopoda HOM05D004899 ORTHO05D006580 6.6e-130 468.0 395 61.0
Nitab4.5_0003965g0030 Nicotiana tabacum HOM05D004899 ORTHO05D006580 7.3e-129 464.5 394 61.7
Lj1g0026343 Lotus japonicus HOM05D004899 ORTHO05D006580 1.9e-124 449.9 409 58.2
TPR.G10414 Trifolium pratense HOM05D004899 ORTHO05D006580 2.4e-124 449.5 394 60.2
BcaC05g30197 Brassica carinata HOM05D004899 ORTHO05D006580 4.2e-124 448.7 401 60.3
CDE05G2618 Ceratophyllum demersum HOM05D004899 ORTHO05D006580 9.3e-124 447.6 398 59.8
unitig_899.g15065 Utricularia gibba HOM05D004899 ORTHO05D006580 1.0e-122 444.1 387 60.7
vmacro10377 Vaccinium macrocarpon HOM05D004899 ORTHO05D006580 2.3e-122 443.0 426 56.6
Lalb_Chr04g0253351 Lupinus albus HOM05D004899 ORTHO05D006580 6.6e-122 441.4 398 58.8
BcaC05g29943 Brassica carinata HOM05D004899 ORTHO05D006580 2.8e-120 436.0 392 59.2
Nitab4.5_0000914g0090 Nicotiana tabacum HOM05D004899 ORTHO05D006580 6.6e-114 414.8 394 57.9
Medtr1g116380 Medicago truncatula HOM05D004899 ORTHO05D006580 1.8e-111 406.8 373 58.2
C05p62800 Brassica napus HOM05D004899 ORTHO05D006580 1.3e-104 384.0 379 55.1
Cpa.g.sc306.4 Carica papaya HOM05D004899 ORTHO05D006580 4.6e-99 365.5 365 55.1
Psat0s1997g0040 Pisum sativum HOM05D004899 ORTHO05D006580 8.7e-98 361.3 292 65.8
SMO367G0182 Selaginella moellendorffii HOM05D004899 ORTHO05D006580 2.4e-95 353.2 396 48.2
Pp3c17_6400 Physcomitrium patens HOM05D004899 ORTHO05D006580 4.2e-92 342.4 397 48.1
AagrBONN_evm.TU.Sc2ySwM_228.2413 Anthoceros agrestis HOM05D004899 ORTHO05D006580 3.5e-91 339.3 396 47.2
HPP92_008536 Vanilla planifolia HOM05D004899 ORTHO05D006580 3.1e-87 326.2 285 59.3
CARHR078590 Cardamine hirsuta HOM05D004899 ORTHO05D006580 1.1e-84 317.8 246 65.4
Mapoly0097s0077 Marchantia polymorpha HOM05D004899 ORTHO05D006580 2.2e-80 303.5 297 54.5
Haze_04413 Corylus avellana HOM05D004899 ORTHO05D006580 3.8e-77 292.7 328 50.3
RhsimUnG0045000 Rhododendron simsii HOM05D004899 ORTHO05D006580 6.3e-72 275.4 349 47.9
MD12G1249500 Malus domestica HOM05D004899 ORTHO05D006580 6.1e-67 258.8 303 52.1
SHI31416 Sapria himalayana HOM05D004899 ORTHO05D006580 4.1e-63 246.1 392 42.9
CANSAT80G2333 Cannabis sativa HOM05D004899 ORTHO05D006580 6.3e-56 222.2 182 60.4
Oeu050631.1 Olea europaea HOM05D004899 ORTHO05D006580 8.3e-56 221.9 295 47.1
CANSAT80G2786 Cannabis sativa HOM05D004899 ORTHO05D006580 1.4e-55 221.1 182 60.4
CBR_g51833 Chara braunii HOM05D004899 ORTHO05D006580 1.7e-53 214.2 540 30.2
Hma1.2p1_1336F.1_g276500 Hydrangea macrophylla HOM05D004899 ORTHO05D006580 6.3e-48 195.7 122 81.1
CARHR078600 Cardamine hirsuta HOM05D004899 ORTHO05D006580 1.6e-46 191.0 151 62.3
Cre06.g263602 Chlamydomonas reinhardtii HOM05D004899 ORTHO05D006580 2.7e-46 190.3 416 31.0
MCO09G554 Micromonas commoda HOM05D004899 ORTHO05D006580 1.6e-43 181.0 407 33.2
TPR.G8890 Trifolium pratense HOM05D001167 ORTHO05D001054 4.7e-43 179.5 165 55.8
BolC5t34933H Brassica oleracea HOM05D004899 ORTHO05D006580 1.8e-42 177.6 125 73.6
C07p09790 Brassica napus HOM05D004899 ORTHO05D006580 3.5e-38 163.3 165 51.5
PRCOL_00005674 Prasinoderma coloniale HOM05D004899 ORTHO05D006580 1.7e-37 161.0 389 30.3
MD00G1148800 Malus domestica HOM05D004899 ORTHO05D006580 1.1e-36 158.3 205 48.3
BraA05t23048Z Brassica rapa HOM05D004899 ORTHO05D006580 2.3e-34 150.6 92 80.4
C01p22380 Brassica napus HOM05D004899 ORTHO05D006580 1.4e-31 141.4 135 56.3
Cc06_g01540 Coffea canephora HOM05D004899 ORTHO05D006580 5.6e-28 129.4 120 56.7
Oeu040904.1 Olea europaea HOM05D004899 ORTHO05D006580 1.2e-27 128.3 71 80.3
Cc05_g01300 Coffea canephora HOM05D004899 ORTHO05D006580 4.7e-27 126.3 109 63.3
SEGI_08581 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 1.8e-26 124.4 148 44.6
BcaC06g35909 Brassica carinata HOM05D004899 ORTHO05D006580 3.4e-25 120.2 150 44.0
MD08G1214200 Malus domestica HOM05D004899 ORTHO05D006580 4.4e-25 119.8 71 81.7
BolC6t38557H Brassica oleracea HOM05D004899 ORTHO05D006580 6.4e-24 115.9 144 46.5
BraA04t16133Z Brassica rapa HOM05D004899 ORTHO05D006580 8.3e-24 115.5 109 56.0
SEGI_05516 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 1.4e-23 114.8 91 64.8
Cc06_g14670 Coffea canephora HOM05D004899 ORTHO05D006580 2.7e-22 110.5 118 50.8
FAN18G0756 Fragaria x ananassa HOM05D004899 ORTHO05D019122 6.4e-16 89.4 81 61.7
Psat3g057720 Pisum sativum HOM05D004899 ORTHO05D006580 3.2e-15 87.0 50 70.0
BcaC09g50711 Brassica carinata HOM05D004899 ORTHO05D006580 4.6e-14 83.2 120 41.7
FvH4_3g30700 Fragaria vesca HOM05D004899 ORTHO05D019122 6.0e-14 82.8 58 69.0
SEGI_06182 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 7.8e-14 82.4 48 70.8
SalBow6G6423 Salvia bowleyana HOM05D031023 ORTHO05D019122 2.3e-13 80.9 49 79.6
FvH4_4g13630 Fragaria vesca HOM05D004899 ORTHO05D019122 1.5e-09 68.2 44 75.0
Haze_02280 Corylus avellana HOM05D000013 ORTHO05D000689 3.8e-08 63.5 35 85.7
Psat3g113200 Pisum sativum HOM05D004899 ORTHO05D034818 1.4e-07 61.6 47 63.8
Cc04_g06470 Coffea canephora HOM05D004899 ORTHO05D034818 7.1e-07 59.3 38 78.9


User provided reference genes

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